0.014422 0.000000 0.000000 0.000000 0.027189 0.000000 0.000000 0.000000 0.014633 0.00000 0.00000 0.00000 Hung, L. Huang, L. Kim, R. Kim, S.H. Berkeley Structural Genomics Center (BSGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 69.340 36.780 68.340 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.STRUCT.FUNCT.GENOM. 1345-711X 2 121 127 10.1023/A:1021279113558 12836702 Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1998-07-31 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9797 1.0 5.0.2 ALS 0.9797 SYNCHROTRON ALS BEAMLINE 5.0.2 21945.170 MJ0882 1 man polymer 18.015 water 163 nat water no yes FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTT (MSE)ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW VVIQTKQGAKSLAKY(MSE)KDVFGNVETVTIKGGYRVLKSKKL FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMA DINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK QGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKKL A BSGCAIR30382 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanocaldococcus Escherichia sample 2190 Methanocaldococcus jannaschii 562 Escherichia coli 1 1.99 38.05 VAPOR DIFFUSION, HANGING DROP 5.13 2.75 M ammonium sulfate, 0.1 M MES, pH 5.13, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 Berkeley Structural Genomics Center BSGC PSI, Protein Structure Initiative repository Initial release Version format compliance Version format compliance 1 0 2000-07-19 1 1 2008-04-27 1 2 2011-07-13 Y RCSB Y RCSB 2000-01-18 REL HOH water HOH 401 2 HOH HOH 401 A HOH 402 2 HOH HOH 402 A HOH 403 2 HOH HOH 403 A HOH 404 2 HOH HOH 404 A HOH 405 2 HOH HOH 405 A HOH 406 2 HOH HOH 406 A HOH 407 2 HOH HOH 407 A HOH 408 2 HOH HOH 408 A HOH 409 2 HOH HOH 409 A HOH 410 2 HOH HOH 410 A HOH 411 2 HOH HOH 411 A HOH 412 2 HOH HOH 412 A HOH 413 2 HOH HOH 413 A HOH 414 2 HOH HOH 414 A HOH 415 2 HOH HOH 415 A HOH 416 2 HOH HOH 416 A HOH 417 2 HOH HOH 417 A HOH 418 2 HOH HOH 418 A HOH 419 2 HOH HOH 419 A HOH 420 2 HOH HOH 420 A HOH 421 2 HOH HOH 421 A HOH 422 2 HOH HOH 422 A HOH 423 2 HOH HOH 423 A HOH 424 2 HOH HOH 424 A HOH 425 2 HOH HOH 425 A HOH 426 2 HOH HOH 426 A HOH 427 2 HOH HOH 427 A HOH 428 2 HOH HOH 428 A HOH 429 2 HOH HOH 429 A HOH 430 2 HOH HOH 430 A HOH 431 2 HOH HOH 431 A HOH 432 2 HOH HOH 432 A HOH 433 2 HOH HOH 433 A HOH 434 2 HOH HOH 434 A HOH 435 2 HOH HOH 435 A HOH 436 2 HOH HOH 436 A HOH 437 2 HOH HOH 437 A HOH 438 2 HOH HOH 438 A HOH 439 2 HOH HOH 439 A HOH 440 2 HOH HOH 440 A HOH 441 2 HOH HOH 441 A HOH 442 2 HOH HOH 442 A HOH 443 2 HOH HOH 443 A HOH 444 2 HOH HOH 444 A HOH 445 2 HOH HOH 445 A HOH 446 2 HOH HOH 446 A HOH 447 2 HOH HOH 447 A HOH 448 2 HOH HOH 448 A HOH 449 2 HOH HOH 449 A HOH 450 2 HOH HOH 450 A HOH 451 2 HOH HOH 451 A HOH 452 2 HOH HOH 452 A HOH 453 2 HOH HOH 453 A HOH 454 2 HOH HOH 454 A HOH 455 2 HOH HOH 455 A HOH 456 2 HOH HOH 456 A HOH 457 2 HOH HOH 457 A HOH 458 2 HOH HOH 458 A HOH 459 2 HOH HOH 459 A HOH 460 2 HOH HOH 460 A HOH 461 2 HOH HOH 461 A HOH 462 2 HOH HOH 462 A HOH 463 2 HOH HOH 463 A HOH 464 2 HOH HOH 464 A HOH 465 2 HOH HOH 465 A HOH 466 2 HOH HOH 466 A HOH 467 2 HOH HOH 467 A HOH 468 2 HOH HOH 468 A HOH 469 2 HOH HOH 469 A HOH 470 2 HOH HOH 470 A HOH 471 2 HOH HOH 471 A HOH 472 2 HOH HOH 472 A HOH 473 2 HOH HOH 473 A HOH 474 2 HOH HOH 474 A HOH 475 2 HOH HOH 475 A HOH 476 2 HOH HOH 476 A HOH 477 2 HOH HOH 477 A HOH 478 2 HOH HOH 478 A HOH 479 2 HOH HOH 479 A HOH 480 2 HOH HOH 480 A HOH 481 2 HOH HOH 481 A HOH 482 2 HOH HOH 482 A HOH 483 2 HOH HOH 483 A HOH 484 2 HOH HOH 484 A HOH 485 2 HOH HOH 485 A HOH 486 2 HOH HOH 486 A HOH 487 2 HOH HOH 487 A HOH 488 2 HOH HOH 488 A HOH 489 2 HOH HOH 489 A HOH 490 2 HOH HOH 490 A HOH 491 2 HOH HOH 491 A HOH 492 2 HOH HOH 492 A HOH 493 2 HOH HOH 493 A HOH 494 2 HOH HOH 494 A HOH 495 2 HOH HOH 495 A HOH 496 2 HOH HOH 496 A HOH 497 2 HOH HOH 497 A HOH 498 2 HOH HOH 498 A HOH 499 2 HOH HOH 499 A HOH 500 2 HOH HOH 500 A HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 515 2 HOH HOH 515 A HOH 516 2 HOH HOH 516 A HOH 517 2 HOH HOH 517 A HOH 518 2 HOH HOH 518 A HOH 519 2 HOH HOH 519 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 529 2 HOH HOH 529 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 535 2 HOH HOH 535 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 539 2 HOH HOH 539 A HOH 540 2 HOH HOH 540 A HOH 541 2 HOH HOH 541 A HOH 542 2 HOH HOH 542 A HOH 543 2 HOH HOH 543 A HOH 544 2 HOH HOH 544 A HOH 545 2 HOH HOH 545 A HOH 546 2 HOH HOH 546 A HOH 547 2 HOH HOH 547 A HOH 548 2 HOH HOH 548 A HOH 549 2 HOH HOH 549 A HOH 550 2 HOH HOH 550 A HOH 551 2 HOH HOH 551 A HOH 552 2 HOH HOH 552 A HOH 553 2 HOH HOH 553 A HOH 554 2 HOH HOH 554 A HOH 555 2 HOH HOH 555 A HOH 556 2 HOH HOH 556 A HOH 557 2 HOH HOH 557 A HOH 558 2 HOH HOH 558 A HOH 559 2 HOH HOH 559 A HOH 560 2 HOH HOH 560 A HOH 561 2 HOH HOH 561 A HOH 562 2 HOH HOH 562 A HOH 563 2 HOH HOH 563 A PHE 4 n 1 PHE 4 A SER 5 n 2 SER 5 A GLU 6 n 3 GLU 6 A LYS 7 n 4 LYS 7 A PRO 8 n 5 PRO 8 A THR 9 n 6 THR 9 A THR 10 n 7 THR 10 A LYS 11 n 8 LYS 11 A SER 12 n 9 SER 12 A ASP 13 n 10 ASP 13 A VAL 14 n 11 VAL 14 A LYS 15 n 12 LYS 15 A ILE 16 n 13 ILE 16 A VAL 17 n 14 VAL 17 A GLU 18 n 15 GLU 18 A ASP 19 n 16 ASP 19 A ILE 20 n 17 ILE 20 A LEU 21 n 18 LEU 21 A ARG 22 n 19 ARG 22 A GLY 23 n 20 GLY 23 A LYS 24 n 21 LYS 24 A LYS 25 n 22 LYS 25 A LEU 26 n 23 LEU 26 A LYS 27 n 24 LYS 27 A PHE 28 n 25 PHE 28 A LYS 29 n 26 LYS 29 A THR 30 n 27 THR 30 A ASP 31 n 28 ASP 31 A SER 32 n 29 SER 32 A GLY 33 n 30 GLY 33 A VAL 34 n 31 VAL 34 A PHE 35 n 32 PHE 35 A SER 36 n 33 SER 36 A TYR 37 n 34 TYR 37 A GLY 38 n 35 GLY 38 A LYS 39 n 36 LYS 39 A VAL 40 n 37 VAL 40 A ASP 41 n 38 ASP 41 A LYS 42 n 39 LYS 42 A GLY 43 n 40 GLY 43 A THR 44 n 41 THR 44 A LYS 45 n 42 LYS 45 A ILE 46 n 43 ILE 46 A LEU 47 n 44 LEU 47 A VAL 48 n 45 VAL 48 A GLU 49 n 46 GLU 49 A ASN 50 n 47 ASN 50 A VAL 51 n 48 VAL 51 A VAL 52 n 49 VAL 52 A VAL 53 n 50 VAL 53 A ASP 54 n 51 ASP 54 A LYS 55 n 52 LYS 55 A ASP 56 n 53 ASP 56 A ASP 57 n 54 ASP 57 A ASP 58 n 55 ASP 58 A ILE 59 n 56 ILE 59 A LEU 60 n 57 LEU 60 A ASP 61 n 58 ASP 61 A LEU 62 n 59 LEU 62 A GLY 63 n 60 GLY 63 A CYS 64 n 61 CYS 64 A GLY 65 n 62 GLY 65 A TYR 66 n 63 TYR 66 A GLY 67 n 64 GLY 67 A VAL 68 n 65 VAL 68 A ILE 69 n 66 ILE 69 A GLY 70 n 67 GLY 70 A ILE 71 n 68 ILE 71 A ALA 72 n 69 ALA 72 A LEU 73 n 70 LEU 73 A ALA 74 n 71 ALA 74 A ASP 75 n 72 ASP 75 A GLU 76 n 73 GLU 76 A VAL 77 n 74 VAL 77 A LYS 78 n 75 LYS 78 A SER 79 n 76 SER 79 A THR 80 n 77 THR 80 A THR 81 n 78 THR 81 A MSE 82 n 79 MSE 82 A ALA 83 n 80 ALA 83 A ASP 84 n 81 ASP 84 A ILE 85 n 82 ILE 85 A ASN 86 n 83 ASN 86 A ARG 87 n 84 ARG 87 A ARG 88 n 85 ARG 88 A ALA 89 n 86 ALA 89 A ILE 90 n 87 ILE 90 A LYS 91 n 88 LYS 91 A LEU 92 n 89 LEU 92 A ALA 93 n 90 ALA 93 A LYS 94 n 91 LYS 94 A GLU 95 n 92 GLU 95 A ASN 96 n 93 ASN 96 A ILE 97 n 94 ILE 97 A LYS 98 n 95 LYS 98 A LEU 99 n 96 LEU 99 A ASN 100 n 97 ASN 100 A ASN 101 n 98 ASN 101 A LEU 102 n 99 LEU 102 A ASP 103 n 100 ASP 103 A ASN 104 n 101 ASN 104 A TYR 105 n 102 TYR 105 A ASP 106 n 103 ASP 106 A ILE 107 n 104 ILE 107 A ARG 108 n 105 ARG 108 A VAL 109 n 106 VAL 109 A VAL 110 n 107 VAL 110 A HIS 111 n 108 HIS 111 A SER 112 n 109 SER 112 A ASP 113 n 110 ASP 113 A LEU 114 n 111 LEU 114 A TYR 115 n 112 TYR 115 A GLU 116 n 113 GLU 116 A ASN 117 n 114 ASN 117 A VAL 118 n 115 VAL 118 A LYS 119 n 116 LYS 119 A ASP 120 n 117 ASP 120 A ARG 121 n 118 ARG 121 A LYS 122 n 119 LYS 122 A TYR 123 n 120 TYR 123 A ASN 124 n 121 ASN 124 A LYS 125 n 122 LYS 125 A ILE 126 n 123 ILE 126 A ILE 127 n 124 ILE 127 A THR 128 n 125 THR 128 A ASN 129 n 126 ASN 129 A PRO 130 n 127 PRO 130 A PRO 131 n 128 PRO 131 A ILE 132 n 129 ILE 132 A ARG 133 n 130 ARG 133 A ALA 134 n 131 ALA 134 A GLY 135 n 132 GLY 135 A LYS 136 n 133 LYS 136 A GLU 137 n 134 GLU 137 A VAL 138 n 135 VAL 138 A LEU 139 n 136 LEU 139 A HIS 140 n 137 HIS 140 A ARG 141 n 138 ARG 141 A ILE 142 n 139 ILE 142 A ILE 143 n 140 ILE 143 A GLU 144 n 141 GLU 144 A GLU 145 n 142 GLU 145 A GLY 146 n 143 GLY 146 A LYS 147 n 144 LYS 147 A GLU 148 n 145 GLU 148 A LEU 149 n 146 LEU 149 A LEU 150 n 147 LEU 150 A LYS 151 n 148 LYS 151 A ASP 152 n 149 ASP 152 A ASN 153 n 150 ASN 153 A GLY 154 n 151 GLY 154 A GLU 155 n 152 GLU 155 A ILE 156 n 153 ILE 156 A TRP 157 n 154 TRP 157 A VAL 158 n 155 VAL 158 A VAL 159 n 156 VAL 159 A ILE 160 n 157 ILE 160 A GLN 161 n 158 GLN 161 A THR 162 n 159 THR 162 A LYS 163 n 160 LYS 163 A GLN 164 n 161 GLN 164 A GLY 165 n 162 GLY 165 A ALA 166 n 163 ALA 166 A LYS 167 n 164 LYS 167 A SER 168 n 165 SER 168 A LEU 169 n 166 LEU 169 A ALA 170 n 167 ALA 170 A LYS 171 n 168 LYS 171 A TYR 172 n 169 TYR 172 A MSE 173 n 170 MSE 173 A LYS 174 n 171 LYS 174 A ASP 175 n 172 ASP 175 A VAL 176 n 173 VAL 176 A PHE 177 n 174 PHE 177 A GLY 178 n 175 GLY 178 A ASN 179 n 176 ASN 179 A VAL 180 n 177 VAL 180 A GLU 181 n 178 GLU 181 A THR 182 n 179 THR 182 A VAL 183 n 180 VAL 183 A THR 184 n 181 THR 184 A ILE 185 n 182 ILE 185 A LYS 186 n 183 LYS 186 A GLY 187 n 184 GLY 187 A GLY 188 n 185 GLY 188 A TYR 189 n 186 TYR 189 A ARG 190 n 187 ARG 190 A VAL 191 n 188 VAL 191 A LEU 192 n 189 LEU 192 A LYS 193 n 190 LYS 193 A SER 194 n 191 SER 194 A LYS 195 n 192 LYS 195 A LYS 196 n 193 LYS 196 A LEU 197 n 194 LEU 197 A author_defined_assembly 1 monomeric A MSE 82 SELENOMETHIONINE A MSE 79 MET A MSE 173 SELENOMETHIONINE A MSE 170 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 21 A O LEU 18 A N LYS 24 A N LYS 21 A N ARG 108 A N ARG 105 A O THR 80 A O THR 77 A O SER 79 A O SER 76 A N ILE 59 A N ILE 56 A O ASP 58 A O ASP 55 A N ASN 124 A N ASN 121 A O TYR 123 A O TYR 120 A N LYS 151 A N LYS 148 A O ILE 160 A O ILE 157 A N ARG 190 A N ARG 187 A N LYS 193 A N LYS 190 A O GLU 181 A O GLU 178 1 A HOH 462 B HOH 1 A A O O HOH HOH 401 507 2.07 1_555 3_545 1 A A OE1 O GLU HOH 137 405 2.13 1_555 2_665 1 A LEU 114 54.27 -122.95 1 A THR 162 -33.04 -174.09 1 A LYS 163 72.64 -136.17 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER_REP.TOP ION.PARAM ION.TOP 23.2 1.90 0.00 0.00 -0.15 0.00 -1.76 0.235 0.006 0.188 0.192 0.188 1.80 19.57 1609 16808 16370 9.8 97.4 RANDOM 543599.17 0.00 1 RESTRAINED THROUGHOUT 2.0 2.0 Engh & Huber FLAT MODEL 50.36 0.385 0.23 0.18 5.00 0.06 0.03 1.80 19.57 163 1697 0 0 1534 0.010 1.7 23.9 0.92 2.43 2.00 3.20 2.50 3.35 2.00 5.01 2.50 0.231 0.015 0.173 1.91 253 2270 6 10.0 92.0 14.8 1.6 20.0 1DUS 23830 23819 0 0 0.077 1 9.4 8 99.9 0.32 1.60 1.63 1153 8 99.2 data reduction DENZO data scaling SCALEPACK phasing SOLVE refinement CNS 0.9 MJ0882 MJ0882-A hypothetical protein from M. jannaschii 1 N N 2 N N A ASP 41 A ASP 38 HELX_P A VAL 51 A VAL 48 1 1 11 A GLY 67 A GLY 64 HELX_P A ALA 74 A ALA 71 1 2 8 A ASP 75 A ASP 72 HELX_P A VAL 77 A VAL 74 5 3 3 A ASN 86 A ASN 83 HELX_P A ASN 100 A ASN 97 1 4 15 A GLY 135 A GLY 132 HELX_P A LEU 149 A LEU 146 1 5 15 A LYS 163 A LYS 160 HELX_P A GLY 178 A GLY 175 1 6 16 covale 1.335 A THR 81 A C THR 78 1_555 A MSE 82 A N MSE 79 1_555 covale 1.323 A MSE 82 A C MSE 79 1_555 A ALA 83 A N ALA 80 1_555 covale 1.331 A TYR 172 A C TYR 169 1_555 A MSE 173 A N MSE 170 1_555 covale 1.327 A MSE 173 A C MSE 170 1_555 A LYS 174 A N LYS 171 1_555 STRUCTURAL GENOMICS Hypothetical protein, Methanococcus jannaschii, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center Y882_METJA UNP 1 Q58292 4 197 1DUS 4 197 Q58292 A 1 1 194 1 MET MODIFIED RESIDUE MSE 82 1DUS A Q58292 UNP 82 79 1 MET MODIFIED RESIDUE MSE 173 1DUS A Q58292 UNP 173 170 2 7 anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel A VAL 14 A VAL 11 A LEU 21 A LEU 18 A LYS 24 A LYS 21 A ASP 31 A ASP 28 A ILE 107 A ILE 104 A HIS 111 A HIS 108 A SER 79 A SER 76 A ASP 84 A ASP 81 A ASP 58 A ASP 55 A LEU 62 A LEU 59 A TYR 123 A TYR 120 A THR 128 A THR 125 A LEU 150 A LEU 147 A GLN 161 A GLN 158 A TYR 189 A TYR 186 A LYS 195 A LYS 192 A GLU 181 A GLU 178 A LYS 186 A LYS 183 18 P 21 21 2