0.012531 0.007235 0.000000 0.000000 0.014470 0.000000 0.000000 0.000000 0.011501 0.00000 0.00000 0.00000 Prasad, G.S. Stura, E.A. Mcree, D.E. Laco, G.S. Hasselkus-Light, C. Elder, J.H. Stout, C.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 79.800 79.800 86.950 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MG N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Protein Sci. PRCIEI 0795 0961-8368 5 2429 2437 8976551 Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus. 1996 10.2210/pdb1dut/pdb pdb_00001dut 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE MARRESEARCH M x-ray 1 1.08 1.0 BL7-1 SSRL 1.08 SYNCHROTRON SSRL BEAMLINE BL7-1 14369.802 DUTP PYROPHOSPHATASE 3.6.1.23 2 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 72 nat water DUTPASE, DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE no no MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVF MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Feline immunodeficiency virus (isolate Petaluma) cabbage looper Trichoplusia sample 11674 Feline immunodeficiency virus TN5 7111 Trichoplusia ni BACULOVIRUS 2.78 55. diffrn_detector pdbx_database_status chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Source and taxonomy Version format compliance Atomic model Data collection Other Data collection Database references Derived calculations 1 0 1997-01-27 1 1 2008-03-03 1 2 2011-07-13 1 3 2011-11-16 1 4 2018-03-21 1 5 2024-02-07 _diffrn_detector.pdbx_collection_date _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-09-15 REL MG MAGNESIUM ION HOH water MG 1 2 MG MG 134 A MG 1 2 MG MG 134 B HOH 1 3 HOH HOH 135 A HOH 2 3 HOH HOH 136 A HOH 3 3 HOH HOH 137 A HOH 4 3 HOH HOH 138 A HOH 5 3 HOH HOH 139 A HOH 6 3 HOH HOH 140 A HOH 7 3 HOH HOH 141 A HOH 8 3 HOH HOH 142 A HOH 9 3 HOH HOH 143 A HOH 10 3 HOH HOH 144 A HOH 11 3 HOH HOH 145 A HOH 12 3 HOH HOH 146 A HOH 13 3 HOH HOH 147 A HOH 14 3 HOH HOH 148 A HOH 15 3 HOH HOH 149 A HOH 16 3 HOH HOH 150 A HOH 17 3 HOH HOH 151 A HOH 18 3 HOH HOH 152 A HOH 19 3 HOH HOH 153 A HOH 20 3 HOH HOH 154 A HOH 21 3 HOH HOH 155 A HOH 23 3 HOH HOH 156 A HOH 24 3 HOH HOH 157 A HOH 25 3 HOH HOH 158 A HOH 26 3 HOH HOH 159 A HOH 27 3 HOH HOH 160 A HOH 28 3 HOH HOH 161 A HOH 29 3 HOH HOH 162 A HOH 30 3 HOH HOH 163 A HOH 31 3 HOH HOH 164 A HOH 32 3 HOH HOH 165 A HOH 33 3 HOH HOH 166 A HOH 34 3 HOH HOH 167 A HOH 35 3 HOH HOH 168 A HOH 36 3 HOH HOH 169 A HOH 37 3 HOH HOH 170 A HOH 38 3 HOH HOH 171 A HOH 39 3 HOH HOH 172 A HOH 40 3 HOH HOH 173 A HOH 41 3 HOH HOH 174 A HOH 58 3 HOH HOH 175 A HOH 60 3 HOH HOH 176 A HOH 61 3 HOH HOH 177 A HOH 62 3 HOH HOH 178 A HOH 64 3 HOH HOH 179 A HOH 65 3 HOH HOH 180 A HOH 66 3 HOH HOH 181 A HOH 69 3 HOH HOH 182 A HOH 70 3 HOH HOH 183 A HOH 22 3 HOH HOH 135 B HOH 42 3 HOH HOH 136 B HOH 43 3 HOH HOH 137 B HOH 44 3 HOH HOH 138 B HOH 45 3 HOH HOH 139 B HOH 46 3 HOH HOH 140 B HOH 47 3 HOH HOH 141 B HOH 48 3 HOH HOH 142 B HOH 49 3 HOH HOH 143 B HOH 50 3 HOH HOH 144 B HOH 51 3 HOH HOH 145 B HOH 52 3 HOH HOH 146 B HOH 53 3 HOH HOH 147 B HOH 54 3 HOH HOH 148 B HOH 55 3 HOH HOH 149 B HOH 56 3 HOH HOH 150 B HOH 57 3 HOH HOH 151 B HOH 59 3 HOH HOH 152 B HOH 63 3 HOH HOH 153 B HOH 67 3 HOH HOH 154 B HOH 68 3 HOH HOH 155 B HOH 71 3 HOH HOH 156 B HOH 72 3 HOH HOH 157 B MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A ILE 3 n 3 ILE 3 A GLU 4 n 4 GLU 4 A GLY 5 n 5 GLY 5 A ASP 6 n 6 ASP 6 A GLY 7 n 7 GLY 7 A ILE 8 n 8 ILE 8 A LEU 9 n 9 LEU 9 A ASP 10 n 10 ASP 10 A LYS 11 n 11 LYS 11 A ARG 12 n 12 ARG 12 A SER 13 n 13 SER 13 A GLU 14 n 14 GLU 14 A ASP 15 n 15 ASP 15 A ALA 16 n 16 ALA 16 A GLY 17 n 17 GLY 17 A TYR 18 n 18 TYR 18 A ASP 19 n 19 ASP 19 A LEU 20 n 20 LEU 20 A LEU 21 n 21 LEU 21 A ALA 22 n 22 ALA 22 A ALA 23 n 23 ALA 23 A LYS 24 n 24 LYS 24 A GLU 25 n 25 GLU 25 A ILE 26 n 26 ILE 26 A HIS 27 n 27 HIS 27 A LEU 28 n 28 LEU 28 A LEU 29 n 29 LEU 29 A PRO 30 n 30 PRO 30 A GLY 31 n 31 GLY 31 A GLU 32 n 32 GLU 32 A VAL 33 n 33 VAL 33 A LYS 34 n 34 LYS 34 A VAL 35 n 35 VAL 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A THR 38 n 38 THR 38 A GLY 39 n 39 GLY 39 A VAL 40 n 40 VAL 40 A LYS 41 n 41 LYS 41 A LEU 42 n 42 LEU 42 A MET 43 n 43 MET 43 A LEU 44 n 44 LEU 44 A PRO 45 n 45 PRO 45 A LYS 46 n 46 LYS 46 A GLY 47 n 47 GLY 47 A TYR 48 n 48 TYR 48 A TRP 49 n 49 TRP 49 A GLY 50 n 50 GLY 50 A LEU 51 n 51 LEU 51 A ILE 52 n 52 ILE 52 A ILE 53 n 53 ILE 53 A GLY 54 n 54 GLY 54 A LYS 55 n 55 LYS 55 A SER 56 n 56 SER 56 A SER 57 n 57 SER 57 A ILE 58 n 58 ILE 58 A GLY 59 n 59 GLY 59 A SER 60 n 60 SER 60 A LYS 61 n 61 LYS 61 A GLY 62 n 62 GLY 62 A LEU 63 n 63 LEU 63 A ASP 64 n 64 ASP 64 A VAL 65 n 65 VAL 65 A LEU 66 n 66 LEU 66 A GLY 67 n 67 GLY 67 A GLY 68 n 68 GLY 68 A VAL 69 n 69 VAL 69 A ILE 70 n 70 ILE 70 A ASP 71 n 71 ASP 71 A GLU 72 n 72 GLU 72 A GLY 73 n 73 GLY 73 A TYR 74 n 74 TYR 74 A ARG 75 n 75 ARG 75 A GLY 76 n 76 GLY 76 A GLU 77 n 77 GLU 77 A ILE 78 n 78 ILE 78 A GLY 79 n 79 GLY 79 A VAL 80 n 80 VAL 80 A ILE 81 n 81 ILE 81 A MET 82 n 82 MET 82 A ILE 83 n 83 ILE 83 A ASN 84 n 84 ASN 84 A VAL 85 n 85 VAL 85 A SER 86 n 86 SER 86 A ARG 87 n 87 ARG 87 A LYS 88 n 88 LYS 88 A SER 89 n 89 SER 89 A ILE 90 n 90 ILE 90 A THR 91 n 91 THR 91 A LEU 92 n 92 LEU 92 A MET 93 n 93 MET 93 A GLU 94 n 94 GLU 94 A ARG 95 n 95 ARG 95 A GLN 96 n 96 GLN 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A ALA 99 n 99 ALA 99 A GLN 100 n 100 GLN 100 A LEU 101 n 101 LEU 101 A ILE 102 n 102 ILE 102 A ILE 103 n 103 ILE 103 A LEU 104 n 104 LEU 104 A PRO 105 n 105 PRO 105 A CYS 106 n 106 CYS 106 A LYS 107 n 107 LYS 107 A HIS 108 n 108 HIS 108 A GLU 109 n 109 GLU 109 A VAL 110 n 110 VAL 110 A LEU 111 n 111 LEU 111 A GLU 112 n 112 GLU 112 A GLN 113 n 113 GLN 113 A GLY 114 n 114 GLY 114 A LYS 115 n 115 LYS 115 A VAL 116 n 116 VAL 116 A VAL 117 n 117 VAL 117 A n 118 118 A n 119 119 A n 120 120 A n 121 121 A n 122 122 A n 123 123 A n 124 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A n 129 129 A n 130 130 A n 131 131 A n 132 132 A n 133 133 A MET 1 n 1 MET 1 B ILE 2 n 2 ILE 2 B ILE 3 n 3 ILE 3 B GLU 4 n 4 GLU 4 B GLY 5 n 5 GLY 5 B ASP 6 n 6 ASP 6 B GLY 7 n 7 GLY 7 B ILE 8 n 8 ILE 8 B LEU 9 n 9 LEU 9 B ASP 10 n 10 ASP 10 B LYS 11 n 11 LYS 11 B ARG 12 n 12 ARG 12 B SER 13 n 13 SER 13 B GLU 14 n 14 GLU 14 B ASP 15 n 15 ASP 15 B ALA 16 n 16 ALA 16 B GLY 17 n 17 GLY 17 B TYR 18 n 18 TYR 18 B ASP 19 n 19 ASP 19 B LEU 20 n 20 LEU 20 B LEU 21 n 21 LEU 21 B ALA 22 n 22 ALA 22 B ALA 23 n 23 ALA 23 B LYS 24 n 24 LYS 24 B GLU 25 n 25 GLU 25 B ILE 26 n 26 ILE 26 B HIS 27 n 27 HIS 27 B LEU 28 n 28 LEU 28 B LEU 29 n 29 LEU 29 B PRO 30 n 30 PRO 30 B GLY 31 n 31 GLY 31 B GLU 32 n 32 GLU 32 B VAL 33 n 33 VAL 33 B LYS 34 n 34 LYS 34 B VAL 35 n 35 VAL 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B THR 38 n 38 THR 38 B GLY 39 n 39 GLY 39 B VAL 40 n 40 VAL 40 B LYS 41 n 41 LYS 41 B LEU 42 n 42 LEU 42 B MET 43 n 43 MET 43 B LEU 44 n 44 LEU 44 B PRO 45 n 45 PRO 45 B LYS 46 n 46 LYS 46 B GLY 47 n 47 GLY 47 B TYR 48 n 48 TYR 48 B TRP 49 n 49 TRP 49 B GLY 50 n 50 GLY 50 B LEU 51 n 51 LEU 51 B ILE 52 n 52 ILE 52 B ILE 53 n 53 ILE 53 B GLY 54 n 54 GLY 54 B LYS 55 n 55 LYS 55 B SER 56 n 56 SER 56 B SER 57 n 57 SER 57 B ILE 58 n 58 ILE 58 B GLY 59 n 59 GLY 59 B SER 60 n 60 SER 60 B LYS 61 n 61 LYS 61 B GLY 62 n 62 GLY 62 B LEU 63 n 63 LEU 63 B ASP 64 n 64 ASP 64 B VAL 65 n 65 VAL 65 B LEU 66 n 66 LEU 66 B GLY 67 n 67 GLY 67 B GLY 68 n 68 GLY 68 B VAL 69 n 69 VAL 69 B ILE 70 n 70 ILE 70 B ASP 71 n 71 ASP 71 B GLU 72 n 72 GLU 72 B GLY 73 n 73 GLY 73 B TYR 74 n 74 TYR 74 B ARG 75 n 75 ARG 75 B GLY 76 n 76 GLY 76 B GLU 77 n 77 GLU 77 B ILE 78 n 78 ILE 78 B GLY 79 n 79 GLY 79 B VAL 80 n 80 VAL 80 B ILE 81 n 81 ILE 81 B MET 82 n 82 MET 82 B ILE 83 n 83 ILE 83 B ASN 84 n 84 ASN 84 B VAL 85 n 85 VAL 85 B SER 86 n 86 SER 86 B ARG 87 n 87 ARG 87 B LYS 88 n 88 LYS 88 B SER 89 n 89 SER 89 B ILE 90 n 90 ILE 90 B THR 91 n 91 THR 91 B LEU 92 n 92 LEU 92 B MET 93 n 93 MET 93 B GLU 94 n 94 GLU 94 B ARG 95 n 95 ARG 95 B GLN 96 n 96 GLN 96 B LYS 97 n 97 LYS 97 B ILE 98 n 98 ILE 98 B ALA 99 n 99 ALA 99 B GLN 100 n 100 GLN 100 B LEU 101 n 101 LEU 101 B ILE 102 n 102 ILE 102 B ILE 103 n 103 ILE 103 B LEU 104 n 104 LEU 104 B PRO 105 n 105 PRO 105 B CYS 106 n 106 CYS 106 B LYS 107 n 107 LYS 107 B HIS 108 n 108 HIS 108 B GLU 109 n 109 GLU 109 B VAL 110 n 110 VAL 110 B LEU 111 n 111 LEU 111 B GLU 112 n 112 GLU 112 B GLN 113 n 113 GLN 113 B GLY 114 n 114 GLY 114 B LYS 115 n 115 LYS 115 B VAL 116 n 116 VAL 116 B VAL 117 n 117 VAL 117 B n 118 118 B n 119 119 B n 120 120 B n 121 121 B n 122 122 B n 123 123 B n 124 124 B n 125 125 B n 126 126 B n 127 127 B n 128 128 B n 129 129 B n 130 130 B n 131 131 B n 132 132 B n 133 133 B author_and_software_defined_assembly PISA,PQS 3 trimeric author_and_software_defined_assembly PISA,PQS 3 trimeric 8790 -71 14530 9200 -93 13850 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 A ASP 64 A OD2 ASP 64 2_555 95.2 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 A ASP 64 A OD2 ASP 64 3_555 95.2 A ASP 64 A OD2 ASP 64 2_555 A MG 134 C MG MG 1_555 A ASP 64 A OD2 ASP 64 3_555 95.2 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 1_555 86.5 A ASP 64 A OD2 ASP 64 2_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 1_555 86.2 A ASP 64 A OD2 ASP 64 3_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 1_555 177.8 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 2_555 177.8 A ASP 64 A OD2 ASP 64 2_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 2_555 86.5 A ASP 64 A OD2 ASP 64 3_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 2_555 86.2 A HOH 147 E O HOH 1_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 2_555 92.1 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 86.2 A ASP 64 A OD2 ASP 64 2_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 177.8 A ASP 64 A OD2 ASP 64 3_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 86.5 A HOH 147 E O HOH 1_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 92.1 A HOH 147 E O HOH 2_555 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 92.1 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 B ASP 64 B OD2 ASP 64 3_565 59.7 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 B ASP 64 B OD2 ASP 64 2_665 59.5 B ASP 64 B OD2 ASP 64 3_565 B MG 134 D MG MG 1_555 B ASP 64 B OD2 ASP 64 2_665 60.3 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 1_555 91.2 B ASP 64 B OD2 ASP 64 3_565 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 1_555 139.2 B ASP 64 B OD2 ASP 64 2_665 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 1_555 80.7 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 2_665 141.9 B ASP 64 B OD2 ASP 64 3_565 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 2_665 83.3 B ASP 64 B OD2 ASP 64 2_665 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 2_665 95.6 B HOH 143 F O HOH 1_555 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 2_665 114.4 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 79.3 B ASP 64 B OD2 ASP 64 3_565 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 94.0 B ASP 64 B OD2 ASP 64 2_665 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 138.1 B HOH 143 F O HOH 1_555 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 109.0 B HOH 143 F O HOH 2_665 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 114.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 39.9000000000 69.1088272220 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -39.9000000000 69.1088272220 0.0000000000 A O ILE 26 A O ILE 26 A N LEU 92 A N LEU 92 A O LYS 34 A O LYS 34 A N MET 82 A N MET 82 A O ILE 81 A O ILE 81 A N LEU 66 A N LEU 66 A O TRP 49 A O TRP 49 A N LEU 104 A N LEU 104 A O ILE 98 A O ILE 98 A N LEU 20 A N LEU 20 B O ILE 2 B O ILE 2 B N MET 43 B N MET 43 B O ILE 26 B O ILE 26 B N LEU 92 B N LEU 92 B O LYS 34 B O LYS 34 B N MET 82 B N MET 82 B O ILE 81 B O ILE 81 B N LEU 66 B N LEU 66 B O TRP 49 B O TRP 49 B N LEU 104 B N LEU 104 B O ILE 98 B O ILE 98 B N LEU 20 B N LEU 20 1 A MG 134 C MG 1 B MG 134 D MG 1 A MET 118 A MET 118 1 Y 1 A ASP 119 A ASP 119 1 Y 1 A SER 120 A SER 120 1 Y 1 A GLU 121 A GLU 121 1 Y 1 A ARG 122 A ARG 122 1 Y 1 A GLY 123 A GLY 123 1 Y 1 A ASP 124 A ASP 124 1 Y 1 A ASN 125 A ASN 125 1 Y 1 A GLY 126 A GLY 126 1 Y 1 A TYR 127 A TYR 127 1 Y 1 A GLY 128 A GLY 128 1 Y 1 A SER 129 A SER 129 1 Y 1 A THR 130 A THR 130 1 Y 1 A GLY 131 A GLY 131 1 Y 1 A VAL 132 A VAL 132 1 Y 1 A PHE 133 A PHE 133 1 Y 1 B MET 118 B MET 118 1 Y 1 B ASP 119 B ASP 119 1 Y 1 B SER 120 B SER 120 1 Y 1 B GLU 121 B GLU 121 1 Y 1 B ARG 122 B ARG 122 1 Y 1 B GLY 123 B GLY 123 1 Y 1 B ASP 124 B ASP 124 1 Y 1 B ASN 125 B ASN 125 1 Y 1 B GLY 126 B GLY 126 1 Y 1 B TYR 127 B TYR 127 1 Y 1 B GLY 128 B GLY 128 1 Y 1 B SER 129 B SER 129 1 Y 1 B THR 130 B THR 130 1 Y 1 B GLY 131 B GLY 131 1 Y 1 B VAL 132 B VAL 132 1 Y 1 B PHE 133 B PHE 133 1 Y 1 -11.51 1.90 111.40 99.89 A A A CB CA C VAL VAL VAL 33 33 33 N 1 -15.64 2.00 111.60 95.96 A A A CB CA C ILE ILE ILE 83 83 83 N 1 -4.51 0.50 120.30 115.79 B B B NE CZ NH1 ARG ARG ARG 87 87 87 N 1 4.40 0.50 120.30 124.70 B B B NE CZ NH2 ARG ARG ARG 87 87 87 N 1 A A CB SG CYS CYS 106 106 -0.098 0.016 1.812 1.714 N 1 B B CZ NH1 ARG ARG 12 12 0.095 0.013 1.326 1.421 N 1 B B CZ NH2 ARG ARG 12 12 0.087 0.013 1.326 1.413 N 1 B B CD OE1 GLU GLU 112 112 0.095 0.011 1.252 1.347 N 1 B B CD OE2 GLU GLU 112 112 0.097 0.011 1.252 1.349 N 1 B VAL 85 -92.36 30.29 1 B SER 86 -114.55 -169.37 DUTP PYROPHOSPHATASE IS AN INTERDIGITATED, FUNCTIONAL TRIMER. IN THE STRUCTURE ONE TRIMER (CHAIN A) LIES ON A CRYSTALLOGRAPHIC 6(3) AXIS AND ANOTHER TRIMER (CHAIN B) LIES ON THE CRYSTALLOGRAPHIC THREE-FOLD AXIS. THE SPACE GROUP IS P6(3) WITH 2 MONOMERS (CHAINS A AND B) IN THE ASYMMETRIC UNIT. EACH MONOMER CONSISTS OF 117 RESIDUES AND A MG2+ ION COORDINATED ON THE THREE-FOLD AXIS OF THE TRIMER. THE C-TERMINAL 16 AMINO-ACIDS OF THE KNOWN PRIMARY SEQUENCE ARE DISORDERED IN EACH UNIQUE MONOMER. 0.2490000 0.2090000 0.2090000 1.9 7.0 23522 1 0.0 1.9 7.0 72 1848 2 0 1774 0.015 2.4 1DUT 116665 0.0 0.0640000 1 4.96 96.3 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction MOSFLM data reduction CCP4 phasing X-PLOR 3.1 FIV DUTP PYROPHOSPHATASE 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A SER 56 A SER 56 HELX_P A LYS 61 A LYS 61 1 1 6 B SER 56 B SER 56 HELX_P B LYS 61 B LYS 61 1 2 6 metalc 2.010 A ASP 64 A OD2 ASP 64 1_555 A MG 134 C MG MG 1_555 metalc 2.010 A ASP 64 A OD2 ASP 64 2_555 A MG 134 C MG MG 1_555 metalc 2.010 A ASP 64 A OD2 ASP 64 3_555 A MG 134 C MG MG 1_555 metalc 1.702 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 1_555 metalc 1.702 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 2_555 metalc 1.702 A MG 134 C MG MG 1_555 A HOH 147 E O HOH 3_555 metalc 2.775 B ASP 64 B OD2 ASP 64 1_555 B MG 134 D MG MG 1_555 metalc 2.703 B ASP 64 B OD2 ASP 64 3_565 B MG 134 D MG MG 1_555 metalc 2.725 B ASP 64 B OD2 ASP 64 2_665 B MG 134 D MG MG 1_555 metalc 1.610 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 1_555 metalc 1.499 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 2_665 metalc 1.601 B MG 134 D MG MG 1_555 B HOH 143 F O HOH 3_565 ASPARTYL PROTEASE POLYPROTEIN, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE, RNA-DIRECTED DNA POLYMERASE, NUCLEOTIDE METABOLISM, ACID ANHYDRIDE HYDROLASE POL_FIVPE UNP 1 1 P16088 KEFGKLEGGASCSPSESNAASSNAICTSNGGETIGFVNYNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRD FQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVMAQISDK IPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTE KGAEVQLGLPHPAGLQIKKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLD NIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQ LDIPEQPTLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARLEVQKAKKAIEEQVQLGYYDPSKEL YAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKAENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAWESNLIN SPYLKAPPPEVEYIHAALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEIQALLL ALKAGSEEMNIITDSQYVINIILQQPDMMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLCQTMMIIEGDGILD KRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSI TLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEE IRRKCPVCRIIGEQVGGQLKIGPGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQT DNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNFKRRGRIGGMA PYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALP EGDE 711 843 1DUT 1 133 P16088 A 1 1 133 711 843 1DUT 1 133 P16088 B 1 1 133 2 3 3 2 2 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 26 A ILE 26 A LEU 28 A LEU 28 A ILE 90 A ILE 90 A LEU 92 A LEU 92 A VAL 33 A VAL 33 A PRO 37 A PRO 37 A GLY 79 A GLY 79 A ASN 84 A ASN 84 A LEU 63 A LEU 63 A LEU 66 A LEU 66 A TYR 48 A TYR 48 A GLY 54 A GLY 54 A LYS 97 A LYS 97 A PRO 105 A PRO 105 A GLY 17 A GLY 17 A LEU 21 A LEU 21 B ILE 2 B ILE 2 B GLU 4 B GLU 4 B LYS 41 B LYS 41 B MET 43 B MET 43 B ILE 26 B ILE 26 B LEU 28 B LEU 28 B ILE 90 B ILE 90 B LEU 92 B LEU 92 B VAL 33 B VAL 33 B PRO 37 B PRO 37 B GLY 79 B GLY 79 B ASN 84 B ASN 84 B LEU 63 B LEU 63 B LEU 66 B LEU 66 B TYR 48 B TYR 48 B GLY 54 B GLY 54 B LYS 97 B LYS 97 B PRO 105 B PRO 105 B GLY 17 B GLY 17 B LEU 21 B LEU 21 BINDING SITE FOR RESIDUE MG A 134 A MG 134 Software 6 BINDING SITE FOR RESIDUE MG B 134 B MG 134 Software 6 A ASP 64 A ASP 64 6 1_555 A ASP 64 A ASP 64 6 2_555 A ASP 64 A ASP 64 6 3_555 A HOH 147 E HOH 6 2_555 A HOH 147 E HOH 6 3_555 A HOH 147 E HOH 6 1_555 B ASP 64 B ASP 64 6 1_555 B ASP 64 B ASP 64 6 3_565 B ASP 64 B ASP 64 6 2_665 B HOH 143 F HOH 6 1_555 B HOH 143 F HOH 6 3_565 B HOH 143 F HOH 6 2_665 173 P 63