0.022386 0.000000 0.000000 0.000000 0.022386 0.000000 0.000000 0.000000 0.011902 0.00000 0.00000 0.00000 Lewis, H.A. Chen, H. Edo, C. Buckanovich, R.J. Yang, Y.Y.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 44.670 44.670 84.020 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 S C N 142 N C N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N S N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N O N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 R C N 285 N O N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C N 308 N O N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N sing Y 231 N doub N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub N 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing UK Structure Fold.Des. FODEFH 1263 0969-2126 7 191 203 10.1016/S0969-2126(99)80025-2 10368286 Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. 1999 0000-0002-2487-9713 10.2210/pdb1dt4/pdb pdb_00001dt4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.0 1 IMAGE PLATE 1998-03-01 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 7895.203 NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1 THIRD K-HOMOLOGY DOMAIN A37C 1 man polymer no no MKDVVEIAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRNRKVTITGTPAATQAAQYLITQRI MKDVVEIAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRNRKVTITGTPAATQAAQYLITQRI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample NEURON 9606 BRAIN Homo sapiens 562 Escherichia coli BL21(DE3)PLYSS 1 2.65 53.64 VAPOR DIFFUSION 4.0 Li2SO4, sodium acetate, sodium cloride, pH 4.0, VAPOR DIFFUSION, temperature 293.0K 293.0 citation_author struct_ref_seq_dif database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Database references Data collection 1 0 2000-02-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-02-03 1 4 2021-11-03 1 5 2024-02-07 _citation_author.identifier_ORCID _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details NOVA-2 KH3 NOVA-2 KH3/RNA RCSB Y RCSB 2000-01-11 REL REL MET 4 n 1 MET 4 A ALA 5 n 2 LYS 5 A ASP 6 n 3 ASP 6 A VAL 7 n 4 VAL 7 A VAL 8 n 5 VAL 8 A GLU 9 n 6 GLU 9 A ILE 10 n 7 ILE 10 A ALA 11 n 8 ALA 11 A VAL 12 n 9 VAL 12 A PRO 13 n 10 PRO 13 A GLU 14 n 11 GLU 14 A ASN 15 n 12 ASN 15 A LEU 16 n 13 LEU 16 A VAL 17 n 14 VAL 17 A GLY 18 n 15 GLY 18 A ALA 19 n 16 ALA 19 A ILE 20 n 17 ILE 20 A LEU 21 n 18 LEU 21 A GLY 22 n 19 GLY 22 A ALA 23 n 20 LYS 23 A GLY 24 n 21 GLY 24 A GLY 25 n 22 GLY 25 A ALA 26 n 23 LYS 26 A THR 27 n 24 THR 27 A LEU 28 n 25 LEU 28 A VAL 29 n 26 VAL 29 A GLU 30 n 27 GLU 30 A TYR 31 n 28 TYR 31 A GLN 32 n 29 GLN 32 A GLU 33 n 30 GLU 33 A LEU 34 n 31 LEU 34 A THR 35 n 32 THR 35 A GLY 36 n 33 GLY 36 A CYS 37 n 34 CYS 37 A ALA 38 n 35 ARG 38 A ILE 39 n 36 ILE 39 A GLN 40 n 37 GLN 40 A ILE 41 n 38 ILE 41 A SER 42 n 39 SER 42 A ALA 43 n 40 LYS 43 A LYS 44 n 41 LYS 44 A GLY 45 n 42 GLY 45 A GLU 46 n 43 GLU 46 A PHE 47 n 44 PHE 47 A LEU 48 n 45 LEU 48 A PRO 49 n 46 PRO 49 A GLY 50 n 47 GLY 50 A THR 51 n 48 THR 51 A ALA 52 n 49 ARG 52 A ASN 53 n 50 ASN 53 A ARG 54 n 51 ARG 54 A ALA 55 n 52 LYS 55 A VAL 56 n 53 VAL 56 A THR 57 n 54 THR 57 A ILE 58 n 55 ILE 58 A THR 59 n 56 THR 59 A GLY 60 n 57 GLY 60 A THR 61 n 58 THR 61 A PRO 62 n 59 PRO 62 A ALA 63 n 60 ALA 63 A ALA 64 n 61 ALA 64 A THR 65 n 62 THR 65 A GLN 66 n 63 GLN 66 A ALA 67 n 64 ALA 67 A ALA 68 n 65 ALA 68 A GLN 69 n 66 GLN 69 A TYR 70 n 67 TYR 70 A LEU 71 n 68 LEU 71 A ILE 72 n 69 ILE 72 A THR 73 n 70 THR 73 A GLN 74 n 71 GLN 74 A ALA 75 n 72 ARG 75 A ILE 76 n 73 ILE 76 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 12 A O VAL 9 A N ARG 54 A N ARG 51 A O THR 59 A O THR 56 A N ARG 38 A N ARG 35 1 A CG LYS 5 A CG LYS 2 1 Y 1 A CD LYS 5 A CD LYS 2 1 Y 1 A CE LYS 5 A CE LYS 2 1 Y 1 A NZ LYS 5 A NZ LYS 2 1 Y 1 A CG LYS 23 A CG LYS 20 1 Y 1 A CD LYS 23 A CD LYS 20 1 Y 1 A CE LYS 23 A CE LYS 20 1 Y 1 A NZ LYS 23 A NZ LYS 20 1 Y 1 A CG LYS 26 A CG LYS 23 1 Y 1 A CD LYS 26 A CD LYS 23 1 Y 1 A CE LYS 26 A CE LYS 23 1 Y 1 A NZ LYS 26 A NZ LYS 23 1 Y 1 A CG ARG 38 A CG ARG 35 1 Y 1 A CD ARG 38 A CD ARG 35 1 Y 1 A NE ARG 38 A NE ARG 35 1 Y 1 A CZ ARG 38 A CZ ARG 35 1 Y 1 A NH1 ARG 38 A NH1 ARG 35 1 Y 1 A NH2 ARG 38 A NH2 ARG 35 1 Y 1 A CG LYS 43 A CG LYS 40 1 Y 1 A CD LYS 43 A CD LYS 40 1 Y 1 A CE LYS 43 A CE LYS 40 1 Y 1 A NZ LYS 43 A NZ LYS 40 1 Y 1 A CG ARG 52 A CG ARG 49 1 Y 1 A CD ARG 52 A CD ARG 49 1 Y 1 A NE ARG 52 A NE ARG 49 1 Y 1 A CZ ARG 52 A CZ ARG 49 1 Y 1 A NH1 ARG 52 A NH1 ARG 49 1 Y 1 A NH2 ARG 52 A NH2 ARG 49 1 Y 1 A CG LYS 55 A CG LYS 52 1 Y 1 A CD LYS 55 A CD LYS 52 1 Y 1 A CE LYS 55 A CE LYS 52 1 Y 1 A NZ LYS 55 A NZ LYS 52 1 Y 1 A CG ARG 75 A CG ARG 72 1 Y 1 A CD ARG 75 A CD ARG 72 1 Y 1 A NE ARG 75 A NE ARG 72 1 Y 1 A CZ ARG 75 A CZ ARG 72 1 Y 1 A NH1 ARG 75 A NH1 ARG 72 1 Y 1 A NH2 ARG 75 A NH2 ARG 72 1 Y 1 A VAL 17 -38.61 -36.58 1 A LYS 23 -54.64 80.95 1 A LYS 44 -28.68 -47.41 1 A PRO 49 -20.77 -85.34 0.2820000 0.2220000 0.2420000 0.2280000 2.6 20.0 228 2916 2660 random 1 3.0 3.0 Engh & Huber 2.6 20.0 0 514 0 0 514 1.4 0.0077 56.6 2.6 20.0 1DT4 2659 2473 3.0 3.0 0.0410000 1 24.3 4.3 91.2 0.1900000 2.60 2.69 250 3.1 90.3 refinement CNS data reduction DENZO data scaling CCP4 (TRUNCATE) phasing CNS CRYSTAL STRUCTURE OF NOVA-1 KH3 K-HOMOLOGY RNA-BINDING DOMAIN 1 N N A VAL 17 A VAL 14 HELX_P A GLY 22 A GLY 19 1 1 6 A GLY 25 A GLY 22 HELX_P A GLY 36 A GLY 33 1 2 12 A THR 61 A THR 58 HELX_P A ILE 76 A ILE 73 1 3 16 IMMUNE SYSTEM KH DOMAIN, ALPHA-BETA FOLD, RNA-BINDING MOTIF, IMMUNE SYSTEM NOVA1_HUMAN UNP 1 P51513 423 495 1DT4 4 76 P51513 A 1 1 73 1 ALA engineered mutation CYS 37 1DT4 A P51513 UNP 457 34 1 VAL conflict LEU 48 1DT4 A P51513 UNP 468 45 1 expression tag MET 4 1DT4 A P51513 UNP 1 3 anti-parallel anti-parallel A ASP 6 A ASP 3 A PRO 13 A PRO 10 A ASN 53 A ASN 50 A GLY 60 A GLY 57 A ARG 38 A ARG 35 A ILE 41 A ILE 38 94 P 42 21 2