0.011546 0.006666 0.000000 0.000000 0.013332 0.000000 0.000000 0.000000 0.016059 0.00000 0.00000 0.00000 Dauter, Z. Wilson, K.S. Larsson, G. Nyman, P.O. Cedergren, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 86.610 86.610 62.270 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Nature NATUAS 0006 0028-0836 355 740 743 10.1038/355740a0 1311056 Crystal structure of a dUTPase. 1992 10.2210/pdb1dup/pdb pdb_00001dup 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 16302.615 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 3.6.1.23 1 nat polymer 18.015 water 123 nat water D-UTPASE no no MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGI VLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample S2 562 Escherichia coli 2.76 55.36 pdbx_unobs_or_zero_occ_atoms chem_comp_atom chem_comp_bond database_2 pdbx_unobs_or_zero_occ_atoms repository Initial release Version format compliance Derived calculations Version format compliance Advisory Advisory Data collection Database references 1 0 1995-11-14 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1995-09-01 REL REL HOH water SECONDARY STRUCTURE BOUNDARIES HAVE BEEN DETERMINED USING SS PROGRAM (V.S.LAMZIN, EMBL HAMBURG) AS DESCRIBED IN V.S.LAMZIN,Z.DAUTER,V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON J.MOL.BIOL. (1994) V.236, 759-785 STRAND 2 IN SHEET S2 IS SPLIT INTO S2A (GLY 114 - ILE 117). HOH 1 2 HOH HOH 153 A HOH 2 2 HOH HOH 154 A HOH 3 2 HOH HOH 155 A HOH 4 2 HOH HOH 156 A HOH 5 2 HOH HOH 157 A HOH 6 2 HOH HOH 158 A HOH 7 2 HOH HOH 159 A HOH 8 2 HOH HOH 160 A HOH 9 2 HOH HOH 161 A HOH 10 2 HOH HOH 162 A HOH 11 2 HOH HOH 163 A HOH 12 2 HOH HOH 164 A HOH 13 2 HOH HOH 165 A HOH 14 2 HOH HOH 166 A HOH 15 2 HOH HOH 167 A HOH 16 2 HOH HOH 168 A HOH 17 2 HOH HOH 169 A HOH 18 2 HOH HOH 170 A HOH 19 2 HOH HOH 171 A HOH 20 2 HOH HOH 172 A HOH 21 2 HOH HOH 173 A HOH 22 2 HOH HOH 174 A HOH 23 2 HOH HOH 175 A HOH 24 2 HOH HOH 176 A HOH 25 2 HOH HOH 177 A HOH 26 2 HOH HOH 178 A HOH 27 2 HOH HOH 179 A HOH 28 2 HOH HOH 180 A HOH 29 2 HOH HOH 181 A HOH 30 2 HOH HOH 182 A HOH 31 2 HOH HOH 183 A HOH 32 2 HOH HOH 184 A HOH 33 2 HOH HOH 185 A HOH 34 2 HOH HOH 186 A HOH 35 2 HOH HOH 187 A HOH 36 2 HOH HOH 188 A HOH 37 2 HOH HOH 189 A HOH 38 2 HOH HOH 190 A HOH 39 2 HOH HOH 191 A HOH 40 2 HOH HOH 192 A HOH 41 2 HOH HOH 193 A HOH 42 2 HOH HOH 194 A HOH 43 2 HOH HOH 195 A HOH 44 2 HOH HOH 196 A HOH 45 2 HOH HOH 197 A HOH 46 2 HOH HOH 198 A HOH 47 2 HOH HOH 199 A HOH 48 2 HOH HOH 200 A HOH 49 2 HOH HOH 201 A HOH 50 2 HOH HOH 202 A HOH 51 2 HOH HOH 203 A HOH 52 2 HOH HOH 204 A HOH 53 2 HOH HOH 205 A HOH 54 2 HOH HOH 206 A HOH 55 2 HOH HOH 207 A HOH 56 2 HOH HOH 208 A HOH 57 2 HOH HOH 209 A HOH 58 2 HOH HOH 210 A HOH 59 2 HOH HOH 211 A HOH 60 2 HOH HOH 212 A HOH 61 2 HOH HOH 213 A HOH 62 2 HOH HOH 214 A HOH 63 2 HOH HOH 215 A HOH 64 2 HOH HOH 216 A HOH 65 2 HOH HOH 217 A HOH 66 2 HOH HOH 218 A HOH 67 2 HOH HOH 219 A HOH 68 2 HOH HOH 220 A HOH 69 2 HOH HOH 221 A HOH 70 2 HOH HOH 222 A HOH 71 2 HOH HOH 223 A HOH 72 2 HOH HOH 224 A HOH 73 2 HOH HOH 225 A HOH 74 2 HOH HOH 226 A HOH 75 2 HOH HOH 227 A HOH 76 2 HOH HOH 228 A HOH 77 2 HOH HOH 229 A HOH 78 2 HOH HOH 230 A HOH 79 2 HOH HOH 231 A HOH 80 2 HOH HOH 232 A HOH 81 2 HOH HOH 233 A HOH 82 2 HOH HOH 234 A HOH 83 2 HOH HOH 235 A HOH 84 2 HOH HOH 236 A HOH 85 2 HOH HOH 237 A HOH 86 2 HOH HOH 238 A HOH 87 2 HOH HOH 239 A HOH 88 2 HOH HOH 240 A HOH 89 2 HOH HOH 241 A HOH 90 2 HOH HOH 242 A HOH 91 2 HOH HOH 243 A HOH 92 2 HOH HOH 244 A HOH 93 2 HOH HOH 245 A HOH 94 2 HOH HOH 246 A HOH 95 2 HOH HOH 247 A HOH 96 2 HOH HOH 248 A HOH 97 2 HOH HOH 249 A HOH 98 2 HOH HOH 250 A HOH 99 2 HOH HOH 251 A HOH 100 2 HOH HOH 252 A HOH 101 2 HOH HOH 253 A HOH 102 2 HOH HOH 254 A HOH 103 2 HOH HOH 255 A HOH 104 2 HOH HOH 256 A HOH 105 2 HOH HOH 257 A HOH 106 2 HOH HOH 258 A HOH 107 2 HOH HOH 259 A HOH 108 2 HOH HOH 260 A HOH 109 2 HOH HOH 261 A HOH 110 2 HOH HOH 262 A HOH 111 2 HOH HOH 263 A HOH 112 2 HOH HOH 264 A HOH 113 2 HOH HOH 265 A HOH 114 2 HOH HOH 266 A HOH 115 2 HOH HOH 267 A HOH 116 2 HOH HOH 268 A HOH 117 2 HOH HOH 269 A HOH 118 2 HOH HOH 270 A HOH 119 2 HOH HOH 271 A HOH 120 2 HOH HOH 272 A HOH 121 2 HOH HOH 273 A HOH 122 2 HOH HOH 274 A HOH 123 2 HOH HOH 275 A MET 1 n 1 MET 1 A MET 2 n 2 MET 2 A LYS 3 n 3 LYS 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A ASP 6 n 6 ASP 6 A VAL 7 n 7 VAL 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A LEU 10 n 10 LEU 10 A ASP 11 n 11 ASP 11 A PRO 12 n 12 PRO 12 A ARG 13 n 13 ARG 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A GLU 17 n 17 GLU 17 A PHE 18 n 18 PHE 18 A PRO 19 n 19 PRO 19 A LEU 20 n 20 LEU 20 A PRO 21 n 21 PRO 21 A THR 22 n 22 THR 22 A TYR 23 n 23 TYR 23 A ALA 24 n 24 ALA 24 A THR 25 n 25 THR 25 A SER 26 n 26 SER 26 A GLY 27 n 27 GLY 27 A SER 28 n 28 SER 28 A ALA 29 n 29 ALA 29 A GLY 30 n 30 GLY 30 A LEU 31 n 31 LEU 31 A ASP 32 n 32 ASP 32 A LEU 33 n 33 LEU 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A CYS 36 n 36 CYS 36 A LEU 37 n 37 LEU 37 A ASN 38 n 38 ASN 38 A ASP 39 n 39 ASP 39 A ALA 40 n 40 ALA 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A ALA 44 n 44 ALA 44 A PRO 45 n 45 PRO 45 A GLY 46 n 46 GLY 46 A ASP 47 n 47 ASP 47 A THR 48 n 48 THR 48 A THR 49 n 49 THR 49 A LEU 50 n 50 LEU 50 A VAL 51 n 51 VAL 51 A PRO 52 n 52 PRO 52 A THR 53 n 53 THR 53 A GLY 54 n 54 GLY 54 A LEU 55 n 55 LEU 55 A ALA 56 n 56 ALA 56 A ILE 57 n 57 ILE 57 A HIS 58 n 58 HIS 58 A ILE 59 n 59 ILE 59 A ALA 60 n 60 ALA 60 A ASP 61 n 61 ASP 61 A PRO 62 n 62 PRO 62 A SER 63 n 63 SER 63 A LEU 64 n 64 LEU 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A MET 67 n 67 MET 67 A MET 68 n 68 MET 68 A LEU 69 n 69 LEU 69 A PRO 70 n 70 PRO 70 A ARG 71 n 71 ARG 71 A SER 72 n 72 SER 72 A GLY 73 n 73 GLY 73 A LEU 74 n 74 LEU 74 A GLY 75 n 75 GLY 75 A HIS 76 n 76 HIS 76 A LYS 77 n 77 LYS 77 A HIS 78 n 78 HIS 78 A GLY 79 n 79 GLY 79 A ILE 80 n 80 ILE 80 A VAL 81 n 81 VAL 81 A LEU 82 n 82 LEU 82 A GLY 83 n 83 GLY 83 A ASN 84 n 84 ASN 84 A LEU 85 n 85 LEU 85 A VAL 86 n 86 VAL 86 A GLY 87 n 87 GLY 87 A LEU 88 n 88 LEU 88 A ILE 89 n 89 ILE 89 A ASP 90 n 90 ASP 90 A SER 91 n 91 SER 91 A ASP 92 n 92 ASP 92 A TYR 93 n 93 TYR 93 A GLN 94 n 94 GLN 94 A GLY 95 n 95 GLY 95 A GLN 96 n 96 GLN 96 A LEU 97 n 97 LEU 97 A MET 98 n 98 MET 98 A ILE 99 n 99 ILE 99 A SER 100 n 100 SER 100 A VAL 101 n 101 VAL 101 A TRP 102 n 102 TRP 102 A ASN 103 n 103 ASN 103 A ARG 104 n 104 ARG 104 A GLY 105 n 105 GLY 105 A GLN 106 n 106 GLN 106 A ASP 107 n 107 ASP 107 A SER 108 n 108 SER 108 A PHE 109 n 109 PHE 109 A THR 110 n 110 THR 110 A ILE 111 n 111 ILE 111 A GLN 112 n 112 GLN 112 A PRO 113 n 113 PRO 113 A GLY 114 n 114 GLY 114 A GLU 115 n 115 GLU 115 A ARG 116 n 116 ARG 116 A ILE 117 n 117 ILE 117 A ALA 118 n 118 ALA 118 A GLN 119 n 119 GLN 119 A MET 120 n 120 MET 120 A ILE 121 n 121 ILE 121 A PHE 122 n 122 PHE 122 A VAL 123 n 123 VAL 123 A PRO 124 n 124 PRO 124 A VAL 125 n 125 VAL 125 A VAL 126 n 126 VAL 126 A GLN 127 n 127 GLN 127 A ALA 128 n 128 ALA 128 A GLU 129 n 129 GLU 129 A PHE 130 n 130 PHE 130 A ASN 131 n 131 ASN 131 A LEU 132 n 132 LEU 132 A VAL 133 n 133 VAL 133 A GLU 134 n 134 GLU 134 A ASP 135 n 135 ASP 135 A PHE 136 n 136 PHE 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A author_and_software_defined_assembly PISA,PQS 3 trimeric 9890 -73 16440 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 43.3050000000 75.0064602218 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -43.3050000000 75.0064602218 0.0000000000 A O ASP 6 A O ASP 6 A N HIS 58 A N HIS 58 A O VAL 51 A O VAL 51 A N MET 98 A N MET 98 A O SER 100 A O SER 100 A N GLY 83 A N GLY 83 A O LEU 31 A O LEU 31 A N MET 120 A N MET 120 A O VAL 123 A O VAL 123 A N ALA 65 A N ALA 65 A O MET 68 A O MET 68 A N GLY 87 A N GLY 87 A O LEU 43 A O LEU 43 A N PHE 109 A N PHE 109 1 A HOH 188 B HOH 1 A HOH 231 B HOH 1 A CE LYS 3 A CE LYS 3 0 Y 1 A NZ LYS 3 A NZ LYS 3 0 Y 1 A CD LYS 4 A CD LYS 4 0 Y 1 A CE LYS 4 A CE LYS 4 0 Y 1 A NZ LYS 4 A NZ LYS 4 0 Y 1 A CE LYS 16 A CE LYS 16 0 Y 1 A NZ LYS 16 A NZ LYS 16 0 Y 1 A CE LYS 77 A CE LYS 77 0 Y 1 A NZ LYS 77 A NZ LYS 77 0 Y 1 A CG GLN 106 A CG GLN 106 0 Y 1 A CD GLN 106 A CD GLN 106 0 Y 1 A OE1 GLN 106 A OE1 GLN 106 0 Y 1 A NE2 GLN 106 A NE2 GLN 106 0 Y 1 A CD GLU 129 A CD GLU 129 0 Y 1 A OE1 GLU 129 A OE1 GLU 129 0 Y 1 A OE2 GLU 129 A OE2 GLU 129 0 Y 1 A ASP 137 A ASP 137 1 Y 1 A ALA 138 A ALA 138 1 Y 1 A THR 139 A THR 139 1 Y 1 A ASP 140 A ASP 140 1 Y 1 A ARG 141 A ARG 141 1 Y 1 A GLY 142 A GLY 142 1 Y 1 A GLU 143 A GLU 143 1 Y 1 A GLY 144 A GLY 144 1 Y 1 A GLY 145 A GLY 145 1 Y 1 A PHE 146 A PHE 146 1 Y 1 A GLY 147 A GLY 147 1 Y 1 A HIS 148 A HIS 148 1 Y 1 A SER 149 A SER 149 1 Y 1 A GLY 150 A GLY 150 1 Y 1 A ARG 151 A ARG 151 1 Y 1 A GLN 152 A GLN 152 1 Y 1 22.21 1.60 100.20 122.41 A A A CG SD CE MET MET MET 1 1 1 N 1 -14.52 2.20 117.20 102.68 A A A CA C N MET MET LYS 2 2 3 Y 1 12.07 1.60 122.70 134.77 A A A O C N MET MET LYS 2 2 3 Y 1 21.57 2.60 111.60 133.17 A A A CB CG CD LYS LYS LYS 4 4 4 N 1 10.79 1.20 123.30 134.09 A A A OE1 CD OE2 GLU GLU GLU 17 17 17 N 1 -7.99 0.50 120.30 112.31 A A A NE CZ NH2 ARG ARG ARG 34 34 34 N 1 5.45 0.50 120.30 125.75 A A A NE CZ NH1 ARG ARG ARG 71 71 71 N 1 -8.17 0.50 120.30 112.13 A A A NE CZ NH2 ARG ARG ARG 71 71 71 N 1 -9.75 1.50 110.50 100.75 A A A N CA CB SER SER SER 72 72 72 N 1 5.82 0.90 118.30 124.12 A A A CB CG OD1 ASP ASP ASP 90 90 90 N 1 25.42 2.60 111.60 137.02 A A A CB CG CD GLN GLN GLN 106 106 106 N 1 3.36 0.50 120.30 123.66 A A A NE CZ NH2 ARG ARG ARG 116 116 116 N 1 -20.51 2.70 114.20 93.69 A A A CB CG CD GLU GLU GLU 129 129 129 N 1 A A CG CD LYS LYS 4 4 -0.387 0.034 1.520 1.133 N 1 A A CD CE LYS LYS 77 77 -0.206 0.025 1.508 1.302 N 1 A A CG CD GLN GLN 106 106 -0.225 0.023 1.506 1.281 N 1 A A CG CD GLU GLU 129 129 0.225 0.015 1.515 1.740 N 1 A LYS 16 -107.00 -70.69 1 A ALA 60 69.07 -38.40 1 A LEU 85 70.90 -60.79 0.1500000 1.9 10.0 13597 98.9 1 0.0 1.9 10.0 123 1150 0 0 1027 0.017 0.020 0.044 0.040 0.047 0.050 2.4 2.0 3.4 3.0 5.6 4.0 7.8 5.0 0.015 0.020 0.180 0.150 0.186 0.300 0.263 0.300 0.194 0.300 2.8 3.0 15.6 15.0 31.7 20.0 model building ARP/wARP refinement PROLSQ DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE (D-UTPASE) 1 N N 2 N N THE STRUCTURE IS BUILT-UP OF TIGHT TRIMERS AROUND THE CRYSTALLOGRAPHIC THREE-FOLD AXIS. MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. APPLIED TO TRANSFORMED TO MTRIX RESIDUES RESIDUES RMSD M1 A 1 .. A 136 1 .. 136 M2 A 1 .. A 136 1 .. 136 THESE TRANSFORMATIONS WILL YIELD THE COORDINATES FOR THE TWO OTHER SUBUNITS OF THE TRIMER. A SER 72 A SER 72 HELX_P A HIS 78 A HIS 78 1 H1 7 HYDROLASE HYDROLASE, NUCLEOTIDE METABOLISM DUT_ECOLI UNP 1 1 P06968 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIV LGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ 1 151 1DUP 2 152 P06968 A 1 2 152 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 3 A LYS 3 A LEU 10 A LEU 10 A ASP 47 A ASP 47 A HIS 58 A HIS 58 A LEU 97 A LEU 97 A ARG 104 A ARG 104 A GLY 79 A GLY 79 A GLY 83 A GLY 83 A LEU 31 A LEU 31 A ALA 35 A ALA 35 A GLY 114 A GLY 114 A VAL 125 A VAL 125 A SER 63 A SER 63 A LEU 69 A LEU 69 A GLY 87 A GLY 87 A ILE 89 A ILE 89 A VAL 41 A VAL 41 A LEU 43 A LEU 43 A PHE 109 A PHE 109 A ILE 111 A ILE 111 146 H 3