0.011542 0.006664 0.000000 0.000000 0.013328 0.000000 0.000000 0.000000 0.016069 0.00000 0.00000 0.00000 Larsson, G. Svensson, L.A. Nyman, P.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 86.640 86.640 62.230 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H14 N2 O11 P2 388.162 DEOXYURIDINE-5'-DIPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 N C N 90 N N N 91 N C N 92 N C N 93 N C N 94 N O N 95 N O N 96 R C N 97 N C N 98 S C N 99 R C N 100 N O N 101 N O N 102 N C N 103 N O N 104 S P N 105 N O N 106 N O N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N N N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 N C N 167 N C N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C Y 180 N C Y 181 N N Y 182 N C Y 183 N C Y 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 S C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N C N 251 N N N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N S N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N C N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N O N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 R C N 347 N O N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N N Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C N 397 N O N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C N 415 N C N 416 N C N 417 N O N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub N 292 N sing Y 293 N doub N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N doub Y 361 N sing Y 362 N sing N 363 N sing Y 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub N 389 N sing Y 390 N doub N 391 N sing Y 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 532 538 10.1038/nsb0696-532 8646539 Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP). 1996 10.2210/pdb1dud/pdb pdb_00001dud 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 AREA DETECTOR SIEMENS M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 16302.615 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 3.6.1.23 1 nat polymer 388.162 DEOXYURIDINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 94 nat water no no MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 2.76 55.36 pdbx_database_status struct_conf struct_conf_type chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Derived calculations Version format compliance Derived calculations Other Data collection Database references Derived calculations 1 0 1996-11-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2024-02-07 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-04-30 REL REL DUD DEOXYURIDINE-5'-DIPHOSPHATE HOH water SECONDARY STRUCTURE BOUNDARIES AS DETERMINED FOR THE MODEL OF UNCOMPLEXED D-UTPASE (1DUP). DUD 150 2 DUD DUD 153 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 215 3 HOH HOH 215 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 250 3 HOH HOH 250 A HOH 253 3 HOH HOH 253 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 266 3 HOH HOH 266 A HOH 268 3 HOH HOH 268 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 299 3 HOH HOH 299 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 309 3 HOH HOH 309 A HOH 311 3 HOH HOH 311 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 317 3 HOH HOH 317 A HOH 321 3 HOH HOH 321 A HOH 324 3 HOH HOH 324 A HOH 326 3 HOH HOH 326 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 339 3 HOH HOH 339 A HOH 341 3 HOH HOH 341 A HOH 346 3 HOH HOH 346 A HOH 348 3 HOH HOH 348 A HOH 359 3 HOH HOH 359 A HOH 361 3 HOH HOH 361 A HOH 365 3 HOH HOH 365 A HOH 369 3 HOH HOH 369 A HOH 371 3 HOH HOH 371 A HOH 373 3 HOH HOH 373 A HOH 380 3 HOH HOH 380 A HOH 385 3 HOH HOH 385 A HOH 390 3 HOH HOH 390 A HOH 391 3 HOH HOH 391 A HOH 392 3 HOH HOH 392 A MET 1 n 1 MET 1 A MET 2 n 2 MET 2 A LYS 3 n 3 LYS 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A ASP 6 n 6 ASP 6 A VAL 7 n 7 VAL 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A LEU 10 n 10 LEU 10 A ASP 11 n 11 ASP 11 A PRO 12 n 12 PRO 12 A ARG 13 n 13 ARG 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A GLU 17 n 17 GLU 17 A PHE 18 n 18 PHE 18 A PRO 19 n 19 PRO 19 A LEU 20 n 20 LEU 20 A PRO 21 n 21 PRO 21 A THR 22 n 22 THR 22 A TYR 23 n 23 TYR 23 A ALA 24 n 24 ALA 24 A THR 25 n 25 THR 25 A SER 26 n 26 SER 26 A GLY 27 n 27 GLY 27 A SER 28 n 28 SER 28 A ALA 29 n 29 ALA 29 A GLY 30 n 30 GLY 30 A LEU 31 n 31 LEU 31 A ASP 32 n 32 ASP 32 A LEU 33 n 33 LEU 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A CYS 36 n 36 CYS 36 A LEU 37 n 37 LEU 37 A ASN 38 n 38 ASN 38 A ASP 39 n 39 ASP 39 A ALA 40 n 40 ALA 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A ALA 44 n 44 ALA 44 A PRO 45 n 45 PRO 45 A GLY 46 n 46 GLY 46 A ASP 47 n 47 ASP 47 A THR 48 n 48 THR 48 A THR 49 n 49 THR 49 A LEU 50 n 50 LEU 50 A VAL 51 n 51 VAL 51 A PRO 52 n 52 PRO 52 A THR 53 n 53 THR 53 A GLY 54 n 54 GLY 54 A LEU 55 n 55 LEU 55 A ALA 56 n 56 ALA 56 A ILE 57 n 57 ILE 57 A HIS 58 n 58 HIS 58 A ILE 59 n 59 ILE 59 A ALA 60 n 60 ALA 60 A ASP 61 n 61 ASP 61 A PRO 62 n 62 PRO 62 A SER 63 n 63 SER 63 A LEU 64 n 64 LEU 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A MET 67 n 67 MET 67 A MET 68 n 68 MET 68 A LEU 69 n 69 LEU 69 A PRO 70 n 70 PRO 70 A ARG 71 n 71 ARG 71 A SER 72 n 72 SER 72 A GLY 73 n 73 GLY 73 A LEU 74 n 74 LEU 74 A GLY 75 n 75 GLY 75 A HIS 76 n 76 HIS 76 A LYS 77 n 77 LYS 77 A HIS 78 n 78 HIS 78 A GLY 79 n 79 GLY 79 A ILE 80 n 80 ILE 80 A VAL 81 n 81 VAL 81 A LEU 82 n 82 LEU 82 A GLY 83 n 83 GLY 83 A ASN 84 n 84 ASN 84 A LEU 85 n 85 LEU 85 A VAL 86 n 86 VAL 86 A GLY 87 n 87 GLY 87 A LEU 88 n 88 LEU 88 A ILE 89 n 89 ILE 89 A ASP 90 n 90 ASP 90 A SER 91 n 91 SER 91 A ASP 92 n 92 ASP 92 A TYR 93 n 93 TYR 93 A GLN 94 n 94 GLN 94 A GLY 95 n 95 GLY 95 A GLN 96 n 96 GLN 96 A LEU 97 n 97 LEU 97 A MET 98 n 98 MET 98 A ILE 99 n 99 ILE 99 A SER 100 n 100 SER 100 A VAL 101 n 101 VAL 101 A TRP 102 n 102 TRP 102 A ASN 103 n 103 ASN 103 A ARG 104 n 104 ARG 104 A GLY 105 n 105 GLY 105 A GLN 106 n 106 GLN 106 A ASP 107 n 107 ASP 107 A SER 108 n 108 SER 108 A PHE 109 n 109 PHE 109 A THR 110 n 110 THR 110 A ILE 111 n 111 ILE 111 A GLN 112 n 112 GLN 112 A PRO 113 n 113 PRO 113 A GLY 114 n 114 GLY 114 A GLU 115 n 115 GLU 115 A ARG 116 n 116 ARG 116 A ILE 117 n 117 ILE 117 A ALA 118 n 118 ALA 118 A GLN 119 n 119 GLN 119 A MET 120 n 120 MET 120 A ILE 121 n 121 ILE 121 A PHE 122 n 122 PHE 122 A VAL 123 n 123 VAL 123 A PRO 124 n 124 PRO 124 A VAL 125 n 125 VAL 125 A VAL 126 n 126 VAL 126 A GLN 127 n 127 GLN 127 A ALA 128 n 128 ALA 128 A GLU 129 n 129 GLU 129 A PHE 130 n 130 PHE 130 A ASN 131 n 131 ASN 131 A LEU 132 n 132 LEU 132 A VAL 133 n 133 VAL 133 A GLU 134 n 134 GLU 134 A ASP 135 n 135 ASP 135 A PHE 136 n 136 PHE 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A author_and_software_defined_assembly PISA,PQS 3 trimeric 11920 -74 15890 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 43.3200000000 75.0324409839 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -43.3200000000 75.0324409839 0.0000000000 A O ASP 6 A O ASP 6 A N HIS 58 A N HIS 58 A O VAL 51 A O VAL 51 A N MET 98 A N MET 98 A O SER 100 A O SER 100 A N GLY 83 A N GLY 83 A O LEU 31 A O LEU 31 A N MET 120 A N MET 120 A O VAL 123 A O VAL 123 A N ALA 65 A N ALA 65 A O MET 68 A O MET 68 A N GLY 87 A N GLY 87 A O LEU 43 A O LEU 43 A N PHE 109 A N PHE 109 1 A ASP 137 A ASP 137 1 Y 1 A ALA 138 A ALA 138 1 Y 1 A THR 139 A THR 139 1 Y 1 A ASP 140 A ASP 140 1 Y 1 A ARG 141 A ARG 141 1 Y 1 A GLY 142 A GLY 142 1 Y 1 A GLU 143 A GLU 143 1 Y 1 A GLY 144 A GLY 144 1 Y 1 A GLY 145 A GLY 145 1 Y 1 A PHE 146 A PHE 146 1 Y 1 A GLY 147 A GLY 147 1 Y 1 A HIS 148 A HIS 148 1 Y 1 A SER 149 A SER 149 1 Y 1 A GLY 150 A GLY 150 1 Y 1 A ARG 151 A ARG 151 1 Y 1 A GLN 152 A GLN 152 1 Y 1 -4.00 0.50 120.30 116.30 A A A NE CZ NH2 ARG ARG ARG 34 34 34 N 1 -9.73 1.60 100.20 90.47 A A A CG SD CE MET MET MET 67 67 67 N 1 3.44 0.50 120.30 123.74 A A A NE CZ NH1 ARG ARG ARG 71 71 71 N 1 -5.39 0.50 120.30 114.91 A A A NE CZ NH2 ARG ARG ARG 71 71 71 N 1 -11.30 1.60 110.90 99.60 A A A CG1 CB CG2 VAL VAL VAL 81 81 81 N 1 -4.07 0.60 121.00 116.93 A A A CB CG CD1 TYR TYR TYR 93 93 93 N 1 6.39 0.80 106.30 112.69 A A A CD1 CG CD2 TRP TRP TRP 102 102 102 N 1 -6.18 0.80 107.30 101.12 A A A CE2 CD2 CG TRP TRP TRP 102 102 102 N 1 3.86 0.50 120.30 124.16 A A A NE CZ NH1 ARG ARG ARG 104 104 104 N 1 -3.27 0.50 120.30 117.03 A A A NE CZ NH2 ARG ARG ARG 104 104 104 N 1 A A NE2 CD2 HIS HIS 58 58 -0.076 0.011 1.373 1.297 N 1 A A NE2 CD2 HIS HIS 76 76 -0.067 0.011 1.373 1.306 N 1 A A NE2 CD2 HIS HIS 78 78 -0.079 0.011 1.373 1.294 N 1 A LYS 16 -102.15 -64.87 1 A ALA 60 54.24 -14.71 1 A LEU 85 60.71 -55.08 PARAM119X.PRO TOPH19X.PRO PARAM11.DNA TOPH11.DNA 23.4 0.2000000 0.2000000 2.3 10.0 7520 98.2 1 1.0 10.0 0.23 2.3 10.0 94 1145 24 0 1027 0.017 3.3 27.9 1.35 1.5 2.0 2.0 2.5 0.2580000 2.40 924 96. 24.9 2.25 1DUD 7520 0.0720000 1 67. model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction XDS phasing X-PLOR 3.1 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDE HYDROLASE (D-UTPASE) COMPLEXED WITH THE SUBSTRATE ANALOGUE DEOXYURIDINE 5'-DIPHOSPHATE (D-UDP) 1 N N 2 N N 3 N N A SER 72 A SER 72 HELX_P A HIS 78 A HIS 78 1 H1 7 HYDROLASE HYDROLASE, NUCLEOTIDE METABOLISM, D-UTPASE, SUBSTRATE ANALOGUE, D-UDP COMPLEX DUT_ECOLI UNP 1 1 P06968 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIV LGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ 1 151 1DUD 2 152 P06968 A 1 2 152 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 3 A LYS 3 A LEU 10 A LEU 10 A ASP 47 A ASP 47 A HIS 58 A HIS 58 A LEU 97 A LEU 97 A ARG 104 A ARG 104 A GLY 79 A GLY 79 A GLY 83 A GLY 83 A LEU 31 A LEU 31 A ALA 35 A ALA 35 A GLY 114 A GLY 114 A VAL 125 A VAL 125 A SER 63 A SER 63 A LEU 69 A LEU 69 A GLY 87 A GLY 87 A ILE 89 A ILE 89 A VAL 41 A VAL 41 A LEU 43 A LEU 43 A PHE 109 A PHE 109 A ILE 111 A ILE 111 BINDING SITE FOR RESIDUE DUD A 153 A DUD 153 Software 17 A MET 68 A MET 68 17 1_555 A SER 72 A SER 72 17 3_565 A GLY 73 A GLY 73 17 3_565 A ASN 84 A ASN 84 17 1_555 A GLY 87 A GLY 87 17 1_555 A LEU 88 A LEU 88 17 1_555 A ILE 89 A ILE 89 17 1_555 A ASP 90 A ASP 90 17 1_555 A TYR 93 A TYR 93 17 1_555 A GLN 96 A GLN 96 17 1_555 A MET 98 A MET 98 17 1_555 A GLN 119 A GLN 119 17 3_565 A HOH 235 C HOH 17 3_565 A HOH 271 C HOH 17 1_555 A HOH 359 C HOH 17 1_555 A HOH 390 C HOH 17 1_555 A HOH 392 C HOH 17 1_555 146 H 3