0.041679
0.009506
0.004366
0.000000
0.019019
0.008933
0.000000
0.000000
0.017068
0.00000
0.00000
0.00000
Hung, L.-W.
Holbrook, E.L.
Holbrook, S.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
114.52
89.88
102.85
23.993
53.930
64.729
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
NA
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
O
N
123
S
C
N
124
N
O
N
125
R
C
N
126
N
O
N
127
R
C
N
128
N
N
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
5107
5112
10.1073/pnas.090588197
10792052
The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability.
2000
10.2210/pdb1duq/pdb
pdb_00001duq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-08-26
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.100
1.0
5.0.2
ALS
1.100
SYNCHROTRON
ALS BEAMLINE 5.0.2
3922.400
THE REV BINDING ELEMENT
SHORT CHAIN
4
syn
polymer
4461.723
THE REV BINDING ELEMENT
LONG CHAIN
4
syn
polymer
22.990
SODIUM ION
10
syn
non-polymer
18.015
water
83
nat
water
no
no
GCUGGGCGCAGG
GCUGGGCGCAGG
A,C,E,G
polyribonucleotide
no
no
CCUGACGGUACAGC
CCUGACGGUACAGC
B,D,F,H
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.20
44.19
VAPOR DIFFUSION, HANGING DROP
6.5
0.1M SODIUM CACODYLATE, PH 6.5, 0.2 M NACL, 35% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
SODIUM CACODYLATE
1
NACL
1
MPD
1
MPD
2
-1.059
1
19
A
101
B
130
2.933
A_G101:C130_B
1
-10.458
-0.221
0.277
-0.222
-1.324
1
19
A
102
B
129
-0.987
A_C102:G129_B
2
-12.377
0.111
0.119
-0.274
3.166
1
20
A
103
B
128
0.044
A_U103:A128_B
3
-5.304
-0.115
0.006
-0.293
-6.510
1
19
A
104
B
127
3.357
A_G104:C127_B
4
-20.306
-0.178
-0.022
-0.089
-19.116
8
A
105
B
126
-17.594
A_G105:A126_B
5
-5.517
-0.190
-0.089
1.530
-18.178
6
A
106
B
124
-83.202
A_G106:G124_B
6
-6.545
1.649
0.294
3.677
7.549
1
19
A
107
B
123
0.697
A_C107:G123_B
7
-13.417
0.477
-0.125
-0.327
-2.004
1
19
A
108
B
122
1.140
A_G108:C122_B
8
-10.363
0.014
0.060
-0.129
-1.259
1
19
A
109
B
120
1.500
A_C109:G120_B
9
-10.005
0.260
0.261
-0.186
3.778
1
20
A
110
B
119
3.097
A_A110:U119_B
10
-10.686
-0.172
0.445
-0.202
-2.001
1
19
A
111
B
118
-3.652
A_G111:C118_B
11
-10.401
-0.108
0.155
-0.262
-15.728
1
19
A
112
B
117
-0.667
A_G112:C117_B
12
-17.029
0.071
-0.490
-0.236
-4.713
1
19
C
202
D
229
13.332
C_C202:G229_D
13
-18.073
1.253
0.135
-0.481
-10.131
1
20
C
203
D
228
7.946
C_U203:A228_D
14
-7.682
0.297
0.548
-0.236
5.354
1
19
C
204
D
227
1.456
C_G204:C227_D
15
-11.238
0.137
0.217
-0.155
-9.872
6
C
206
D
224
-86.089
C_G206:G224_D
16
-7.413
1.626
0.398
3.441
6.208
1
19
C
207
D
223
3.627
C_C207:G223_D
17
-16.517
0.694
0.341
-0.227
-1.136
1
19
C
208
D
222
4.140
C_G208:C222_D
18
-13.418
0.118
0.159
-0.235
-10.043
1
19
C
209
D
220
2.581
C_C209:G220_D
19
-5.720
0.332
0.748
-0.264
-1.127
1
20
C
210
D
219
3.638
C_A210:U219_D
20
-13.265
0.459
0.230
-0.107
1.763
1
19
C
211
D
218
4.449
C_G211:C218_D
21
-19.602
-0.504
0.271
-0.089
-9.876
1
19
C
212
D
217
0.697
C_G212:C217_D
22
-17.935
-0.116
-0.006
-0.362
-0.551
1
19
E
301
F
330
3.194
E_G301:C330_F
23
-10.151
-0.278
0.243
-0.229
-3.331
1
19
E
302
F
329
-1.979
E_C302:G329_F
24
-12.105
-0.041
0.305
-0.278
2.569
1
20
E
303
F
328
0.625
E_U303:A328_F
25
-5.232
-0.003
-0.035
-0.298
-6.491
1
19
E
304
F
327
2.739
E_G304:C327_F
26
-23.002
-0.133
-0.050
-0.100
-21.157
8
E
305
F
326
-17.298
E_G305:A326_F
27
-5.589
-0.134
-0.090
1.585
-17.318
6
E
306
F
324
-83.709
E_G306:G324_F
28
-6.429
1.596
0.228
3.715
7.505
1
19
E
307
F
323
-0.965
E_C307:G323_F
29
-11.899
0.408
-0.185
-0.325
-1.883
1
19
E
308
F
322
1.868
E_G308:C322_F
30
-10.691
-0.075
-0.062
-0.108
-0.890
1
19
E
309
F
320
2.556
E_C309:G320_F
31
-11.268
0.275
0.363
-0.148
4.136
1
20
E
310
F
319
3.255
E_A310:U319_F
32
-11.097
-0.059
0.453
-0.208
-2.889
1
19
E
311
F
318
-3.895
E_G311:C318_F
33
-10.604
-0.070
0.217
-0.238
-16.981
1
19
E
312
F
317
-0.536
E_G312:C317_F
34
-17.440
0.036
-0.527
-0.233
-2.615
1
22
G
402
H
429
12.081
G_C402:G429_H
35
-16.952
0.466
0.096
-0.408
-11.731
1
20
G
403
H
428
4.648
G_U403:A428_H
36
-11.926
0.003
0.521
-0.254
-1.080
1
19
G
404
H
427
6.751
G_G404:C427_H
37
-12.520
-0.036
0.116
-0.107
-8.081
6
G
406
H
424
-88.584
G_G406:G424_H
38
-9.359
1.439
0.500
3.328
7.860
1
19
G
407
H
423
2.162
G_C407:G423_H
39
-17.961
0.348
0.066
-0.278
-1.487
1
19
G
408
H
422
5.167
G_G408:C422_H
40
-13.243
-0.158
0.056
-0.163
-6.501
1
19
G
409
H
420
3.164
G_C409:G420_H
41
-7.512
0.264
0.254
-0.233
2.070
1
20
G
410
H
419
1.913
G_A410:U419_H
42
-10.351
0.693
0.339
-0.124
-2.696
1
19
G
411
H
418
1.786
G_G411:C418_H
43
-16.748
-0.318
0.106
-0.272
-9.022
1
19
G
412
H
417
2.850
G_G412:C417_H
44
-16.352
-0.301
-0.043
-0.210
3.025
38.078
A
A
101
102
5.202
B
B
130
129
3.166
3.389
-0.525
-1.620
AA_G101C102:G129C130_BB
1
-0.709
1.088
37.926
-2.891
0.720
2.952
26.940
A
A
102
103
8.238
B
B
129
128
3.184
3.825
-0.263
-1.452
AA_C102U103:A128G129_BB
2
-0.120
0.259
26.672
-4.040
0.536
2.727
34.319
A
A
103
104
19.786
B
B
128
127
3.339
11.447
1.074
-1.583
AA_U103G104:C127A128_BB
3
3.200
-5.532
32.253
-4.402
-1.339
2.798
36.333
A
A
104
105
11.032
B
B
127
126
3.314
6.841
-1.256
-2.560
AA_G104G105:A126C127_BB
4
-0.189
0.306
35.704
-5.006
1.990
2.484
72.362
A
A
105
106
9.902
B
B
126
124
2.892
11.647
0.966
-3.085
AA_G105G106:G124A126_BB
5
4.845
-4.120
71.402
-2.933
-0.686
2.415
-16.924
A
A
106
107
-22.435
B
B
124
123
3.099
6.434
-0.632
1.294
AA_G106C107:G123G124_BB
6
1.146
3.996
-15.620
-8.075
-1.491
2.057
31.383
A
A
107
108
29.224
B
B
123
122
3.319
15.175
0.281
-1.819
AA_C107G108:C122G123_BB
7
-0.314
0.604
27.550
-5.869
-0.571
2.928
39.715
A
A
108
109
7.115
B
B
122
120
3.116
4.823
0.787
-1.421
AA_G108C109:G120C122_BB
8
-0.037
0.055
39.433
-2.612
-1.162
2.305
30.108
A
A
109
110
15.953
B
B
120
119
2.909
8.174
-0.044
-1.847
AA_C109A110:U119G120_BB
9
-2.920
5.698
28.858
-4.916
-0.401
3.066
31.468
A
A
110
111
6.158
B
B
119
118
3.304
3.333
0.037
-2.124
AA_A110G111:C118U119_BB
10
1.483
-2.739
31.261
-4.525
0.202
3.052
37.692
A
A
111
112
15.943
B
B
118
117
3.618
10.141
-0.118
-1.464
AA_G111G112:C117C118_BB
11
5.902
-9.279
35.883
-3.641
0.983
4.651
34.576
A
C
112
202
25.044
B
D
117
229
6.281
14.452
-0.599
-2.698
AC_G112C202:G229C117_DB
12
-1.017
1.763
31.479
-8.457
0.732
3.001
28.485
C
C
202
203
15.468
D
D
229
228
3.294
7.502
-0.100
-0.638
CC_C202U203:A228G229_DD
13
-3.804
7.842
27.239
-2.985
-0.652
2.510
26.199
C
C
203
204
13.558
D
D
228
227
2.775
6.078
0.639
-1.077
CC_U203G204:C227A228_DD
14
3.053
-6.811
25.316
-3.729
-0.731
5.334
116.535
C
C
204
206
8.789
D
D
227
224
5.738
14.932
0.121
-4.762
CC_G204G206:G224C227_DD
15
4.823
-2.839
115.864
-3.064
0.014
2.171
-14.045
C
C
206
207
-30.431
D
D
224
223
3.172
7.088
-0.453
1.189
CC_G206C207:G223G224_DD
16
1.386
5.950
-12.054
-10.771
-0.698
2.470
29.960
C
C
207
208
16.256
D
D
223
222
3.191
8.298
0.553
-2.251
CC_C207G208:C222G223_DD
17
0.516
-1.011
28.808
-5.868
-0.976
3.199
43.895
C
C
208
209
2.008
D
D
222
220
3.336
1.499
0.744
-1.620
CC_G208C209:G220C222_DD
18
-4.251
5.696
43.675
-2.309
-1.399
2.306
34.189
C
C
209
210
15.762
D
D
220
219
2.784
9.139
-0.239
-1.293
CC_C209A210:U219G220_DD
19
3.961
-6.830
32.747
-3.348
0.905
2.775
28.939
C
C
210
211
11.001
D
D
219
218
3.072
5.465
0.298
-1.351
CC_A210G211:C218U219_DD
20
0.731
-1.471
28.419
-3.795
-0.451
3.017
37.313
C
C
211
212
15.677
D
D
218
217
3.493
9.897
0.341
-1.460
CC_G211G212:C217C218_DD
21
4.261
-6.749
35.776
-3.614
0.040
2.994
38.128
E
E
301
302
7.961
F
F
330
329
3.207
5.181
-0.593
-1.674
EE_G301C302:G329C330_FF
22
-2.856
4.388
37.683
-3.187
0.563
3.029
28.134
E
E
302
303
3.685
F
F
329
328
3.138
1.790
-0.259
-1.439
EE_C302U303:A328G329_FF
23
1.164
-2.396
28.054
-3.356
0.790
2.667
34.171
E
E
303
304
20.626
F
F
328
327
3.326
11.866
1.020
-1.590
EE_U303G304:C327A328_FF
24
3.004
-5.222
31.965
-4.486
-1.285
2.811
36.424
E
E
304
305
11.836
F
F
327
326
3.357
7.351
-1.276
-2.539
EE_G304G305:A326C327_FF
25
-0.414
0.667
35.696
-5.034
1.987
2.471
71.757
E
E
305
306
9.161
F
F
326
324
2.854
10.704
0.945
-3.100
EE_G305G306:G324A326_FF
26
4.097
-3.507
70.958
-2.940
-0.693
2.432
-17.479
E
E
306
307
-22.708
F
F
324
323
3.102
6.715
-0.660
1.265
EE_G306C307:G323G324_FF
27
1.659
5.611
-16.062
-7.785
-1.277
2.057
31.329
E
E
307
308
30.151
F
F
323
322
3.327
15.588
0.338
-1.744
EE_C307G308:C322G323_FF
28
0.516
-0.999
27.255
-5.828
-0.540
2.920
40.378
E
E
308
309
6.194
F
F
322
320
3.106
4.267
0.832
-1.398
EE_G308C309:G320C322_FF
29
-1.389
2.016
40.138
-2.469
-1.349
2.231
30.806
E
E
309
310
17.125
F
F
320
319
2.877
8.965
-0.089
-1.850
EE_C309A310:U319G320_FF
30
-1.984
3.790
29.437
-4.881
-0.143
3.090
30.736
E
E
310
311
6.536
F
F
319
318
3.346
3.457
0.002
-2.133
EE_A310G311:C318U319_FF
31
0.737
-1.394
30.537
-4.693
0.138
2.988
37.770
E
E
311
312
16.719
F
F
318
317
3.592
10.640
-0.140
-1.470
EE_G311G312:C317C318_FF
32
6.131
-9.635
35.787
-3.692
1.034
4.674
29.647
E
G
312
402
23.945
F
H
317
429
6.142
11.913
-0.306
-2.478
EG_G312C402:G429C317_HF
33
-1.797
3.612
27.139
-9.190
-0.059
3.226
30.242
G
G
402
403
15.582
H
H
429
428
3.507
8.020
-0.298
-0.664
GG_C402U403:A428G429_HH
34
-3.354
6.516
28.993
-2.983
-0.143
2.489
28.600
G
G
403
404
18.283
H
H
428
427
2.823
8.862
1.042
-1.022
GG_U403G404:C427A428_HH
35
3.786
-7.810
26.959
-3.751
-1.390
5.281
117.222
G
G
404
406
8.810
H
H
427
424
5.659
15.024
0.085
-4.480
GG_G404G406:G424C427_HH
36
1.835
-1.076
116.607
-2.882
-0.018
2.107
-16.089
G
G
406
407
-29.790
H
H
424
423
3.026
7.834
-0.540
1.113
GG_G406C407:G423G424_HH
37
4.892
18.603
-13.188
-8.860
1.119
2.696
29.764
G
G
407
408
15.492
H
H
423
422
3.382
7.863
0.649
-2.057
GG_C407G408:C422G423_HH
38
-1.617
3.185
28.684
-5.563
-1.584
3.185
44.938
G
G
408
409
3.095
H
H
422
420
3.304
2.364
0.694
-1.454
GG_G408C409:G420C422_HH
39
-2.571
3.366
44.810
-2.115
-1.139
2.280
35.559
G
G
409
410
18.433
H
H
420
419
2.821
11.081
-0.415
-1.334
GG_C409A410:U419G420_HH
40
0.454
-0.756
33.839
-3.479
0.732
3.087
28.003
G
G
410
411
9.827
H
H
419
418
3.362
4.729
0.192
-1.409
GG_A410G411:C418U419_HH
41
2.067
-4.295
27.532
-4.025
0.090
2.845
35.609
G
G
411
412
15.358
H
H
418
417
3.291
9.268
0.597
-1.532
GG_G411G412:C417C418_HH
42
4.332
-7.179
34.154
-3.797
-0.372
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-05-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-01-18
REL
NA
SODIUM ION
HOH
water
SEQUENCE FROM HIV-1. SYNTHESIZED BY OLIGOS, ETC.
sample
NA
911
3
NA
NA
911
B
NA
904
3
NA
NA
904
C
NA
906
3
NA
NA
906
C
NA
913
3
NA
NA
913
C
NA
901
3
NA
NA
901
D
NA
912
3
NA
NA
912
E
NA
905
3
NA
NA
905
G
NA
914
3
NA
NA
914
G
NA
902
3
NA
NA
902
H
NA
903
3
NA
NA
903
H
HOH
506
4
HOH
HOH
506
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
516
4
HOH
HOH
516
A
HOH
538
4
HOH
HOH
538
A
HOH
541
4
HOH
HOH
541
A
HOH
548
4
HOH
HOH
548
A
HOH
603
4
HOH
HOH
603
A
HOH
605
4
HOH
HOH
605
A
HOH
611
4
HOH
HOH
611
A
HOH
619
4
HOH
HOH
619
A
HOH
502
4
HOH
HOH
502
B
HOH
503
4
HOH
HOH
503
B
HOH
505
4
HOH
HOH
505
B
HOH
510
4
HOH
HOH
510
B
HOH
520
4
HOH
HOH
520
B
HOH
522
4
HOH
HOH
522
B
HOH
525
4
HOH
HOH
525
B
HOH
526
4
HOH
HOH
526
B
HOH
530
4
HOH
HOH
530
B
HOH
531
4
HOH
HOH
531
B
HOH
533
4
HOH
HOH
533
B
HOH
535
4
HOH
HOH
535
B
HOH
543
4
HOH
HOH
543
B
HOH
546
4
HOH
HOH
546
B
HOH
606
4
HOH
HOH
606
B
HOH
617
4
HOH
HOH
617
B
HOH
624
4
HOH
HOH
624
B
HOH
625
4
HOH
HOH
625
B
HOH
528
4
HOH
HOH
528
C
HOH
532
4
HOH
HOH
532
C
HOH
540
4
HOH
HOH
540
C
HOH
631
4
HOH
HOH
631
C
HOH
633
4
HOH
HOH
633
C
HOH
637
4
HOH
HOH
637
C
HOH
514
4
HOH
HOH
514
D
HOH
517
4
HOH
HOH
517
D
HOH
523
4
HOH
HOH
523
D
HOH
542
4
HOH
HOH
542
D
HOH
547
4
HOH
HOH
547
D
HOH
601
4
HOH
HOH
601
D
HOH
612
4
HOH
HOH
612
D
HOH
616
4
HOH
HOH
616
D
HOH
620
4
HOH
HOH
620
D
HOH
623
4
HOH
HOH
623
D
HOH
628
4
HOH
HOH
628
D
HOH
507
4
HOH
HOH
507
E
HOH
518
4
HOH
HOH
518
E
HOH
521
4
HOH
HOH
521
E
HOH
545
4
HOH
HOH
545
E
HOH
607
4
HOH
HOH
607
E
HOH
610
4
HOH
HOH
610
E
HOH
613
4
HOH
HOH
613
E
HOH
504
4
HOH
HOH
504
F
HOH
511
4
HOH
HOH
511
F
HOH
524
4
HOH
HOH
524
F
HOH
527
4
HOH
HOH
527
F
HOH
529
4
HOH
HOH
529
F
HOH
536
4
HOH
HOH
536
F
HOH
537
4
HOH
HOH
537
F
HOH
539
4
HOH
HOH
539
F
HOH
544
4
HOH
HOH
544
F
HOH
614
4
HOH
HOH
614
F
HOH
621
4
HOH
HOH
621
F
HOH
626
4
HOH
HOH
626
F
HOH
630
4
HOH
HOH
630
F
HOH
512
4
HOH
HOH
512
G
HOH
519
4
HOH
HOH
519
G
HOH
608
4
HOH
HOH
608
G
HOH
618
4
HOH
HOH
618
G
HOH
622
4
HOH
HOH
622
G
HOH
627
4
HOH
HOH
627
G
HOH
632
4
HOH
HOH
632
G
HOH
635
4
HOH
HOH
635
G
HOH
636
4
HOH
HOH
636
G
HOH
513
4
HOH
HOH
513
H
HOH
515
4
HOH
HOH
515
H
HOH
534
4
HOH
HOH
534
H
HOH
602
4
HOH
HOH
602
H
HOH
604
4
HOH
HOH
604
H
HOH
609
4
HOH
HOH
609
H
HOH
615
4
HOH
HOH
615
H
HOH
629
4
HOH
HOH
629
H
G
101
n
1
G
101
A
C
102
n
2
C
102
A
U
103
n
3
U
103
A
G
104
n
4
G
104
A
G
105
n
5
G
105
A
G
106
n
6
G
106
A
C
107
n
7
C
107
A
G
108
n
8
G
108
A
C
109
n
9
C
109
A
A
110
n
10
A
110
A
G
111
n
11
G
111
A
G
112
n
12
G
112
A
C
117
n
1
C
117
B
C
118
n
2
C
118
B
U
119
n
3
U
119
B
G
120
n
4
G
120
B
A
121
n
5
A
121
B
C
122
n
6
C
122
B
G
123
n
7
G
123
B
G
124
n
8
G
124
B
U
125
n
9
U
125
B
A
126
n
10
A
126
B
C
127
n
11
C
127
B
A
128
n
12
A
128
B
G
129
n
13
G
129
B
C
130
n
14
C
130
B
G
201
n
1
G
201
C
C
202
n
2
C
202
C
U
203
n
3
U
203
C
G
204
n
4
G
204
C
G
205
n
5
G
205
C
G
206
n
6
G
206
C
C
207
n
7
C
207
C
G
208
n
8
G
208
C
C
209
n
9
C
209
C
A
210
n
10
A
210
C
G
211
n
11
G
211
C
G
212
n
12
G
212
C
C
217
n
1
C
217
D
C
218
n
2
C
218
D
U
219
n
3
U
219
D
G
220
n
4
G
220
D
A
221
n
5
A
221
D
C
222
n
6
C
222
D
G
223
n
7
G
223
D
G
224
n
8
G
224
D
U
225
n
9
U
225
D
A
226
n
10
A
226
D
C
227
n
11
C
227
D
A
228
n
12
A
228
D
G
229
n
13
G
229
D
C
230
n
14
C
230
D
G
301
n
1
G
301
E
C
302
n
2
C
302
E
U
303
n
3
U
303
E
G
304
n
4
G
304
E
G
305
n
5
G
305
E
G
306
n
6
G
306
E
C
307
n
7
C
307
E
G
308
n
8
G
308
E
C
309
n
9
C
309
E
A
310
n
10
A
310
E
G
311
n
11
G
311
E
G
312
n
12
G
312
E
C
317
n
1
C
317
F
C
318
n
2
C
318
F
U
319
n
3
U
319
F
G
320
n
4
G
320
F
A
321
n
5
A
321
F
C
322
n
6
C
322
F
G
323
n
7
G
323
F
G
324
n
8
G
324
F
U
325
n
9
U
325
F
A
326
n
10
A
326
F
C
327
n
11
C
327
F
A
328
n
12
A
328
F
G
329
n
13
G
329
F
C
330
n
14
C
330
F
G
401
n
1
G
401
G
C
402
n
2
C
402
G
U
403
n
3
U
403
G
G
404
n
4
G
404
G
G
405
n
5
G
405
G
G
406
n
6
G
406
G
C
407
n
7
C
407
G
G
408
n
8
G
408
G
C
409
n
9
C
409
G
A
410
n
10
A
410
G
G
411
n
11
G
411
G
G
412
n
12
G
412
G
C
417
n
1
C
417
H
C
418
n
2
C
418
H
U
419
n
3
U
419
H
G
420
n
4
G
420
H
A
421
n
5
A
421
H
C
422
n
6
C
422
H
G
423
n
7
G
423
H
G
424
n
8
G
424
H
U
425
n
9
U
425
H
A
426
n
10
A
426
H
C
427
n
11
C
427
H
A
428
n
12
A
428
H
G
429
n
13
G
429
H
C
430
n
14
C
430
H
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
G
106
A
O6
G
6
1_555
B
NA
911
I
NA
NA
1_555
A
HOH
603
S
O
HOH
1_555
86.0
A
G
106
A
O6
G
6
1_555
B
NA
911
I
NA
NA
1_555
B
G
123
B
O6
G
7
1_555
82.6
A
HOH
603
S
O
HOH
1_555
B
NA
911
I
NA
NA
1_555
B
G
123
B
O6
G
7
1_555
83.7
A
G
106
A
O6
G
6
1_555
B
NA
911
I
NA
NA
1_555
B
G
124
B
O6
G
8
1_555
90.0
A
HOH
603
S
O
HOH
1_555
B
NA
911
I
NA
NA
1_555
B
G
124
B
O6
G
8
1_555
155.2
B
G
123
B
O6
G
7
1_555
B
NA
911
I
NA
NA
1_555
B
G
124
B
O6
G
8
1_555
71.5
C
G
201
C
O5'
G
1
1_555
C
NA
906
K
NA
NA
1_555
C
G
201
C
O3'
G
1
1_555
81.5
C
G
201
C
O5'
G
1
1_555
C
NA
906
K
NA
NA
1_555
C
C
202
C
OP2
C
2
1_555
70.4
C
G
201
C
O3'
G
1
1_555
C
NA
906
K
NA
NA
1_555
C
C
202
C
OP2
C
2
1_555
51.9
C
G
201
C
N1
G
1
1_555
C
NA
913
L
NA
NA
1_555
D
C
230
D
O2
C
14
1_555
141.9
C
G
206
C
O6
G
6
1_555
C
NA
904
J
NA
NA
1_555
C
HOH
631
U
O
HOH
1_555
71.6
C
G
206
C
O6
G
6
1_555
C
NA
904
J
NA
NA
1_555
D
G
223
D
O6
G
7
1_555
76.4
C
HOH
631
U
O
HOH
1_555
C
NA
904
J
NA
NA
1_555
D
G
223
D
O6
G
7
1_555
147.6
C
G
206
C
O6
G
6
1_555
C
NA
904
J
NA
NA
1_555
D
G
224
D
O6
G
8
1_555
96.2
C
HOH
631
U
O
HOH
1_555
C
NA
904
J
NA
NA
1_555
D
G
224
D
O6
G
8
1_555
116.8
D
G
223
D
O6
G
7
1_555
C
NA
904
J
NA
NA
1_555
D
G
224
D
O6
G
8
1_555
71.3
C
G
206
C
O6
G
6
1_555
C
NA
904
J
NA
NA
1_555
D
HOH
601
V
O
HOH
1_555
96.1
C
HOH
631
U
O
HOH
1_555
C
NA
904
J
NA
NA
1_555
D
HOH
601
V
O
HOH
1_555
113.7
D
G
223
D
O6
G
7
1_555
C
NA
904
J
NA
NA
1_555
D
HOH
601
V
O
HOH
1_555
64.3
D
G
224
D
O6
G
8
1_555
C
NA
904
J
NA
NA
1_555
D
HOH
601
V
O
HOH
1_555
129.4
D
G
220
D
O2'
G
4
1_555
D
NA
901
M
NA
NA
1_555
D
A
221
D
OP2
A
5
1_555
91.1
D
G
220
D
O2'
G
4
1_555
D
NA
901
M
NA
NA
1_555
D
A
221
D
O3'
A
5
1_555
104.3
D
A
221
D
OP2
A
5
1_555
D
NA
901
M
NA
NA
1_555
D
A
221
D
O3'
A
5
1_555
137.9
D
G
220
D
O2'
G
4
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
O5'
C
6
1_555
95.1
D
A
221
D
OP2
A
5
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
O5'
C
6
1_555
161.5
D
A
221
D
O3'
A
5
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
O5'
C
6
1_555
56.9
D
G
220
D
O2'
G
4
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
OP1
C
6
1_555
56.0
D
A
221
D
OP2
A
5
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
OP1
C
6
1_555
139.3
D
A
221
D
O3'
A
5
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
OP1
C
6
1_555
50.1
D
C
222
D
O5'
C
6
1_555
D
NA
901
M
NA
NA
1_555
D
C
222
D
OP1
C
6
1_555
56.5
E
G
306
E
O6
G
6
1_555
E
NA
912
N
NA
NA
1_555
F
G
324
F
O6
G
8
1_555
98.7
G
G
401
G
O5'
G
1
1_555
G
NA
905
O
NA
NA
1_555
G
G
401
G
O3'
G
1
1_555
76.3
G
G
401
G
O5'
G
1
1_555
G
NA
905
O
NA
NA
1_555
G
C
402
G
OP2
C
2
1_555
59.2
G
G
401
G
O3'
G
1
1_555
G
NA
905
O
NA
NA
1_555
G
C
402
G
OP2
C
2
1_555
51.0
G
G
401
G
N1
G
1
1_555
G
NA
914
P
NA
NA
1_555
H
C
430
H
O2
C
14
1_555
110.6
G
G
406
G
O6
G
6
1_555
H
NA
902
Q
NA
NA
1_555
G
HOH
635
Y
O
HOH
1_555
68.1
G
G
406
G
O6
G
6
1_555
H
NA
902
Q
NA
NA
1_555
H
G
423
H
O6
G
7
1_555
73.6
G
HOH
635
Y
O
HOH
1_555
H
NA
902
Q
NA
NA
1_555
H
G
423
H
O6
G
7
1_555
141.7
G
G
406
G
O6
G
6
1_555
H
NA
902
Q
NA
NA
1_555
H
G
424
H
O6
G
8
1_555
85.8
G
HOH
635
Y
O
HOH
1_555
H
NA
902
Q
NA
NA
1_555
H
G
424
H
O6
G
8
1_555
104.8
H
G
423
H
O6
G
7
1_555
H
NA
902
Q
NA
NA
1_555
H
G
424
H
O6
G
8
1_555
73.4
G
G
406
G
O6
G
6
1_555
H
NA
902
Q
NA
NA
1_555
H
HOH
602
Z
O
HOH
1_555
93.8
G
HOH
635
Y
O
HOH
1_555
H
NA
902
Q
NA
NA
1_555
H
HOH
602
Z
O
HOH
1_555
118.1
H
G
423
H
O6
G
7
1_555
H
NA
902
Q
NA
NA
1_555
H
HOH
602
Z
O
HOH
1_555
62.1
H
G
424
H
O6
G
8
1_555
H
NA
902
Q
NA
NA
1_555
H
HOH
602
Z
O
HOH
1_555
133.5
H
G
420
H
O2'
G
4
1_555
H
NA
903
R
NA
NA
1_555
H
A
421
H
OP2
A
5
1_555
103.5
H
G
420
H
O2'
G
4
1_555
H
NA
903
R
NA
NA
1_555
H
C
422
H
O5'
C
6
1_555
83.9
H
A
421
H
OP2
A
5
1_555
H
NA
903
R
NA
NA
1_555
H
C
422
H
O5'
C
6
1_555
157.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
G
H
O2
N2
C
G
402
429
2.14
1
B
G
124
0.061
SIDE CHAIN
1
F
G
324
0.063
SIDE CHAIN
1
D
H
O2'
O2'
G
G
229
429
2.12
1_555
1_445
1
C
G
O2'
O2'
C
C
202
402
2.12
1_555
1_445
PROTEIN_REP.PA
PROTEIN.TOP
DNA-RNA_REP.PA
DNA-RNA_REP.TOP
WATER_REP.PARA
WATER_REP.TOP
ION.PARAM
ION.TOP
41.1
8.52
0.39
-0.73
-3.54
2.74
-4.98
0.2690000
0.007
0.2180000
0.2210000
0.2180000
2.10
19.77
1431
15998
14136
10.1
84.6
RANDOM
659115.35
0.00
1
RESTRAINED
THROUGHOUT
2.0
1.0
ENGH & HUBER
FLAT MODEL
60.11
0.399
0.41
0.32
5.00
0.46
0.33
2.10
19.77
83
2313
10
2220
0
0.009
1.5
16.9
1.57
0.3850000
0.029
0.3010000
2.23
177
1581
6
10.1
62.9
25.6
2.1
20
1DUQ
16703
15998
2
1
0.3800000
1
8
1.8
94.7
0.2480000
2.10
2.17
1.5
83.2
phasing
SOLVE
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
metalc
2.460
A
G
106
A
O6
G
6
1_555
B
NA
911
I
NA
NA
1_555
metalc
2.521
A
HOH
603
S
O
HOH
1_555
B
NA
911
I
NA
NA
1_555
metalc
2.928
B
G
123
B
O6
G
7
1_555
B
NA
911
I
NA
NA
1_555
metalc
2.300
B
G
124
B
O6
G
8
1_555
B
NA
911
I
NA
NA
1_555
metalc
1.903
C
G
201
C
O5'
G
1
1_555
C
NA
906
K
NA
NA
1_555
metalc
2.953
C
G
201
C
O3'
G
1
1_555
C
NA
906
K
NA
NA
1_555
metalc
2.231
C
G
201
C
N1
G
1
1_555
C
NA
913
L
NA
NA
1_555
metalc
2.756
C
C
202
C
OP2
C
2
1_555
C
NA
906
K
NA
NA
1_555
metalc
2.276
C
G
206
C
O6
G
6
1_555
C
NA
904
J
NA
NA
1_555
metalc
2.791
C
HOH
631
U
O
HOH
1_555
C
NA
904
J
NA
NA
1_555
metalc
2.998
C
NA
904
J
NA
NA
1_555
D
G
223
D
O6
G
7
1_555
metalc
2.129
C
NA
904
J
NA
NA
1_555
D
G
224
D
O6
G
8
1_555
metalc
2.382
C
NA
904
J
NA
NA
1_555
D
HOH
601
V
O
HOH
1_555
metalc
2.750
C
NA
913
L
NA
NA
1_555
D
C
230
D
O2
C
14
1_555
metalc
2.796
D
G
220
D
O2'
G
4
1_555
D
NA
901
M
NA
NA
1_555
metalc
2.257
D
A
221
D
OP2
A
5
1_555
D
NA
901
M
NA
NA
1_555
metalc
2.907
D
A
221
D
O3'
A
5
1_555
D
NA
901
M
NA
NA
1_555
metalc
2.060
D
C
222
D
O5'
C
6
1_555
D
NA
901
M
NA
NA
1_555
metalc
2.944
D
C
222
D
OP1
C
6
1_555
D
NA
901
M
NA
NA
1_555
metalc
2.206
E
G
306
E
O6
G
6
1_555
E
NA
912
N
NA
NA
1_555
metalc
2.173
E
NA
912
N
NA
NA
1_555
F
G
324
F
O6
G
8
1_555
metalc
2.109
G
G
401
G
O5'
G
1
1_555
G
NA
905
O
NA
NA
1_555
metalc
2.826
G
G
401
G
O3'
G
1
1_555
G
NA
905
O
NA
NA
1_555
metalc
2.718
G
G
401
G
N1
G
1
1_555
G
NA
914
P
NA
NA
1_555
metalc
2.957
G
C
402
G
OP2
C
2
1_555
G
NA
905
O
NA
NA
1_555
metalc
2.318
G
G
406
G
O6
G
6
1_555
H
NA
902
Q
NA
NA
1_555
metalc
2.831
G
HOH
635
Y
O
HOH
1_555
H
NA
902
Q
NA
NA
1_555
metalc
2.719
G
NA
914
P
NA
NA
1_555
H
C
430
H
O2
C
14
1_555
metalc
2.857
H
G
420
H
O2'
G
4
1_555
H
NA
903
R
NA
NA
1_555
metalc
1.859
H
A
421
H
OP2
A
5
1_555
H
NA
903
R
NA
NA
1_555
metalc
2.821
H
C
422
H
O5'
C
6
1_555
H
NA
903
R
NA
NA
1_555
metalc
2.843
H
G
423
H
O6
G
7
1_555
H
NA
902
Q
NA
NA
1_555
metalc
2.169
H
G
424
H
O6
G
8
1_555
H
NA
902
Q
NA
NA
1_555
metalc
2.187
H
HOH
602
Z
O
HOH
1_555
H
NA
902
Q
NA
NA
1_555
hydrog
WATSON-CRICK
A
G
101
A
N1
G
1
1_555
B
C
130
B
N3
C
14
1_555
hydrog
WATSON-CRICK
A
G
101
A
N2
G
1
1_555
B
C
130
B
O2
C
14
1_555
hydrog
WATSON-CRICK
A
G
101
A
O6
G
1
1_555
B
C
130
B
N4
C
14
1_555
hydrog
WATSON-CRICK
A
C
102
A
N3
C
2
1_555
B
G
129
B
N1
G
13
1_555
hydrog
WATSON-CRICK
A
C
102
A
N4
C
2
1_555
B
G
129
B
O6
G
13
1_555
hydrog
WATSON-CRICK
A
C
102
A
O2
C
2
1_555
B
G
129
B
N2
G
13
1_555
hydrog
WATSON-CRICK
A
U
103
A
N3
U
3
1_555
B
A
128
B
N1
A
12
1_555
hydrog
WATSON-CRICK
A
U
103
A
O4
U
3
1_555
B
A
128
B
N6
A
12
1_555
hydrog
WATSON-CRICK
A
G
104
A
N1
G
4
1_555
B
C
127
B
N3
C
11
1_555
hydrog
WATSON-CRICK
A
G
104
A
N2
G
4
1_555
B
C
127
B
O2
C
11
1_555
hydrog
WATSON-CRICK
A
G
104
A
O6
G
4
1_555
B
C
127
B
N4
C
11
1_555
hydrog
TYPE_8_PAIR
A
G
105
A
N1
G
5
1_555
B
A
126
B
N1
A
10
1_555
hydrog
TYPE_8_PAIR
A
G
105
A
O6
G
5
1_555
B
A
126
B
N6
A
10
1_555
hydrog
TYPE_6_PAIR
A
G
106
A
N1
G
6
1_555
B
G
124
B
O6
G
8
1_555
hydrog
TYPE_6_PAIR
A
G
106
A
N2
G
6
1_555
B
G
124
B
N7
G
8
1_555
hydrog
WATSON-CRICK
A
C
107
A
N3
C
7
1_555
B
G
123
B
N1
G
7
1_555
hydrog
WATSON-CRICK
A
C
107
A
N4
C
7
1_555
B
G
123
B
O6
G
7
1_555
hydrog
WATSON-CRICK
A
C
107
A
O2
C
7
1_555
B
G
123
B
N2
G
7
1_555
hydrog
WATSON-CRICK
A
G
108
A
N1
G
8
1_555
B
C
122
B
N3
C
6
1_555
hydrog
WATSON-CRICK
A
G
108
A
N2
G
8
1_555
B
C
122
B
O2
C
6
1_555
hydrog
WATSON-CRICK
A
G
108
A
O6
G
8
1_555
B
C
122
B
N4
C
6
1_555
hydrog
WATSON-CRICK
A
C
109
A
N3
C
9
1_555
B
G
120
B
N1
G
4
1_555
hydrog
WATSON-CRICK
A
C
109
A
N4
C
9
1_555
B
G
120
B
O6
G
4
1_555
hydrog
WATSON-CRICK
A
C
109
A
O2
C
9
1_555
B
G
120
B
N2
G
4
1_555
hydrog
WATSON-CRICK
A
A
110
A
N1
A
10
1_555
B
U
119
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
A
110
A
N6
A
10
1_555
B
U
119
B
O4
U
3
1_555
hydrog
WATSON-CRICK
A
G
111
A
N1
G
11
1_555
B
C
118
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
111
A
N2
G
11
1_555
B
C
118
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
111
A
O6
G
11
1_555
B
C
118
B
N4
C
2
1_555
hydrog
WATSON-CRICK
A
G
112
A
N1
G
12
1_555
B
C
117
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
112
A
N2
G
12
1_555
B
C
117
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
112
A
O6
G
12
1_555
B
C
117
B
N4
C
1
1_555
hydrog
WATSON-CRICK
C
C
202
C
N3
C
2
1_555
D
G
229
D
N1
G
13
1_555
hydrog
WATSON-CRICK
C
C
202
C
N4
C
2
1_555
D
G
229
D
O6
G
13
1_555
hydrog
WATSON-CRICK
C
C
202
C
O2
C
2
1_555
D
G
229
D
N2
G
13
1_555
hydrog
WATSON-CRICK
C
U
203
C
N3
U
3
1_555
D
A
228
D
N1
A
12
1_555
hydrog
WATSON-CRICK
C
U
203
C
O4
U
3
1_555
D
A
228
D
N6
A
12
1_555
hydrog
WATSON-CRICK
C
G
204
C
N1
G
4
1_555
D
C
227
D
N3
C
11
1_555
hydrog
WATSON-CRICK
C
G
204
C
N2
G
4
1_555
D
C
227
D
O2
C
11
1_555
hydrog
WATSON-CRICK
C
G
204
C
O6
G
4
1_555
D
C
227
D
N4
C
11
1_555
hydrog
TYPE_6_PAIR
C
G
206
C
N1
G
6
1_555
D
G
224
D
O6
G
8
1_555
hydrog
TYPE_6_PAIR
C
G
206
C
N2
G
6
1_555
D
G
224
D
N7
G
8
1_555
hydrog
WATSON-CRICK
C
C
207
C
N3
C
7
1_555
D
G
223
D
N1
G
7
1_555
hydrog
WATSON-CRICK
C
C
207
C
N4
C
7
1_555
D
G
223
D
O6
G
7
1_555
hydrog
WATSON-CRICK
C
C
207
C
O2
C
7
1_555
D
G
223
D
N2
G
7
1_555
hydrog
WATSON-CRICK
C
G
208
C
N1
G
8
1_555
D
C
222
D
N3
C
6
1_555
hydrog
WATSON-CRICK
C
G
208
C
N2
G
8
1_555
D
C
222
D
O2
C
6
1_555
hydrog
WATSON-CRICK
C
G
208
C
O6
G
8
1_555
D
C
222
D
N4
C
6
1_555
hydrog
WATSON-CRICK
C
C
209
C
N3
C
9
1_555
D
G
220
D
N1
G
4
1_555
hydrog
WATSON-CRICK
C
C
209
C
N4
C
9
1_555
D
G
220
D
O6
G
4
1_555
hydrog
WATSON-CRICK
C
C
209
C
O2
C
9
1_555
D
G
220
D
N2
G
4
1_555
hydrog
WATSON-CRICK
C
A
210
C
N1
A
10
1_555
D
U
219
D
N3
U
3
1_555
hydrog
WATSON-CRICK
C
A
210
C
N6
A
10
1_555
D
U
219
D
O4
U
3
1_555
hydrog
WATSON-CRICK
C
G
211
C
N1
G
11
1_555
D
C
218
D
N3
C
2
1_555
hydrog
WATSON-CRICK
C
G
211
C
N2
G
11
1_555
D
C
218
D
O2
C
2
1_555
hydrog
WATSON-CRICK
C
G
211
C
O6
G
11
1_555
D
C
218
D
N4
C
2
1_555
hydrog
WATSON-CRICK
C
G
212
C
N1
G
12
1_555
D
C
217
D
N3
C
1
1_555
hydrog
WATSON-CRICK
C
G
212
C
N2
G
12
1_555
D
C
217
D
O2
C
1
1_555
hydrog
WATSON-CRICK
C
G
212
C
O6
G
12
1_555
D
C
217
D
N4
C
1
1_555
hydrog
U-G MISPAIR
D
U
225
D
O4
U
9
1_555
G
G
408
G
N2
G
8
1_555
hydrog
WATSON-CRICK
E
G
301
E
N1
G
1
1_555
F
C
330
F
N3
C
14
1_555
hydrog
WATSON-CRICK
E
G
301
E
N2
G
1
1_555
F
C
330
F
O2
C
14
1_555
hydrog
WATSON-CRICK
E
G
301
E
O6
G
1
1_555
F
C
330
F
N4
C
14
1_555
hydrog
WATSON-CRICK
E
C
302
E
N3
C
2
1_555
F
G
329
F
N1
G
13
1_555
hydrog
WATSON-CRICK
E
C
302
E
N4
C
2
1_555
F
G
329
F
O6
G
13
1_555
hydrog
WATSON-CRICK
E
C
302
E
O2
C
2
1_555
F
G
329
F
N2
G
13
1_555
hydrog
WATSON-CRICK
E
U
303
E
N3
U
3
1_555
F
A
328
F
N1
A
12
1_555
hydrog
WATSON-CRICK
E
U
303
E
O4
U
3
1_555
F
A
328
F
N6
A
12
1_555
hydrog
WATSON-CRICK
E
G
304
E
N1
G
4
1_555
F
C
327
F
N3
C
11
1_555
hydrog
WATSON-CRICK
E
G
304
E
N2
G
4
1_555
F
C
327
F
O2
C
11
1_555
hydrog
WATSON-CRICK
E
G
304
E
O6
G
4
1_555
F
C
327
F
N4
C
11
1_555
hydrog
TYPE_8_PAIR
E
G
305
E
N1
G
5
1_555
F
A
326
F
N1
A
10
1_555
hydrog
TYPE_8_PAIR
E
G
305
E
O6
G
5
1_555
F
A
326
F
N6
A
10
1_555
hydrog
TYPE_6_PAIR
E
G
306
E
N1
G
6
1_555
F
G
324
F
O6
G
8
1_555
hydrog
TYPE_6_PAIR
E
G
306
E
N2
G
6
1_555
F
G
324
F
N7
G
8
1_555
hydrog
WATSON-CRICK
E
C
307
E
N3
C
7
1_555
F
G
323
F
N1
G
7
1_555
hydrog
WATSON-CRICK
E
C
307
E
N4
C
7
1_555
F
G
323
F
O6
G
7
1_555
hydrog
WATSON-CRICK
E
C
307
E
O2
C
7
1_555
F
G
323
F
N2
G
7
1_555
hydrog
WATSON-CRICK
E
G
308
E
N1
G
8
1_555
F
C
322
F
N3
C
6
1_555
hydrog
WATSON-CRICK
E
G
308
E
N2
G
8
1_555
F
C
322
F
O2
C
6
1_555
hydrog
WATSON-CRICK
E
G
308
E
O6
G
8
1_555
F
C
322
F
N4
C
6
1_555
hydrog
WATSON-CRICK
E
C
309
E
N3
C
9
1_555
F
G
320
F
N1
G
4
1_555
hydrog
WATSON-CRICK
E
C
309
E
N4
C
9
1_555
F
G
320
F
O6
G
4
1_555
hydrog
WATSON-CRICK
E
C
309
E
O2
C
9
1_555
F
G
320
F
N2
G
4
1_555
hydrog
WATSON-CRICK
E
A
310
E
N1
A
10
1_555
F
U
319
F
N3
U
3
1_555
hydrog
WATSON-CRICK
E
A
310
E
N6
A
10
1_555
F
U
319
F
O4
U
3
1_555
hydrog
WATSON-CRICK
E
G
311
E
N1
G
11
1_555
F
C
318
F
N3
C
2
1_555
hydrog
WATSON-CRICK
E
G
311
E
N2
G
11
1_555
F
C
318
F
O2
C
2
1_555
hydrog
WATSON-CRICK
E
G
311
E
O6
G
11
1_555
F
C
318
F
N4
C
2
1_555
hydrog
WATSON-CRICK
E
G
312
E
N1
G
12
1_555
F
C
317
F
N3
C
1
1_555
hydrog
WATSON-CRICK
E
G
312
E
N2
G
12
1_555
F
C
317
F
O2
C
1
1_555
hydrog
WATSON-CRICK
E
G
312
E
O6
G
12
1_555
F
C
317
F
N4
C
1
1_555
hydrog
REVERSED WATSON-CRICK
G
C
402
G
N3
C
2
1_555
H
G
429
H
N2
G
13
1_555
hydrog
REVERSED WATSON-CRICK
G
C
402
G
O2
C
2
1_555
H
G
429
H
N1
G
13
1_555
hydrog
WATSON-CRICK
G
U
403
G
N3
U
3
1_555
H
A
428
H
N1
A
12
1_555
hydrog
WATSON-CRICK
G
U
403
G
O4
U
3
1_555
H
A
428
H
N6
A
12
1_555
hydrog
WATSON-CRICK
G
G
404
G
N1
G
4
1_555
H
C
427
H
N3
C
11
1_555
hydrog
WATSON-CRICK
G
G
404
G
N2
G
4
1_555
H
C
427
H
O2
C
11
1_555
hydrog
WATSON-CRICK
G
G
404
G
O6
G
4
1_555
H
C
427
H
N4
C
11
1_555
hydrog
TYPE_6_PAIR
G
G
406
G
N1
G
6
1_555
H
G
424
H
O6
G
8
1_555
hydrog
TYPE_6_PAIR
G
G
406
G
N2
G
6
1_555
H
G
424
H
N7
G
8
1_555
hydrog
WATSON-CRICK
G
C
407
G
N3
C
7
1_555
H
G
423
H
N1
G
7
1_555
hydrog
WATSON-CRICK
G
C
407
G
N4
C
7
1_555
H
G
423
H
O6
G
7
1_555
hydrog
WATSON-CRICK
G
C
407
G
O2
C
7
1_555
H
G
423
H
N2
G
7
1_555
hydrog
WATSON-CRICK
G
G
408
G
N1
G
8
1_555
H
C
422
H
N3
C
6
1_555
hydrog
WATSON-CRICK
G
G
408
G
N2
G
8
1_555
H
C
422
H
O2
C
6
1_555
hydrog
WATSON-CRICK
G
G
408
G
O6
G
8
1_555
H
C
422
H
N4
C
6
1_555
hydrog
WATSON-CRICK
G
C
409
G
N3
C
9
1_555
H
G
420
H
N1
G
4
1_555
hydrog
WATSON-CRICK
G
C
409
G
N4
C
9
1_555
H
G
420
H
O6
G
4
1_555
hydrog
WATSON-CRICK
G
C
409
G
O2
C
9
1_555
H
G
420
H
N2
G
4
1_555
hydrog
WATSON-CRICK
G
A
410
G
N1
A
10
1_555
H
U
419
H
N3
U
3
1_555
hydrog
WATSON-CRICK
G
A
410
G
N6
A
10
1_555
H
U
419
H
O4
U
3
1_555
hydrog
WATSON-CRICK
G
G
411
G
N1
G
11
1_555
H
C
418
H
N3
C
2
1_555
hydrog
WATSON-CRICK
G
G
411
G
N2
G
11
1_555
H
C
418
H
O2
C
2
1_555
hydrog
WATSON-CRICK
G
G
411
G
O6
G
11
1_555
H
C
418
H
N4
C
2
1_555
hydrog
WATSON-CRICK
G
G
412
G
N1
G
12
1_555
H
C
417
H
N3
C
1
1_555
hydrog
WATSON-CRICK
G
G
412
G
N2
G
12
1_555
H
C
417
H
O2
C
1
1_555
hydrog
WATSON-CRICK
G
G
412
G
O6
G
12
1_555
H
C
417
H
N4
C
1
1_555
RNA
RRE, HIV-1, REV BINDING DOMAIN, RNA
1DUQ
PDB
1
1DUQ
1DUQ
PDB
2
1DUQ
101
112
1DUQ
101
112
1DUQ
A
1
1
12
117
130
1DUQ
117
130
1DUQ
B
2
1
14
201
212
1DUQ
201
212
1DUQ
C
1
1
12
217
230
1DUQ
217
230
1DUQ
D
2
1
14
301
312
1DUQ
301
312
1DUQ
E
1
1
12
317
330
1DUQ
317
330
1DUQ
F
2
1
14
401
412
1DUQ
401
412
1DUQ
G
1
1
12
417
430
1DUQ
417
430
1DUQ
H
2
1
14
BINDING SITE FOR RESIDUE NA D 901
D
NA
901
Software
3
BINDING SITE FOR RESIDUE NA H 902
H
NA
902
Software
5
BINDING SITE FOR RESIDUE NA H 903
H
NA
903
Software
3
BINDING SITE FOR RESIDUE NA C 904
C
NA
904
Software
5
BINDING SITE FOR RESIDUE NA G 905
G
NA
905
Software
2
BINDING SITE FOR RESIDUE NA C 906
C
NA
906
Software
2
BINDING SITE FOR RESIDUE NA B 911
B
NA
911
Software
4
BINDING SITE FOR RESIDUE NA E 912
E
NA
912
Software
4
BINDING SITE FOR RESIDUE NA C 913
C
NA
913
Software
5
BINDING SITE FOR RESIDUE NA G 914
G
NA
914
Software
5
D
G
220
D
G
4
3
1_555
D
A
221
D
A
5
3
1_555
D
C
222
D
C
6
3
1_555
G
G
406
G
G
6
5
1_555
G
HOH
635
Y
HOH
5
1_555
H
G
423
H
G
7
5
1_555
H
G
424
H
G
8
5
1_555
H
HOH
602
Z
HOH
5
1_555
H
G
420
H
G
4
3
1_555
H
A
421
H
A
5
3
1_555
H
C
422
H
C
6
3
1_555
C
G
206
C
G
6
5
1_555
C
HOH
631
U
HOH
5
1_555
D
G
223
D
G
7
5
1_555
D
G
224
D
G
8
5
1_555
D
HOH
601
V
HOH
5
1_555
G
G
401
G
G
1
2
1_555
G
C
402
G
C
2
2
1_555
C
G
201
C
G
1
2
1_555
C
C
202
C
C
2
2
1_555
A
G
106
A
G
6
4
1_555
A
HOH
603
S
HOH
4
1_555
B
G
123
B
G
7
4
1_555
B
G
124
B
G
8
4
1_555
E
G
306
E
G
6
4
1_555
F
G
323
F
G
7
4
1_555
F
G
324
F
G
8
4
1_555
F
A
326
F
A
10
4
1_555
B
C
117
B
C
1
5
1_555
C
G
201
C
G
1
5
1_555
C
C
202
C
C
2
5
1_555
D
C
230
D
C
14
5
1_555
G
U
403
G
U
3
5
1_445
C
U
203
C
U
3
5
1_665
F
C
317
F
C
1
5
1_555
G
G
401
G
G
1
5
1_555
G
C
402
G
C
2
5
1_555
H
C
430
H
C
14
5
1_555
1
triclinic
P 1