.017588
.000000
.000000
.000000
.017588
.000000
.000000
.000000
.008034
.00000
.00000
.00000
Wu, N.
Mo, Y.
Gao, J.
Pai, E.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
56.858
56.858
124.476
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
2017
2022
10.1073/pnas.050417797
10681441
Electrostatic stress in catalysis: structure and mechanism of the enzyme orotidine monophosphate decarboxylase.
2000
10.2210/pdb1dv7/pdb
pdb_00001dv7
1.000000
.000000
.000000
.000000
1.000000
.000000
.000000
.000000
1.000000
.00000
.00000
.00000
100
1
CCD
1999-04-24
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
APS
1.0
SYNCHROTRON
APS
24753.500
OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
4.1.1.23
R101P
1
man
polymer
18.015
water
217
nat
water
OMPDECASE
no
no
RSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNE
KICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRP
ERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
RSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNE
KICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRP
ERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermobacter
Escherichia
sample
145262
Methanothermobacter thermautotrophicus
562
Escherichia coli
PLASMID
PET15B
1
2.03
39.45
VAPOR DIFFUSION, HANGING DROP
6.5
trisodium citrate, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Data collection
1
0
2000-04-05
1
1
2007-10-08
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Crystal structure of orotidine monophosphate decarboxylase complexed with 6-azaUMP
N
RCSB
Y
RCSB
2000-01-20
REL
REL
HOH
water
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
317
2
HOH
HOH
317
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
322
2
HOH
HOH
322
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
326
2
HOH
HOH
326
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
TIP
329
2
HOH
HOH
329
A
TIP
330
2
HOH
HOH
330
A
TIP
331
2
HOH
HOH
331
A
TIP
332
2
HOH
HOH
332
A
TIP
333
2
HOH
HOH
333
A
TIP
334
2
HOH
HOH
334
A
TIP
335
2
HOH
HOH
335
A
TIP
336
2
HOH
HOH
336
A
TIP
337
2
HOH
HOH
337
A
TIP
338
2
HOH
HOH
338
A
TIP
339
2
HOH
HOH
339
A
TIP
340
2
HOH
HOH
340
A
TIP
341
2
HOH
HOH
341
A
TIP
342
2
HOH
HOH
342
A
TIP
343
2
HOH
HOH
343
A
TIP
344
2
HOH
HOH
344
A
TIP
345
2
HOH
HOH
345
A
TIP
346
2
HOH
HOH
346
A
TIP
347
2
HOH
HOH
347
A
TIP
348
2
HOH
HOH
348
A
TIP
349
2
HOH
HOH
349
A
TIP
350
2
HOH
HOH
350
A
TIP
351
2
HOH
HOH
351
A
TIP
352
2
HOH
HOH
352
A
TIP
353
2
HOH
HOH
353
A
TIP
354
2
HOH
HOH
354
A
TIP
355
2
HOH
HOH
355
A
TIP
356
2
HOH
HOH
356
A
TIP
357
2
HOH
HOH
357
A
TIP
358
2
HOH
HOH
358
A
TIP
359
2
HOH
HOH
359
A
TIP
360
2
HOH
HOH
360
A
TIP
361
2
HOH
HOH
361
A
TIP
362
2
HOH
HOH
362
A
TIP
363
2
HOH
HOH
363
A
TIP
364
2
HOH
HOH
364
A
TIP
365
2
HOH
HOH
365
A
TIP
366
2
HOH
HOH
366
A
TIP
367
2
HOH
HOH
367
A
TIP
368
2
HOH
HOH
368
A
TIP
369
2
HOH
HOH
369
A
TIP
370
2
HOH
HOH
370
A
TIP
371
2
HOH
HOH
371
A
TIP
372
2
HOH
HOH
372
A
TIP
373
2
HOH
HOH
373
A
TIP
374
2
HOH
HOH
374
A
TIP
375
2
HOH
HOH
375
A
TIP
376
2
HOH
HOH
376
A
TIP
377
2
HOH
HOH
377
A
TIP
378
2
HOH
HOH
378
A
TIP
379
2
HOH
HOH
379
A
TIP
380
2
HOH
HOH
380
A
TIP
381
2
HOH
HOH
381
A
TIP
382
2
HOH
HOH
382
A
TIP
383
2
HOH
HOH
383
A
TIP
384
2
HOH
HOH
384
A
TIP
385
2
HOH
HOH
385
A
TIP
386
2
HOH
HOH
386
A
TIP
387
2
HOH
HOH
387
A
TIP
388
2
HOH
HOH
388
A
TIP
389
2
HOH
HOH
389
A
TIP
390
2
HOH
HOH
390
A
TIP
391
2
HOH
HOH
391
A
TIP
392
2
HOH
HOH
392
A
TIP
393
2
HOH
HOH
393
A
TIP
394
2
HOH
HOH
394
A
TIP
395
2
HOH
HOH
395
A
TIP
396
2
HOH
HOH
396
A
TIP
397
2
HOH
HOH
397
A
TIP
398
2
HOH
HOH
398
A
TIP
399
2
HOH
HOH
399
A
TIP
400
2
HOH
HOH
400
A
TIP
401
2
HOH
HOH
401
A
TIP
402
2
HOH
HOH
402
A
TIP
403
2
HOH
HOH
403
A
TIP
404
2
HOH
HOH
404
A
TIP
405
2
HOH
HOH
405
A
TIP
406
2
HOH
HOH
406
A
TIP
407
2
HOH
HOH
407
A
TIP
408
2
HOH
HOH
408
A
TIP
409
2
HOH
HOH
409
A
TIP
410
2
HOH
HOH
410
A
TIP
411
2
HOH
HOH
411
A
TIP
412
2
HOH
HOH
412
A
TIP
413
2
HOH
HOH
413
A
TIP
414
2
HOH
HOH
414
A
TIP
415
2
HOH
HOH
415
A
TIP
416
2
HOH
HOH
416
A
TIP
417
2
HOH
HOH
417
A
TIP
418
2
HOH
HOH
418
A
TIP
419
2
HOH
HOH
419
A
TIP
420
2
HOH
HOH
420
A
TIP
421
2
HOH
HOH
421
A
TIP
422
2
HOH
HOH
422
A
TIP
423
2
HOH
HOH
423
A
TIP
424
2
HOH
HOH
424
A
TIP
425
2
HOH
HOH
425
A
TIP
426
2
HOH
HOH
426
A
TIP
427
2
HOH
HOH
427
A
TIP
428
2
HOH
HOH
428
A
TIP
429
2
HOH
HOH
429
A
TIP
430
2
HOH
HOH
430
A
TIP
431
2
HOH
HOH
431
A
TIP
432
2
HOH
HOH
432
A
TIP
433
2
HOH
HOH
433
A
TIP
434
2
HOH
HOH
434
A
TIP
435
2
HOH
HOH
435
A
TIP
436
2
HOH
HOH
436
A
TIP
437
2
HOH
HOH
437
A
TIP
438
2
HOH
HOH
438
A
TIP
439
2
HOH
HOH
439
A
TIP
440
2
HOH
HOH
440
A
TIP
441
2
HOH
HOH
441
A
TIP
442
2
HOH
HOH
442
A
TIP
443
2
HOH
HOH
443
A
TIP
444
2
HOH
HOH
444
A
TIP
445
2
HOH
HOH
445
A
TIP
446
2
HOH
HOH
446
A
TIP
447
2
HOH
HOH
447
A
TIP
448
2
HOH
HOH
448
A
TIP
449
2
HOH
HOH
449
A
TIP
450
2
HOH
HOH
450
A
TIP
451
2
HOH
HOH
451
A
TIP
452
2
HOH
HOH
452
A
TIP
453
2
HOH
HOH
453
A
TIP
454
2
HOH
HOH
454
A
TIP
455
2
HOH
HOH
455
A
TIP
456
2
HOH
HOH
456
A
TIP
457
2
HOH
HOH
457
A
TIP
458
2
HOH
HOH
458
A
TIP
459
2
HOH
HOH
459
A
TIP
460
2
HOH
HOH
460
A
TIP
461
2
HOH
HOH
461
A
TIP
462
2
HOH
HOH
462
A
TIP
463
2
HOH
HOH
463
A
TIP
464
2
HOH
HOH
464
A
TIP
465
2
HOH
HOH
465
A
TIP
466
2
HOH
HOH
466
A
TIP
467
2
HOH
HOH
467
A
TIP
468
2
HOH
HOH
468
A
TIP
469
2
HOH
HOH
469
A
TIP
470
2
HOH
HOH
470
A
TIP
471
2
HOH
HOH
471
A
TIP
472
2
HOH
HOH
472
A
TIP
473
2
HOH
HOH
473
A
TIP
474
2
HOH
HOH
474
A
TIP
475
2
HOH
HOH
475
A
TIP
476
2
HOH
HOH
476
A
TIP
477
2
HOH
HOH
477
A
TIP
478
2
HOH
HOH
478
A
TIP
479
2
HOH
HOH
479
A
TIP
480
2
HOH
HOH
480
A
TIP
481
2
HOH
HOH
481
A
TIP
482
2
HOH
HOH
482
A
TIP
483
2
HOH
HOH
483
A
TIP
484
2
HOH
HOH
484
A
TIP
485
2
HOH
HOH
485
A
TIP
486
2
HOH
HOH
486
A
TIP
487
2
HOH
HOH
487
A
TIP
488
2
HOH
HOH
488
A
TIP
489
2
HOH
HOH
489
A
TIP
490
2
HOH
HOH
490
A
TIP
491
2
HOH
HOH
491
A
TIP
492
2
HOH
HOH
492
A
TIP
493
2
HOH
HOH
493
A
TIP
494
2
HOH
HOH
494
A
TIP
495
2
HOH
HOH
495
A
TIP
496
2
HOH
HOH
496
A
TIP
497
2
HOH
HOH
497
A
TIP
498
2
HOH
HOH
498
A
TIP
499
2
HOH
HOH
499
A
TIP
500
2
HOH
HOH
500
A
TIP
501
2
HOH
HOH
501
A
TIP
502
2
HOH
HOH
502
A
TIP
503
2
HOH
HOH
503
A
TIP
504
2
HOH
HOH
504
A
TIP
505
2
HOH
HOH
505
A
TIP
506
2
HOH
HOH
506
A
TIP
507
2
HOH
HOH
507
A
TIP
508
2
HOH
HOH
508
A
TIP
509
2
HOH
HOH
509
A
TIP
510
2
HOH
HOH
510
A
TIP
511
2
HOH
HOH
511
A
TIP
512
2
HOH
HOH
512
A
TIP
513
2
HOH
HOH
513
A
TIP
514
2
HOH
HOH
514
A
TIP
515
2
HOH
HOH
515
A
TIP
516
2
HOH
HOH
516
A
TIP
517
2
HOH
HOH
517
A
ARG
2
n
1
ARG
2
A
SER
3
n
2
SER
3
A
ALA
4
n
3
ARG
4
A
ARG
5
n
4
ARG
5
A
VAL
6
n
5
VAL
6
A
ASP
7
n
6
ASP
7
A
VAL
8
n
7
VAL
8
A
MET
9
n
8
MET
9
A
ASP
10
n
9
ASP
10
A
VAL
11
n
10
VAL
11
A
MET
12
n
11
MET
12
A
ASN
13
n
12
ASN
13
A
ARG
14
n
13
ARG
14
A
LEU
15
n
14
LEU
15
A
ILE
16
n
15
ILE
16
A
LEU
17
n
16
LEU
17
A
ALA
18
n
17
ALA
18
A
MET
19
n
18
MET
19
A
ASP
20
n
19
ASP
20
A
LEU
21
n
20
LEU
21
A
MET
22
n
21
MET
22
A
ASN
23
n
22
ASN
23
A
ARG
24
n
23
ARG
24
A
ASP
25
n
24
ASP
25
A
ASP
26
n
25
ASP
26
A
ALA
27
n
26
ALA
27
A
LEU
28
n
27
LEU
28
A
ARG
29
n
28
ARG
29
A
VAL
30
n
29
VAL
30
A
THR
31
n
30
THR
31
A
GLY
32
n
31
GLY
32
A
GLU
33
n
32
GLU
33
A
VAL
34
n
33
VAL
34
A
ARG
35
n
34
ARG
35
A
GLU
36
n
35
GLU
36
A
TYR
37
n
36
TYR
37
A
ILE
38
n
37
ILE
38
A
ASP
39
n
38
ASP
39
A
THR
40
n
39
THR
40
A
VAL
41
n
40
VAL
41
A
LYS
42
n
41
LYS
42
A
ILE
43
n
42
ILE
43
A
GLY
44
n
43
GLY
44
A
TYR
45
n
44
TYR
45
A
PRO
46
n
45
PRO
46
A
LEU
47
n
46
LEU
47
A
VAL
48
n
47
VAL
48
A
LEU
49
n
48
LEU
49
A
SER
50
n
49
SER
50
A
GLU
51
n
50
GLU
51
A
GLY
52
n
51
GLY
52
A
MET
53
n
52
MET
53
A
ASP
54
n
53
ASP
54
A
ILE
55
n
54
ILE
55
A
ILE
56
n
55
ILE
56
A
ALA
57
n
56
ALA
57
A
GLU
58
n
57
GLU
58
A
PHE
59
n
58
PHE
59
A
ARG
60
n
59
ARG
60
A
LYS
61
n
60
LYS
61
A
ARG
62
n
61
ARG
62
A
PHE
63
n
62
PHE
63
A
GLY
64
n
63
GLY
64
A
CYS
65
n
64
CYS
65
A
ARG
66
n
65
ARG
66
A
ILE
67
n
66
ILE
67
A
ILE
68
n
67
ILE
68
A
ALA
69
n
68
ALA
69
A
ASP
70
n
69
ASP
70
A
PHE
71
n
70
PHE
71
A
LYS
72
n
71
LYS
72
A
VAL
73
n
72
VAL
73
A
ALA
74
n
73
ALA
74
A
ASP
75
n
74
ASP
75
A
ILE
76
n
75
ILE
76
A
PRO
77
n
76
PRO
77
A
GLU
78
n
77
GLU
78
A
THR
79
n
78
THR
79
A
ASN
80
n
79
ASN
80
A
GLU
81
n
80
GLU
81
A
LYS
82
n
81
LYS
82
A
ILE
83
n
82
ILE
83
A
CYS
84
n
83
CYS
84
A
ARG
85
n
84
ARG
85
A
ALA
86
n
85
ALA
86
A
THR
87
n
86
THR
87
A
PHE
88
n
87
PHE
88
A
LYS
89
n
88
LYS
89
A
ALA
90
n
89
ALA
90
A
GLY
91
n
90
GLY
91
A
ALA
92
n
91
ALA
92
A
ASP
93
n
92
ASP
93
A
ALA
94
n
93
ALA
94
A
ILE
95
n
94
ILE
95
A
ILE
96
n
95
ILE
96
A
VAL
97
n
96
VAL
97
A
HIS
98
n
97
HIS
98
A
GLY
99
n
98
GLY
99
A
PHE
100
n
99
PHE
100
A
PRO
101
n
100
PRO
101
A
GLY
102
n
101
GLY
102
A
ALA
103
n
102
ALA
103
A
ASP
104
n
103
ASP
104
A
SER
105
n
104
SER
105
A
VAL
106
n
105
VAL
106
A
ARG
107
n
106
ARG
107
A
ALA
108
n
107
ALA
108
A
CYS
109
n
108
CYS
109
A
LEU
110
n
109
LEU
110
A
ASN
111
n
110
ASN
111
A
VAL
112
n
111
VAL
112
A
ALA
113
n
112
ALA
113
A
GLU
114
n
113
GLU
114
A
GLU
115
n
114
GLU
115
A
MET
116
n
115
MET
116
A
GLY
117
n
116
GLY
117
A
ARG
118
n
117
ARG
118
A
GLU
119
n
118
GLU
119
A
VAL
120
n
119
VAL
120
A
PHE
121
n
120
PHE
121
A
LEU
122
n
121
LEU
122
A
LEU
123
n
122
LEU
123
A
THR
124
n
123
THR
124
A
GLU
125
n
124
GLU
125
A
MET
126
n
125
MET
126
A
SER
127
n
126
SER
127
A
HIS
128
n
127
HIS
128
A
PRO
129
n
128
PRO
129
A
GLY
130
n
129
GLY
130
A
ALA
131
n
130
ALA
131
A
GLU
132
n
131
GLU
132
A
MET
133
n
132
MET
133
A
PHE
134
n
133
PHE
134
A
ILE
135
n
134
ILE
135
A
GLN
136
n
135
GLN
136
A
GLY
137
n
136
GLY
137
A
ALA
138
n
137
ALA
138
A
ALA
139
n
138
ALA
139
A
ASP
140
n
139
ASP
140
A
GLU
141
n
140
GLU
141
A
ILE
142
n
141
ILE
142
A
ALA
143
n
142
ALA
143
A
ARG
144
n
143
ARG
144
A
MET
145
n
144
MET
145
A
GLY
146
n
145
GLY
146
A
VAL
147
n
146
VAL
147
A
ASP
148
n
147
ASP
148
A
LEU
149
n
148
LEU
149
A
GLY
150
n
149
GLY
150
A
VAL
151
n
150
VAL
151
A
LYS
152
n
151
LYS
152
A
ASN
153
n
152
ASN
153
A
TYR
154
n
153
TYR
154
A
VAL
155
n
154
VAL
155
A
GLY
156
n
155
GLY
156
A
PRO
157
n
156
PRO
157
A
SER
158
n
157
SER
158
A
THR
159
n
158
THR
159
A
ARG
160
n
159
ARG
160
A
PRO
161
n
160
PRO
161
A
GLU
162
n
161
GLU
162
A
ARG
163
n
162
ARG
163
A
LEU
164
n
163
LEU
164
A
SER
165
n
164
SER
165
A
ARG
166
n
165
ARG
166
A
LEU
167
n
166
LEU
167
A
ARG
168
n
167
ARG
168
A
GLU
169
n
168
GLU
169
A
ILE
170
n
169
ILE
170
A
ILE
171
n
170
ILE
171
A
GLY
172
n
171
GLY
172
A
GLN
173
n
172
GLN
173
A
ASP
174
n
173
ASP
174
A
SER
175
n
174
SER
175
A
PHE
176
n
175
PHE
176
A
LEU
177
n
176
LEU
177
A
ILE
178
n
177
ILE
178
A
SER
179
n
178
SER
179
A
PRO
180
n
179
PRO
180
A
GLY
181
n
180
GLY
181
A
n
181
182
A
n
182
183
A
n
183
184
A
n
184
185
A
n
185
186
A
n
186
187
A
n
187
188
A
n
188
189
A
n
189
190
A
GLU
191
n
190
GLU
191
A
THR
192
n
191
THR
192
A
LEU
193
n
192
LEU
193
A
ARG
194
n
193
ARG
194
A
PHE
195
n
194
PHE
195
A
ALA
196
n
195
ALA
196
A
ASP
197
n
196
ASP
197
A
ALA
198
n
197
ALA
198
A
ILE
199
n
198
ILE
199
A
ILE
200
n
199
ILE
200
A
VAL
201
n
200
VAL
201
A
GLY
202
n
201
GLY
202
A
ARG
203
n
202
ARG
203
A
SER
204
n
203
SER
204
A
ILE
205
n
204
ILE
205
A
TYR
206
n
205
TYR
206
A
LEU
207
n
206
LEU
207
A
ALA
208
n
207
ALA
208
A
ASP
209
n
208
ASP
209
A
ASN
210
n
209
ASN
210
A
PRO
211
n
210
PRO
211
A
ALA
212
n
211
ALA
212
A
ALA
213
n
212
ALA
213
A
ALA
214
n
213
ALA
214
A
ALA
215
n
214
ALA
215
A
ALA
216
n
215
ALA
216
A
GLY
217
n
216
GLY
217
A
ILE
218
n
217
ILE
218
A
ILE
219
n
218
ILE
219
A
GLU
220
n
219
GLU
220
A
SER
221
n
220
SER
221
A
ILE
222
n
221
ILE
222
A
n
222
223
A
n
223
224
A
n
224
225
A
n
225
226
A
n
226
227
A
n
227
228
A
author_defined_assembly
2
dimeric
software_defined_assembly
PISA,PQS
2
dimeric
3170
-31
17200
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-y+1/2,x+1/2,z+1/4
crystal symmetry operation
28.4290000000
28.4290000000
31.1190000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_465
y-1,x+1,-z
crystal symmetry operation
-56.8580000000
56.8580000000
0.0000000000
A
N
LEU
17
A
N
LEU
16
A
O
THR
40
A
O
THR
39
A
N
VAL
41
A
N
VAL
40
A
O
ARG
66
A
O
ARG
65
A
N
ALA
69
A
N
ALA
68
A
O
ALA
94
A
O
ALA
93
A
N
ILE
95
A
N
ILE
94
A
O
GLU
119
A
O
GLU
118
A
N
LEU
122
A
N
LEU
121
A
O
ASN
153
A
O
ASN
152
A
N
TYR
154
A
N
TYR
153
A
O
PHE
176
A
O
PHE
175
A
N
SER
179
A
N
SER
178
A
O
ALA
198
A
O
ALA
197
A
O
ILE
199
A
O
ILE
198
A
N
ILE
16
A
N
ILE
15
1
A
CG
ARG
4
A
CG
ARG
3
1
Y
1
A
CD
ARG
4
A
CD
ARG
3
1
Y
1
A
NE
ARG
4
A
NE
ARG
3
1
Y
1
A
CZ
ARG
4
A
CZ
ARG
3
1
Y
1
A
NH1
ARG
4
A
NH1
ARG
3
1
Y
1
A
NH2
ARG
4
A
NH2
ARG
3
1
Y
1
A
VAL
182
A
VAL
181
1
Y
1
A
GLY
183
A
GLY
182
1
Y
1
A
ALA
184
A
ALA
183
1
Y
1
A
GLN
185
A
GLN
184
1
Y
1
A
GLY
186
A
GLY
185
1
Y
1
A
GLY
187
A
GLY
186
1
Y
1
A
ASP
188
A
ASP
187
1
Y
1
A
PRO
189
A
PRO
188
1
Y
1
A
GLY
190
A
GLY
189
1
Y
1
A
LYS
223
A
LYS
222
1
Y
1
A
ASP
224
A
ASP
223
1
Y
1
A
LEU
225
A
LEU
224
1
Y
1
A
LEU
226
A
LEU
225
1
Y
1
A
ASN
227
A
ASN
226
1
Y
1
A
PRO
228
A
PRO
227
1
Y
1
A
LYS
72
37.90
58.09
1
A
ALA
74
-147.40
50.99
1
A
PHE
134
-137.78
-34.17
1
A
THR
159
-154.99
-29.19
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
21.0
-.63
.00
.00
-.44
.00
1.07
0.2220000
.005
0.2000000
0.2000000
0.2000000
1.80
30.00
1980
19510
19510
10.1
99.1
RANDOM
914445.28
.00
1
RESTRAINED
THROUGHOUT
.0
0
CNS_0.5 library
FLAT MODEL
43.05
.3788
.22
.19
5.00
.07
-.03
1.80
30.00
217
1841
0
0
1624
.012
1.5
23.0
1.10
1.20
1.50
1.85
2.00
2.23
2.00
3.26
2.50
0.2390000
.013
0.1980000
1.91
325
2869
6
10.2
99.8
15.0
1.8
30.0
1DV7
20729
20729
0.0400000
1
7.4
99.1
0.0760000
1.8
1.86
1915
1
7
99.7
phasing
SOLVE
refinement
CNS
0.5
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE
1
N
N
2
N
N
The biological assembly is a dimer.
A
VAL
11
A
VAL
10
HELX_P
A
ASN
13
A
ASN
12
5
1
3
A
ASN
23
A
ASN
22
HELX_P
A
VAL
34
A
VAL
33
1
2
12
A
TYR
45
A
TYR
44
HELX_P
A
GLY
52
A
GLY
51
1
3
8
A
MET
53
A
MET
52
HELX_P
A
GLY
64
A
GLY
63
1
4
12
A
ILE
76
A
ILE
75
HELX_P
A
ALA
90
A
ALA
89
1
5
15
A
GLY
102
A
GLY
101
HELX_P
A
GLY
117
A
GLY
116
1
6
16
A
HIS
128
A
HIS
127
HELX_P
A
MET
133
A
MET
132
5
7
6
A
PHE
134
A
PHE
133
HELX_P
A
LEU
149
A
LEU
148
1
8
16
A
ARG
160
A
ARG
159
HELX_P
A
GLY
172
A
GLY
171
1
9
13
A
GLU
191
A
GLU
190
HELX_P
A
PHE
195
A
PHE
194
5
10
5
A
GLY
202
A
GLY
201
HELX_P
A
LEU
207
A
LEU
206
1
11
6
A
ASN
210
A
ASN
209
HELX_P
A
ILE
222
A
ILE
221
1
12
13
LYASE
TIM barrel, dimer, LYASE
PYRF_METTH
UNP
1
O26232
2
228
1DV7
2
228
O26232
A
1
1
227
1
ARG
engineered mutation
PRO
101
1DV7
A
O26232
UNP
101
100
9
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
15
A
LEU
14
A
ALA
18
A
ALA
17
A
THR
40
A
THR
39
A
GLY
44
A
GLY
43
A
ARG
66
A
ARG
65
A
VAL
73
A
VAL
72
A
ALA
94
A
ALA
93
A
HIS
98
A
HIS
97
A
GLU
119
A
GLU
118
A
LEU
123
A
LEU
122
A
ASN
153
A
ASN
152
A
VAL
155
A
VAL
154
A
PHE
176
A
PHE
175
A
PRO
180
A
PRO
179
A
ALA
198
A
ALA
197
A
VAL
201
A
VAL
200
A
LEU
15
A
LEU
14
A
ALA
18
A
ALA
17
92
P 41 21 2