0.011546
0.006666
0.000000
0.000000
0.013332
0.000000
0.000000
0.000000
0.016059
0.00000
0.00000
0.00000
Dauter, Z.
Wilson, K.S.
Larsson, G.
Nyman, P.O.
Cedergren, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
86.610
86.610
62.270
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Nature
NATUAS
0006
0028-0836
355
740
743
10.1038/355740a0
1311056
Crystal structure of a dUTPase.
1992
10.2210/pdb1dup/pdb
pdb_00001dup
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
16302.615
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
3.6.1.23
1
nat
polymer
18.015
water
123
nat
water
D-UTPASE
no
no
MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI
VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI
VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
S2
562
Escherichia coli
2.76
55.36
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Advisory
Data collection
Database references
1
0
1995-11-14
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
1995-09-01
REL
REL
HOH
water
SECONDARY STRUCTURE BOUNDARIES HAVE BEEN DETERMINED USING
SS PROGRAM (V.S.LAMZIN, EMBL HAMBURG) AS DESCRIBED IN
V.S.LAMZIN,Z.DAUTER,V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON
J.MOL.BIOL. (1994) V.236, 759-785
STRAND 2 IN SHEET S2 IS SPLIT INTO S2A (GLY 114 - ILE 117).
HOH
1
2
HOH
HOH
153
A
HOH
2
2
HOH
HOH
154
A
HOH
3
2
HOH
HOH
155
A
HOH
4
2
HOH
HOH
156
A
HOH
5
2
HOH
HOH
157
A
HOH
6
2
HOH
HOH
158
A
HOH
7
2
HOH
HOH
159
A
HOH
8
2
HOH
HOH
160
A
HOH
9
2
HOH
HOH
161
A
HOH
10
2
HOH
HOH
162
A
HOH
11
2
HOH
HOH
163
A
HOH
12
2
HOH
HOH
164
A
HOH
13
2
HOH
HOH
165
A
HOH
14
2
HOH
HOH
166
A
HOH
15
2
HOH
HOH
167
A
HOH
16
2
HOH
HOH
168
A
HOH
17
2
HOH
HOH
169
A
HOH
18
2
HOH
HOH
170
A
HOH
19
2
HOH
HOH
171
A
HOH
20
2
HOH
HOH
172
A
HOH
21
2
HOH
HOH
173
A
HOH
22
2
HOH
HOH
174
A
HOH
23
2
HOH
HOH
175
A
HOH
24
2
HOH
HOH
176
A
HOH
25
2
HOH
HOH
177
A
HOH
26
2
HOH
HOH
178
A
HOH
27
2
HOH
HOH
179
A
HOH
28
2
HOH
HOH
180
A
HOH
29
2
HOH
HOH
181
A
HOH
30
2
HOH
HOH
182
A
HOH
31
2
HOH
HOH
183
A
HOH
32
2
HOH
HOH
184
A
HOH
33
2
HOH
HOH
185
A
HOH
34
2
HOH
HOH
186
A
HOH
35
2
HOH
HOH
187
A
HOH
36
2
HOH
HOH
188
A
HOH
37
2
HOH
HOH
189
A
HOH
38
2
HOH
HOH
190
A
HOH
39
2
HOH
HOH
191
A
HOH
40
2
HOH
HOH
192
A
HOH
41
2
HOH
HOH
193
A
HOH
42
2
HOH
HOH
194
A
HOH
43
2
HOH
HOH
195
A
HOH
44
2
HOH
HOH
196
A
HOH
45
2
HOH
HOH
197
A
HOH
46
2
HOH
HOH
198
A
HOH
47
2
HOH
HOH
199
A
HOH
48
2
HOH
HOH
200
A
HOH
49
2
HOH
HOH
201
A
HOH
50
2
HOH
HOH
202
A
HOH
51
2
HOH
HOH
203
A
HOH
52
2
HOH
HOH
204
A
HOH
53
2
HOH
HOH
205
A
HOH
54
2
HOH
HOH
206
A
HOH
55
2
HOH
HOH
207
A
HOH
56
2
HOH
HOH
208
A
HOH
57
2
HOH
HOH
209
A
HOH
58
2
HOH
HOH
210
A
HOH
59
2
HOH
HOH
211
A
HOH
60
2
HOH
HOH
212
A
HOH
61
2
HOH
HOH
213
A
HOH
62
2
HOH
HOH
214
A
HOH
63
2
HOH
HOH
215
A
HOH
64
2
HOH
HOH
216
A
HOH
65
2
HOH
HOH
217
A
HOH
66
2
HOH
HOH
218
A
HOH
67
2
HOH
HOH
219
A
HOH
68
2
HOH
HOH
220
A
HOH
69
2
HOH
HOH
221
A
HOH
70
2
HOH
HOH
222
A
HOH
71
2
HOH
HOH
223
A
HOH
72
2
HOH
HOH
224
A
HOH
73
2
HOH
HOH
225
A
HOH
74
2
HOH
HOH
226
A
HOH
75
2
HOH
HOH
227
A
HOH
76
2
HOH
HOH
228
A
HOH
77
2
HOH
HOH
229
A
HOH
78
2
HOH
HOH
230
A
HOH
79
2
HOH
HOH
231
A
HOH
80
2
HOH
HOH
232
A
HOH
81
2
HOH
HOH
233
A
HOH
82
2
HOH
HOH
234
A
HOH
83
2
HOH
HOH
235
A
HOH
84
2
HOH
HOH
236
A
HOH
85
2
HOH
HOH
237
A
HOH
86
2
HOH
HOH
238
A
HOH
87
2
HOH
HOH
239
A
HOH
88
2
HOH
HOH
240
A
HOH
89
2
HOH
HOH
241
A
HOH
90
2
HOH
HOH
242
A
HOH
91
2
HOH
HOH
243
A
HOH
92
2
HOH
HOH
244
A
HOH
93
2
HOH
HOH
245
A
HOH
94
2
HOH
HOH
246
A
HOH
95
2
HOH
HOH
247
A
HOH
96
2
HOH
HOH
248
A
HOH
97
2
HOH
HOH
249
A
HOH
98
2
HOH
HOH
250
A
HOH
99
2
HOH
HOH
251
A
HOH
100
2
HOH
HOH
252
A
HOH
101
2
HOH
HOH
253
A
HOH
102
2
HOH
HOH
254
A
HOH
103
2
HOH
HOH
255
A
HOH
104
2
HOH
HOH
256
A
HOH
105
2
HOH
HOH
257
A
HOH
106
2
HOH
HOH
258
A
HOH
107
2
HOH
HOH
259
A
HOH
108
2
HOH
HOH
260
A
HOH
109
2
HOH
HOH
261
A
HOH
110
2
HOH
HOH
262
A
HOH
111
2
HOH
HOH
263
A
HOH
112
2
HOH
HOH
264
A
HOH
113
2
HOH
HOH
265
A
HOH
114
2
HOH
HOH
266
A
HOH
115
2
HOH
HOH
267
A
HOH
116
2
HOH
HOH
268
A
HOH
117
2
HOH
HOH
269
A
HOH
118
2
HOH
HOH
270
A
HOH
119
2
HOH
HOH
271
A
HOH
120
2
HOH
HOH
272
A
HOH
121
2
HOH
HOH
273
A
HOH
122
2
HOH
HOH
274
A
HOH
123
2
HOH
HOH
275
A
MET
1
n
1
MET
1
A
MET
2
n
2
MET
2
A
LYS
3
n
3
LYS
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
ASP
6
n
6
ASP
6
A
VAL
7
n
7
VAL
7
A
LYS
8
n
8
LYS
8
A
ILE
9
n
9
ILE
9
A
LEU
10
n
10
LEU
10
A
ASP
11
n
11
ASP
11
A
PRO
12
n
12
PRO
12
A
ARG
13
n
13
ARG
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
GLU
17
n
17
GLU
17
A
PHE
18
n
18
PHE
18
A
PRO
19
n
19
PRO
19
A
LEU
20
n
20
LEU
20
A
PRO
21
n
21
PRO
21
A
THR
22
n
22
THR
22
A
TYR
23
n
23
TYR
23
A
ALA
24
n
24
ALA
24
A
THR
25
n
25
THR
25
A
SER
26
n
26
SER
26
A
GLY
27
n
27
GLY
27
A
SER
28
n
28
SER
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
LEU
31
n
31
LEU
31
A
ASP
32
n
32
ASP
32
A
LEU
33
n
33
LEU
33
A
ARG
34
n
34
ARG
34
A
ALA
35
n
35
ALA
35
A
CYS
36
n
36
CYS
36
A
LEU
37
n
37
LEU
37
A
ASN
38
n
38
ASN
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
VAL
41
n
41
VAL
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
ALA
44
n
44
ALA
44
A
PRO
45
n
45
PRO
45
A
GLY
46
n
46
GLY
46
A
ASP
47
n
47
ASP
47
A
THR
48
n
48
THR
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
VAL
51
n
51
VAL
51
A
PRO
52
n
52
PRO
52
A
THR
53
n
53
THR
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
ALA
56
n
56
ALA
56
A
ILE
57
n
57
ILE
57
A
HIS
58
n
58
HIS
58
A
ILE
59
n
59
ILE
59
A
ALA
60
n
60
ALA
60
A
ASP
61
n
61
ASP
61
A
PRO
62
n
62
PRO
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
MET
67
n
67
MET
67
A
MET
68
n
68
MET
68
A
LEU
69
n
69
LEU
69
A
PRO
70
n
70
PRO
70
A
ARG
71
n
71
ARG
71
A
SER
72
n
72
SER
72
A
GLY
73
n
73
GLY
73
A
LEU
74
n
74
LEU
74
A
GLY
75
n
75
GLY
75
A
HIS
76
n
76
HIS
76
A
LYS
77
n
77
LYS
77
A
HIS
78
n
78
HIS
78
A
GLY
79
n
79
GLY
79
A
ILE
80
n
80
ILE
80
A
VAL
81
n
81
VAL
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
ASN
84
n
84
ASN
84
A
LEU
85
n
85
LEU
85
A
VAL
86
n
86
VAL
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
ILE
89
n
89
ILE
89
A
ASP
90
n
90
ASP
90
A
SER
91
n
91
SER
91
A
ASP
92
n
92
ASP
92
A
TYR
93
n
93
TYR
93
A
GLN
94
n
94
GLN
94
A
GLY
95
n
95
GLY
95
A
GLN
96
n
96
GLN
96
A
LEU
97
n
97
LEU
97
A
MET
98
n
98
MET
98
A
ILE
99
n
99
ILE
99
A
SER
100
n
100
SER
100
A
VAL
101
n
101
VAL
101
A
TRP
102
n
102
TRP
102
A
ASN
103
n
103
ASN
103
A
ARG
104
n
104
ARG
104
A
GLY
105
n
105
GLY
105
A
GLN
106
n
106
GLN
106
A
ASP
107
n
107
ASP
107
A
SER
108
n
108
SER
108
A
PHE
109
n
109
PHE
109
A
THR
110
n
110
THR
110
A
ILE
111
n
111
ILE
111
A
GLN
112
n
112
GLN
112
A
PRO
113
n
113
PRO
113
A
GLY
114
n
114
GLY
114
A
GLU
115
n
115
GLU
115
A
ARG
116
n
116
ARG
116
A
ILE
117
n
117
ILE
117
A
ALA
118
n
118
ALA
118
A
GLN
119
n
119
GLN
119
A
MET
120
n
120
MET
120
A
ILE
121
n
121
ILE
121
A
PHE
122
n
122
PHE
122
A
VAL
123
n
123
VAL
123
A
PRO
124
n
124
PRO
124
A
VAL
125
n
125
VAL
125
A
VAL
126
n
126
VAL
126
A
GLN
127
n
127
GLN
127
A
ALA
128
n
128
ALA
128
A
GLU
129
n
129
GLU
129
A
PHE
130
n
130
PHE
130
A
ASN
131
n
131
ASN
131
A
LEU
132
n
132
LEU
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
ASP
135
n
135
ASP
135
A
PHE
136
n
136
PHE
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
9890
-73
16440
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
43.3050000000
75.0064602218
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-43.3050000000
75.0064602218
0.0000000000
A
O
ASP
6
A
O
ASP
6
A
N
HIS
58
A
N
HIS
58
A
O
VAL
51
A
O
VAL
51
A
N
MET
98
A
N
MET
98
A
O
SER
100
A
O
SER
100
A
N
GLY
83
A
N
GLY
83
A
O
LEU
31
A
O
LEU
31
A
N
MET
120
A
N
MET
120
A
O
VAL
123
A
O
VAL
123
A
N
ALA
65
A
N
ALA
65
A
O
MET
68
A
O
MET
68
A
N
GLY
87
A
N
GLY
87
A
O
LEU
43
A
O
LEU
43
A
N
PHE
109
A
N
PHE
109
1
A
HOH
188
B
HOH
1
A
HOH
231
B
HOH
1
A
CE
LYS
3
A
CE
LYS
3
0
Y
1
A
NZ
LYS
3
A
NZ
LYS
3
0
Y
1
A
CD
LYS
4
A
CD
LYS
4
0
Y
1
A
CE
LYS
4
A
CE
LYS
4
0
Y
1
A
NZ
LYS
4
A
NZ
LYS
4
0
Y
1
A
CE
LYS
16
A
CE
LYS
16
0
Y
1
A
NZ
LYS
16
A
NZ
LYS
16
0
Y
1
A
CE
LYS
77
A
CE
LYS
77
0
Y
1
A
NZ
LYS
77
A
NZ
LYS
77
0
Y
1
A
CG
GLN
106
A
CG
GLN
106
0
Y
1
A
CD
GLN
106
A
CD
GLN
106
0
Y
1
A
OE1
GLN
106
A
OE1
GLN
106
0
Y
1
A
NE2
GLN
106
A
NE2
GLN
106
0
Y
1
A
CD
GLU
129
A
CD
GLU
129
0
Y
1
A
OE1
GLU
129
A
OE1
GLU
129
0
Y
1
A
OE2
GLU
129
A
OE2
GLU
129
0
Y
1
A
ASP
137
A
ASP
137
1
Y
1
A
ALA
138
A
ALA
138
1
Y
1
A
THR
139
A
THR
139
1
Y
1
A
ASP
140
A
ASP
140
1
Y
1
A
ARG
141
A
ARG
141
1
Y
1
A
GLY
142
A
GLY
142
1
Y
1
A
GLU
143
A
GLU
143
1
Y
1
A
GLY
144
A
GLY
144
1
Y
1
A
GLY
145
A
GLY
145
1
Y
1
A
PHE
146
A
PHE
146
1
Y
1
A
GLY
147
A
GLY
147
1
Y
1
A
HIS
148
A
HIS
148
1
Y
1
A
SER
149
A
SER
149
1
Y
1
A
GLY
150
A
GLY
150
1
Y
1
A
ARG
151
A
ARG
151
1
Y
1
A
GLN
152
A
GLN
152
1
Y
1
22.21
1.60
100.20
122.41
A
A
A
CG
SD
CE
MET
MET
MET
1
1
1
N
1
-14.52
2.20
117.20
102.68
A
A
A
CA
C
N
MET
MET
LYS
2
2
3
Y
1
12.07
1.60
122.70
134.77
A
A
A
O
C
N
MET
MET
LYS
2
2
3
Y
1
21.57
2.60
111.60
133.17
A
A
A
CB
CG
CD
LYS
LYS
LYS
4
4
4
N
1
10.79
1.20
123.30
134.09
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
17
17
17
N
1
-7.99
0.50
120.30
112.31
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
34
34
34
N
1
5.45
0.50
120.30
125.75
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
71
71
71
N
1
-8.17
0.50
120.30
112.13
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
71
71
71
N
1
-9.75
1.50
110.50
100.75
A
A
A
N
CA
CB
SER
SER
SER
72
72
72
N
1
5.82
0.90
118.30
124.12
A
A
A
CB
CG
OD1
ASP
ASP
ASP
90
90
90
N
1
25.42
2.60
111.60
137.02
A
A
A
CB
CG
CD
GLN
GLN
GLN
106
106
106
N
1
3.36
0.50
120.30
123.66
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
116
116
116
N
1
-20.51
2.70
114.20
93.69
A
A
A
CB
CG
CD
GLU
GLU
GLU
129
129
129
N
1
A
A
CG
CD
LYS
LYS
4
4
-0.387
0.034
1.520
1.133
N
1
A
A
CD
CE
LYS
LYS
77
77
-0.206
0.025
1.508
1.302
N
1
A
A
CG
CD
GLN
GLN
106
106
-0.225
0.023
1.506
1.281
N
1
A
A
CG
CD
GLU
GLU
129
129
0.225
0.015
1.515
1.740
N
1
A
LYS
16
-107.00
-70.69
1
A
ALA
60
69.07
-38.40
1
A
LEU
85
70.90
-60.79
0.1500000
1.9
10.0
13597
98.9
1
0.0
1.9
10.0
123
1150
0
0
1027
0.017
0.020
0.044
0.040
0.047
0.050
2.4
2.0
3.4
3.0
5.6
4.0
7.8
5.0
0.015
0.020
0.180
0.150
0.186
0.300
0.263
0.300
0.194
0.300
2.8
3.0
15.6
15.0
31.7
20.0
model building
ARP/wARP
refinement
PROLSQ
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE (D-UTPASE)
1
N
N
2
N
N
THE STRUCTURE IS BUILT-UP OF TIGHT TRIMERS AROUND THE
CRYSTALLOGRAPHIC THREE-FOLD AXIS.
MTRIX
THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW
DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE
VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE
MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL
YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED
SECOND.
APPLIED TO TRANSFORMED TO
MTRIX RESIDUES RESIDUES RMSD
M1 A 1 .. A 136 1 .. 136
M2 A 1 .. A 136 1 .. 136
THESE TRANSFORMATIONS WILL YIELD THE COORDINATES FOR THE
TWO OTHER SUBUNITS OF THE TRIMER.
A
SER
72
A
SER
72
HELX_P
A
HIS
78
A
HIS
78
1
H1
7
HYDROLASE
HYDROLASE, NUCLEOTIDE METABOLISM
DUT_ECOLI
UNP
1
1
P06968
MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIV
LGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
1
151
1DUP
2
152
P06968
A
1
2
152
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
3
A
LYS
3
A
LEU
10
A
LEU
10
A
ASP
47
A
ASP
47
A
HIS
58
A
HIS
58
A
LEU
97
A
LEU
97
A
ARG
104
A
ARG
104
A
GLY
79
A
GLY
79
A
GLY
83
A
GLY
83
A
LEU
31
A
LEU
31
A
ALA
35
A
ALA
35
A
GLY
114
A
GLY
114
A
VAL
125
A
VAL
125
A
SER
63
A
SER
63
A
LEU
69
A
LEU
69
A
GLY
87
A
GLY
87
A
ILE
89
A
ILE
89
A
VAL
41
A
VAL
41
A
LEU
43
A
LEU
43
A
PHE
109
A
PHE
109
A
ILE
111
A
ILE
111
146
H 3