0.017953
0.000000
0.003653
0.000000
0.022779
0.000000
0.000000
0.000000
0.013809
0.00000
0.00000
0.00000
Weiss, M.S.
Eisenberg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
101.50
90.00
55.700
43.900
73.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C19 H25 N7 O15 P2
653.387
ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
R
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
C
N
19
R
C
N
20
N
O
N
21
S
C
N
22
N
O
N
23
R
C
N
24
N
O
N
25
R
C
Y
26
N
N
Y
27
N
C
Y
28
N
N
Y
29
N
C
Y
30
N
C
N
31
N
N
Y
32
N
N
Y
33
N
C
Y
34
N
N
Y
35
N
C
N
36
N
N
N
37
N
C
N
38
N
O
N
39
N
N
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
C
N
44
R
C
N
45
R
C
N
46
N
O
N
47
S
C
N
48
N
O
N
49
R
C
N
50
N
O
N
51
N
O
N
52
N
C
N
53
N
P
N
54
N
O
N
55
N
O
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
N
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
R
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
S
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
Y
210
N
C
Y
211
N
N
Y
212
N
C
Y
213
N
C
Y
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
S
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
N
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
S
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
R
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
N
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
sing
Y
38
N
doub
N
39
N
sing
Y
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
doub
N
45
N
sing
N
46
N
sing
Y
47
N
sing
Y
48
N
doub
N
49
N
sing
Y
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
Y
212
N
sing
Y
213
N
doub
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
sing
Y
322
N
sing
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
773
781
10.1021/bi00003a010
7827036
Structure of the isolated catalytic domain of diphtheria toxin.
1995
To be Published
0353
The Refined Structure of Dimeric Diphtheria Toxin at 2.0 Angstroms Resolution
To be Published
0353
The Refined Structure of Monomeric Diphtheria Toxin
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
3127
Domain Swapping: Entangling Alliances between Proteins
1994
UK
Nature
NATUAS
0006
0028-0836
357
216
Three Domains for Three Functions: The Crystal Structure of Diphtheria Toxin
1992
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
264
10402
X-Ray Grade Crystals of the Enzymatic Fragment of Diphtheria Toxin
1989
10.2210/pdb1dtp/pdb
pdb_00001dtp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
20774.979
DIPHTHERIA TOXIN
1
man
polymer
653.387
ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
8
nat
water
no
no
GADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGV
VKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALS
VELEINFETRGKRGQDAMYEYMAQACAGNR
GADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGV
VKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALS
VELEINFETRGKRGQDAMYEYMAQACAGNR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lambda-like viruses
sample
10703
Corynephage beta
2.13
42.26
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1994-11-01
1
1
2008-03-03
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-09-08
REL
REL
APU
ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE
HOH
water
APU
200
2
APU
APU
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
GLY
1
n
1
GLY
1
A
ALA
2
n
2
ALA
2
A
ASP
3
n
3
ASP
3
A
ASP
4
n
4
ASP
4
A
VAL
5
n
5
VAL
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
SER
8
n
8
SER
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
VAL
13
n
13
VAL
13
A
MET
14
n
14
MET
14
A
GLU
15
n
15
GLU
15
A
ASN
16
n
16
ASN
16
A
PHE
17
n
17
PHE
17
A
SER
18
n
18
SER
18
A
SER
19
n
19
SER
19
A
TYR
20
n
20
TYR
20
A
HIS
21
n
21
HIS
21
A
GLY
22
n
22
GLY
22
A
THR
23
n
23
THR
23
A
LYS
24
n
24
LYS
24
A
PRO
25
n
25
PRO
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
SER
30
n
30
SER
30
A
ILE
31
n
31
ILE
31
A
GLN
32
n
32
GLN
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
ILE
35
n
35
ILE
35
A
GLN
36
n
36
GLN
36
A
LYS
37
n
37
LYS
37
A
PRO
38
n
38
PRO
38
A
LYS
39
n
39
LYS
39
A
SER
40
n
40
SER
40
A
GLY
41
n
41
GLY
41
A
THR
42
n
42
THR
42
A
GLN
43
n
43
GLN
43
A
GLY
44
n
44
GLY
44
A
ASN
45
n
45
ASN
45
A
TYR
46
n
46
TYR
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
ASP
49
n
49
ASP
49
A
TRP
50
n
50
TRP
50
A
LYS
51
n
51
LYS
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
TYR
54
n
54
TYR
54
A
SER
55
n
55
SER
55
A
THR
56
n
56
THR
56
A
ASP
57
n
57
ASP
57
A
ASN
58
n
58
ASN
58
A
LYS
59
n
59
LYS
59
A
TYR
60
n
60
TYR
60
A
ASP
61
n
61
ASP
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
GLY
64
n
64
GLY
64
A
TYR
65
n
65
TYR
65
A
SER
66
n
66
SER
66
A
VAL
67
n
67
VAL
67
A
ASP
68
n
68
ASP
68
A
ASN
69
n
69
ASN
69
A
GLU
70
n
70
GLU
70
A
ASN
71
n
71
ASN
71
A
PRO
72
n
72
PRO
72
A
LEU
73
n
73
LEU
73
A
SER
74
n
74
SER
74
A
GLY
75
n
75
GLY
75
A
LYS
76
n
76
LYS
76
A
ALA
77
n
77
ALA
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
VAL
80
n
80
VAL
80
A
VAL
81
n
81
VAL
81
A
LYS
82
n
82
LYS
82
A
VAL
83
n
83
VAL
83
A
THR
84
n
84
THR
84
A
TYR
85
n
85
TYR
85
A
PRO
86
n
86
PRO
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
THR
89
n
89
THR
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
VAL
96
n
96
VAL
96
A
ASP
97
n
97
ASP
97
A
ASN
98
n
98
ASN
98
A
ALA
99
n
99
ALA
99
A
GLU
100
n
100
GLU
100
A
THR
101
n
101
THR
101
A
ILE
102
n
102
ILE
102
A
LYS
103
n
103
LYS
103
A
LYS
104
n
104
LYS
104
A
GLU
105
n
105
GLU
105
A
LEU
106
n
106
LEU
106
A
GLY
107
n
107
GLY
107
A
LEU
108
n
108
LEU
108
A
SER
109
n
109
SER
109
A
LEU
110
n
110
LEU
110
A
THR
111
n
111
THR
111
A
GLU
112
n
112
GLU
112
A
PRO
113
n
113
PRO
113
A
LEU
114
n
114
LEU
114
A
MET
115
n
115
MET
115
A
GLU
116
n
116
GLU
116
A
GLN
117
n
117
GLN
117
A
VAL
118
n
118
VAL
118
A
GLY
119
n
119
GLY
119
A
THR
120
n
120
THR
120
A
GLU
121
n
121
GLU
121
A
GLU
122
n
122
GLU
122
A
PHE
123
n
123
PHE
123
A
ILE
124
n
124
ILE
124
A
LYS
125
n
125
LYS
125
A
ARG
126
n
126
ARG
126
A
PHE
127
n
127
PHE
127
A
GLY
128
n
128
GLY
128
A
ASP
129
n
129
ASP
129
A
GLY
130
n
130
GLY
130
A
ALA
131
n
131
ALA
131
A
SER
132
n
132
SER
132
A
ARG
133
n
133
ARG
133
A
VAL
134
n
134
VAL
134
A
VAL
135
n
135
VAL
135
A
LEU
136
n
136
LEU
136
A
SER
137
n
137
SER
137
A
LEU
138
n
138
LEU
138
A
PRO
139
n
139
PRO
139
A
PHE
140
n
140
PHE
140
A
ALA
141
n
141
ALA
141
A
GLU
142
n
142
GLU
142
A
GLY
143
n
143
GLY
143
A
SER
144
n
144
SER
144
A
SER
145
n
145
SER
145
A
SER
146
n
146
SER
146
A
VAL
147
n
147
VAL
147
A
GLU
148
n
148
GLU
148
A
TYR
149
n
149
TYR
149
A
ILE
150
n
150
ILE
150
A
ASN
151
n
151
ASN
151
A
ASN
152
n
152
ASN
152
A
TRP
153
n
153
TRP
153
A
GLU
154
n
154
GLU
154
A
GLN
155
n
155
GLN
155
A
ALA
156
n
156
ALA
156
A
LYS
157
n
157
LYS
157
A
ALA
158
n
158
ALA
158
A
LEU
159
n
159
LEU
159
A
SER
160
n
160
SER
160
A
VAL
161
n
161
VAL
161
A
GLU
162
n
162
GLU
162
A
LEU
163
n
163
LEU
163
A
GLU
164
n
164
GLU
164
A
ILE
165
n
165
ILE
165
A
ASN
166
n
166
ASN
166
A
PHE
167
n
167
PHE
167
A
GLU
168
n
168
GLU
168
A
THR
169
n
169
THR
169
A
ARG
170
n
170
ARG
170
A
GLY
171
n
171
GLY
171
A
LYS
172
n
172
LYS
172
A
ARG
173
n
173
ARG
173
A
GLY
174
n
174
GLY
174
A
GLN
175
n
175
GLN
175
A
ASP
176
n
176
ASP
176
A
ALA
177
n
177
ALA
177
A
MET
178
n
178
MET
178
A
TYR
179
n
179
TYR
179
A
GLU
180
n
180
GLU
180
A
TYR
181
n
181
TYR
181
A
MET
182
n
182
MET
182
A
ALA
183
n
183
ALA
183
A
GLN
184
n
184
GLN
184
A
ALA
185
n
185
ALA
185
A
CYS
186
n
186
CYS
186
A
ALA
187
n
187
ALA
187
A
GLY
188
n
188
GLY
188
A
ASN
189
n
189
ASN
189
A
ARG
190
n
190
ARG
190
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
LYS
172
A
CG
LYS
172
1
Y
1
A
CD
LYS
172
A
CD
LYS
172
1
Y
1
A
CE
LYS
172
A
CE
LYS
172
1
Y
1
A
NZ
LYS
172
A
NZ
LYS
172
1
Y
1
A
CG
ASN
189
A
CG
ASN
189
1
Y
1
A
OD1
ASN
189
A
OD1
ASN
189
1
Y
1
A
ND2
ASN
189
A
ND2
ASN
189
1
Y
1
A
TYR
27
0.067
SIDE CHAIN
1
13.55
2.20
113.40
126.95
A
A
A
CA
CB
CG
LYS
LYS
LYS
10
10
10
N
1
-18.18
1.60
110.90
92.72
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
13
13
13
N
1
11.40
1.50
110.90
122.30
A
A
A
CA
CB
CG1
VAL
VAL
VAL
13
13
13
N
1
-4.74
0.60
121.00
116.26
A
A
A
CB
CG
CD1
TYR
TYR
TYR
20
20
20
N
1
-8.93
1.40
112.40
103.47
A
A
A
CA
CB
CG2
THR
THR
THR
23
23
23
N
1
-19.08
2.20
117.20
98.12
A
A
A
CA
C
N
GLY
GLY
TYR
26
26
27
Y
1
-11.40
1.60
110.90
99.50
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
28
28
28
N
1
4.47
0.60
121.00
125.47
A
A
A
CB
CG
CD2
TYR
TYR
TYR
46
46
46
N
1
-4.57
0.60
121.00
116.43
A
A
A
CB
CG
CD1
TYR
TYR
TYR
46
46
46
N
1
5.77
0.80
106.30
112.07
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
50
50
50
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
50
50
50
N
1
19.39
2.20
113.40
132.79
A
A
A
CA
CB
CG
ASP
ASP
ASP
68
68
68
N
1
-3.63
0.60
121.00
117.37
A
A
A
CB
CG
CD2
TYR
TYR
TYR
85
85
85
N
1
-11.91
1.70
111.00
99.09
A
A
A
CB
CG
CD2
LEU
LEU
LEU
88
88
88
N
1
-16.72
2.70
111.00
94.28
A
A
A
N
CA
C
VAL
VAL
VAL
91
91
91
N
1
-17.20
2.70
111.00
93.80
A
A
A
N
CA
C
LEU
LEU
LEU
92
92
92
N
1
-14.31
2.20
117.20
102.89
A
A
A
CA
C
N
SER
SER
LEU
109
109
110
Y
1
-11.39
1.60
110.90
99.51
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
118
118
118
N
1
4.83
0.50
120.30
125.13
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
5.58
0.90
118.30
123.88
A
A
A
CB
CG
OD1
ASP
ASP
ASP
129
129
129
N
1
-3.21
0.50
120.30
117.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
133
133
133
N
1
-10.62
1.60
110.90
100.28
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
135
135
135
N
1
-10.42
1.70
111.00
100.58
A
A
A
CB
CG
CD2
LEU
LEU
LEU
136
136
136
N
1
5.33
0.80
106.30
111.63
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
153
153
153
N
1
-5.82
0.80
107.30
101.48
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
153
153
153
N
1
16.23
2.30
115.30
131.53
A
A
A
CA
CB
CG
LEU
LEU
LEU
159
159
159
N
1
-8.62
1.40
112.40
103.78
A
A
A
CA
CB
CG2
THR
THR
THR
169
169
169
N
1
5.00
0.50
120.30
125.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
170
170
170
N
1
3.25
0.50
120.30
123.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
173
173
173
N
1
-3.90
0.50
120.30
116.40
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
173
173
173
N
1
-9.70
1.60
100.20
90.50
A
A
A
CG
SD
CE
MET
MET
MET
178
178
178
N
1
-17.41
2.20
117.20
99.79
A
A
A
CA
C
N
GLY
GLY
ASN
188
188
189
Y
1
A
A
NE2
CD2
HIS
HIS
21
21
-0.075
0.011
1.373
1.298
N
1
A
TYR
27
-63.34
0.58
1
A
SER
40
-67.90
79.73
1
A
ASP
68
45.37
-139.52
1
A
ASN
69
85.73
88.11
1
A
GLU
70
56.28
89.32
1
A
ASN
71
94.39
87.30
1
A
ALA
77
177.74
148.72
1
A
ASP
97
-91.50
59.60
1
A
THR
111
-167.11
32.57
1
A
LYS
125
-65.19
-75.72
1
A
ALA
158
-71.48
42.95
1
A
ASP
176
-76.64
-74.11
0.1970000
0.1970000
2.5
10.0
5228
1
0.0
2.5
10.0
8
1505
43
0
1454
0.023
4.4
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
THE STRUCTURE OF THE ISOLATED CATALYTIC DOMAIN OF DIPHTHERIA TOXIN
1
N
N
2
N
N
3
N
N
A
TYR
27
A
TYR
27
HELX_P
A
LYS
33
A
LYS
33
1
H1
7
A
LYS
59
A
LYS
59
HELX_P
A
TYR
65
A
TYR
65
1
H2
7
A
ALA
99
A
ALA
99
HELX_P
A
LEU
106
A
LEU
106
1
H3
8
A
LEU
114
A
LEU
114
HELX_P
A
VAL
118
A
VAL
118
1
H4
5
A
GLU
121
A
GLU
121
HELX_P
A
GLY
128
A
GLY
128
1
H5
8
A
GLY
174
A
GLY
174
HELX_P
A
CYS
186
A
CYS
186
1
H6
13
TOXIN
TOXIN
DTX_CORBE
UNP
1
1
P00588
MLVRGYVVSRKLFASILIGALLGIGAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDD
DWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFG
DGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDV
IRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQV
IDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLF
QVVHNSYNRPAYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKT
HISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLS
LFFEIKS
33
222
1DTP
1
190
P00588
A
1
1
190
5
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
12
A
PHE
12
A
GLU
15
A
GLU
15
A
THR
89
A
THR
89
A
LYS
95
A
LYS
95
A
ARG
133
A
ARG
133
A
PRO
139
A
PRO
139
A
SER
146
A
SER
146
A
ASN
152
A
ASN
152
A
PHE
53
A
PHE
53
A
THR
56
A
THR
56
A
PHE
17
A
PHE
17
A
THR
23
A
THR
23
A
GLY
79
A
GLY
79
A
TYR
85
A
TYR
85
A
SER
160
A
SER
160
A
ASN
166
A
ASN
166
Unknown
11
BINDING SITE FOR RESIDUE APU A 200
A
APU
200
Software
16
A
HIS
21
A
HIS
21
11
1_555
A
GLY
22
A
GLY
22
11
1_555
A
LYS
24
A
LYS
24
11
1_555
A
ILE
31
A
ILE
31
11
1_555
A
GLY
34
A
GLY
34
11
1_555
A
THR
42
A
THR
42
11
1_555
A
GLY
44
A
GLY
44
11
1_555
A
ASN
45
A
ASN
45
11
1_555
A
TYR
54
A
TYR
54
11
1_555
A
TYR
65
A
TYR
65
11
1_555
A
ASN
69
A
ASN
69
11
1_555
A
HIS
21
A
HIS
21
16
1_555
A
GLY
22
A
GLY
22
16
1_555
A
LYS
24
A
LYS
24
16
1_555
A
TYR
27
A
TYR
27
16
1_555
A
ILE
31
A
ILE
31
16
1_555
A
GLY
34
A
GLY
34
16
1_555
A
ILE
35
A
ILE
35
16
1_555
A
GLN
36
A
GLN
36
16
1_555
A
PRO
38
A
PRO
38
16
1_555
A
THR
42
A
THR
42
16
1_555
A
GLY
44
A
GLY
44
16
1_555
A
ASN
45
A
ASN
45
16
1_555
A
PHE
53
A
PHE
53
16
1_555
A
TYR
54
A
TYR
54
16
1_555
A
TYR
65
A
TYR
65
16
1_555
A
ASN
69
A
ASN
69
16
1_555
5
C 1 2 1