0.013600
0.000000
0.000000
0.000000
0.025601
0.000000
0.000000
0.000000
0.043197
0.00000
0.00000
0.00000
Skarzynski, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
73.530
39.060
23.150
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
224
671
683
10.1016/0022-2836(92)90552-U
1373774
Crystal structure of alpha-dendrotoxin from the green mamba venom and its comparison with the structure of bovine pancreatic trypsin inhibitor.
1992
GW
Hoppe-Seyler's Z.Physiol.Chem.
HSZPAZ
0905
0018-4888
361
661
The Amino Acid Sequences of Two Proteinase Inhibitor Homologues from Dendroaspis Augusticeps Venom
1980
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
7069.176
ALPHA-DENDROTOXIN
1
man
polymer
96.063
SULFATE ION
5
syn
non-polymer
18.015
water
59
nat
water
no
yes
(PCA)PRRKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTCIG
QPRRKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTCIG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
eastern green mamba
Dendroaspis
sample
8618
Dendroaspis angusticeps
2.35
47.67
entity_poly
pdbx_database_status
pdbx_struct_mod_residue
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Polymer sequence
1
0
1992-01-15
1
1
2008-03-24
1
2
2011-07-13
2
0
2019-12-25
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_database_status.process_site
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
Y
BNL
1991-04-29
REL
REL
SO4
SULFATE ION
HOH
water
SO4
60
2
SO4
SO4
60
A
SO4
61
2
SO4
SO4
61
A
SO4
62
2
SO4
SO4
62
A
SO4
63
2
SO4
SO4
63
A
SO4
64
2
SO4
SO4
64
A
HOH
1
3
HOH
HOH
65
A
HOH
2
3
HOH
HOH
66
A
HOH
3
3
HOH
HOH
67
A
HOH
4
3
HOH
HOH
68
A
HOH
5
3
HOH
HOH
69
A
HOH
6
3
HOH
HOH
70
A
HOH
7
3
HOH
HOH
71
A
HOH
8
3
HOH
HOH
72
A
HOH
9
3
HOH
HOH
73
A
HOH
10
3
HOH
HOH
74
A
HOH
11
3
HOH
HOH
75
A
HOH
12
3
HOH
HOH
76
A
HOH
13
3
HOH
HOH
77
A
HOH
14
3
HOH
HOH
78
A
HOH
15
3
HOH
HOH
79
A
HOH
16
3
HOH
HOH
80
A
HOH
17
3
HOH
HOH
81
A
HOH
18
3
HOH
HOH
82
A
HOH
19
3
HOH
HOH
83
A
HOH
20
3
HOH
HOH
84
A
HOH
21
3
HOH
HOH
85
A
HOH
22
3
HOH
HOH
86
A
HOH
23
3
HOH
HOH
87
A
HOH
24
3
HOH
HOH
88
A
HOH
25
3
HOH
HOH
89
A
HOH
26
3
HOH
HOH
90
A
HOH
27
3
HOH
HOH
91
A
HOH
28
3
HOH
HOH
92
A
HOH
29
3
HOH
HOH
93
A
HOH
30
3
HOH
HOH
94
A
HOH
31
3
HOH
HOH
95
A
HOH
32
3
HOH
HOH
96
A
HOH
33
3
HOH
HOH
97
A
HOH
34
3
HOH
HOH
98
A
HOH
35
3
HOH
HOH
99
A
HOH
36
3
HOH
HOH
100
A
HOH
37
3
HOH
HOH
101
A
HOH
38
3
HOH
HOH
102
A
HOH
39
3
HOH
HOH
103
A
HOH
40
3
HOH
HOH
104
A
HOH
41
3
HOH
HOH
105
A
HOH
42
3
HOH
HOH
106
A
HOH
43
3
HOH
HOH
107
A
HOH
44
3
HOH
HOH
108
A
HOH
45
3
HOH
HOH
109
A
HOH
46
3
HOH
HOH
110
A
HOH
47
3
HOH
HOH
111
A
HOH
48
3
HOH
HOH
112
A
HOH
49
3
HOH
HOH
113
A
HOH
50
3
HOH
HOH
114
A
HOH
51
3
HOH
HOH
115
A
HOH
52
3
HOH
HOH
116
A
HOH
53
3
HOH
HOH
117
A
HOH
54
3
HOH
HOH
118
A
HOH
55
3
HOH
HOH
119
A
HOH
56
3
HOH
HOH
120
A
HOH
57
3
HOH
HOH
121
A
HOH
58
3
HOH
HOH
122
A
HOH
59
3
HOH
HOH
123
A
PCA
1
n
1
PCA
1
A
PRO
2
n
2
PRO
2
A
ARG
3
n
3
ARG
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
CYS
7
n
7
CYS
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
HIS
10
n
10
HIS
10
A
ARG
11
n
11
ARG
11
A
ASN
12
n
12
ASN
12
A
PRO
13
n
13
PRO
13
A
GLY
14
n
14
GLY
14
A
ARG
15
n
15
ARG
15
A
CYS
16
n
16
CYS
16
A
TYR
17
n
17
TYR
17
A
ASP
18
n
18
ASP
18
A
LYS
19
n
19
LYS
19
A
ILE
20
n
20
ILE
20
A
PRO
21
n
21
PRO
21
A
ALA
22
n
22
ALA
22
A
PHE
23
n
23
PHE
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
ASN
26
n
26
ASN
26
A
GLN
27
n
27
GLN
27
A
LYS
28
n
28
LYS
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
CYS
32
n
32
CYS
32
A
GLU
33
n
33
GLU
33
A
ARG
34
n
34
ARG
34
A
PHE
35
n
35
PHE
35
A
ASP
36
n
36
ASP
36
A
TRP
37
n
37
TRP
37
A
SER
38
n
38
SER
38
A
GLY
39
n
39
GLY
39
A
CYS
40
n
40
CYS
40
A
GLY
41
n
41
GLY
41
A
GLY
42
n
42
GLY
42
A
ASN
43
n
43
ASN
43
A
SER
44
n
44
SER
44
A
ASN
45
n
45
ASN
45
A
ARG
46
n
46
ARG
46
A
PHE
47
n
47
PHE
47
A
LYS
48
n
48
LYS
48
A
THR
49
n
49
THR
49
A
ILE
50
n
50
ILE
50
A
GLU
51
n
51
GLU
51
A
GLU
52
n
52
GLU
52
A
CYS
53
n
53
CYS
53
A
ARG
54
n
54
ARG
54
A
ARG
55
n
55
ARG
55
A
THR
56
n
56
THR
56
A
CYS
57
n
57
CYS
57
A
ILE
58
n
58
ILE
58
A
GLY
59
n
59
GLY
59
A
author_defined_assembly
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CB
PCA
1
A
CB
PCA
1
1
Y
1
A
CG
PCA
1
A
CG
PCA
1
1
Y
1
A
CD
PCA
1
A
CD
PCA
1
1
Y
1
A
OE
PCA
1
A
OE
PCA
1
1
Y
1
A
CG
LYS
19
A
CG
LYS
19
1
Y
1
A
CD
LYS
19
A
CD
LYS
19
1
Y
1
A
CE
LYS
19
A
CE
LYS
19
1
Y
1
A
NZ
LYS
19
A
NZ
LYS
19
1
Y
1
A
CD
LYS
28
A
CD
LYS
28
1
Y
1
A
CE
LYS
28
A
CE
LYS
28
1
Y
1
A
NZ
LYS
28
A
NZ
LYS
28
1
Y
1
A
CD
ARG
34
A
CD
ARG
34
1
Y
1
A
NE
ARG
34
A
NE
ARG
34
1
Y
1
A
CZ
ARG
34
A
CZ
ARG
34
1
Y
1
A
NH1
ARG
34
A
NH1
ARG
34
1
Y
1
A
NH2
ARG
34
A
NH2
ARG
34
1
Y
1
8.86
1.40
123.60
132.46
A
A
A
CD
NE
CZ
ARG
ARG
ARG
3
3
3
N
1
4.64
0.50
120.30
124.94
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
1
-4.09
0.50
120.30
116.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
3
3
3
N
1
-11.75
1.40
123.60
111.85
A
A
A
CD
NE
CZ
ARG
ARG
ARG
11
11
11
N
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
1
3.19
0.50
120.30
123.49
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
15
15
15
N
1
14.05
2.20
113.40
127.45
A
A
A
CA
CB
CG
GLN
GLN
GLN
27
27
27
N
1
-4.58
0.50
120.30
115.72
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
46
46
46
N
1
12.20
2.00
118.30
130.50
A
A
A
CG
CD
OE1
GLU
GLU
GLU
51
51
51
N
1
-5.04
0.50
120.30
115.26
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
54
54
54
N
0.169
2.2
7.0
1
2.2
7.0
59
561
25
0
477
0.027
0.020
0.036
0.020
0.049
0.040
1.43
1.000
2.35
2.000
3.40
2.000
5.18
2.500
0.023
0.020
0.186
0.300
0.271
0.300
0.220
0.300
4.4
10.0
23.1
15.0
20.4
20.0
refinement
PROLSQ
ALPHA-DENDROTOXIN
CRYSTAL STRUCTURE OF ALPHA-DENDROTOXIN FROM THE GREEN MAMBA VENOM AND ITS COMPARISON WITH THE STRUCTURE OF BOVINE PANCREATIC TRYPSIN INHIBITOR
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
ILE
50
A
ILE
50
HELX_P
A
ILE
58
A
ILE
58
1
H1
9
disulf
2.012
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
57
A
SG
CYS
57
1_555
disulf
2.086
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.011
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
53
A
SG
CYS
53
1_555
covale
1.340
both
A
PCA
1
A
C
PCA
1
1_555
A
PRO
2
A
N
PRO
2
1_555
PRESYNAPTIC NEUROTOXIN
PRESYNAPTIC NEUROTOXIN
IVBII_DENAN
UNP
1
1
P00980
QPRRKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTCIG
2
59
1DTX
2
59
P00980
A
1
2
59
2
anti-parallel
A
LYS
19
A
LYS
19
A
GLN
27
A
GLN
27
A
GLN
31
A
GLN
31
A
SER
38
A
SER
38
BINDING SITE FOR RESIDUE SO4 A 60
Software
6
BINDING SITE FOR RESIDUE SO4 A 61
Software
6
BINDING SITE FOR RESIDUE SO4 A 62
Software
5
BINDING SITE FOR RESIDUE SO4 A 63
Software
5
BINDING SITE FOR RESIDUE SO4 A 64
Software
5
A
ARG
3
A
ARG
3
6
3_555
A
ARG
4
A
ARG
4
6
3_555
A
ARG
15
A
ARG
15
6
1_555
A
CYS
40
A
CYS
40
6
1_555
A
GLY
41
A
GLY
41
6
1_555
A
HOH
84
G
HOH
6
3_555
A
ASN
12
A
ASN
12
6
1_555
A
GLY
14
A
GLY
14
6
1_555
A
ARG
15
A
ARG
15
6
1_555
A
GLY
41
A
GLY
41
6
1_555
A
GLY
42
A
GLY
42
6
1_555
A
HOH
65
G
HOH
6
1_555
A
HIS
10
A
HIS
10
5
1_556
A
LYS
30
A
LYS
30
5
2_555
A
ILE
50
A
ILE
50
5
1_555
A
ARG
54
A
ARG
54
5
1_555
A
HOH
72
G
HOH
5
1_555
A
ARG
4
A
ARG
4
5
1_555
A
LYS
5
A
LYS
5
5
1_555
A
TRP
37
A
TRP
37
5
3_545
A
HOH
73
G
HOH
5
3_545
A
HOH
96
G
HOH
5
1_555
A
TYR
17
A
TYR
17
5
3_545
A
TRP
37
A
TRP
37
5
1_555
A
ARG
46
A
ARG
46
5
1_555
A
PHE
47
A
PHE
47
5
1_555
A
LYS
48
A
LYS
48
5
1_555
19
P 21 21 21