0.019751 0.000000 0.000000 0.000000 0.012262 0.000000 0.000000 0.000000 0.009974 0.000000 0.000000 0.000000 Sieker, L.C. Holmes, M. Le Trong, I. Turley, S. Liu, M.Y. Legall, J. Stenkamp, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 50.630 81.550 100.260 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N FE N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 5 505 513 10.1007/s007750050011 10968622 The 1.9 A crystal structure of the "as isolated" rubrerythrin from Desulfovibrio vulgaris: some surprising results. 2000 10.2210/pdb1dvb/pdb pdb_00001dvb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 298 1 AREA DETECTOR XUONG-HAMLIN MULTIWIRE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 21577.281 RUBRERYTHRIN 1 nat polymer 55.845 FE (III) ION 2 syn non-polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 165 nat water no no MKSLKGSRTEKNILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGII ADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRN CGYVHEGTGAPELCPACAHPKAHFELLGINW MKSLKGSRTEKNILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGII ADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRN CGYVHEGTGAPELCPACAHPKAHFELLGINW A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfovibrio sample 882 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Desulfovibrio vulgaris HILDENBOROUGH 3 2 48.70 VAPOR DIFFUSION 7.5 PEG4000, Tris acid maleate, pH 7.5, VAPOR DIFFUSION, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2000-11-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-01-20 REL REL FE FE (III) ION ZN ZINC ION HOH water 1RYT PDB ID 1RYT PDB experimental model FE 192 2 FE FE 192 A FE 193 2 FE FE 193 A ZN 194 3 ZN ZN 194 A HOH 195 4 HOH HOH 195 A HOH 196 4 HOH HOH 196 A HOH 197 4 HOH HOH 197 A HOH 198 4 HOH HOH 198 A HOH 199 4 HOH HOH 199 A HOH 200 4 HOH HOH 200 A HOH 201 4 HOH HOH 201 A HOH 202 4 HOH HOH 202 A HOH 203 4 HOH HOH 203 A HOH 204 4 HOH HOH 204 A HOH 205 4 HOH HOH 205 A HOH 206 4 HOH HOH 206 A HOH 207 4 HOH HOH 207 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 210 4 HOH HOH 210 A HOH 211 4 HOH HOH 211 A HOH 212 4 HOH HOH 212 A HOH 213 4 HOH HOH 213 A HOH 214 4 HOH HOH 214 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 220 4 HOH HOH 220 A HOH 221 4 HOH HOH 221 A HOH 222 4 HOH HOH 222 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 246 4 HOH HOH 246 A HOH 247 4 HOH HOH 247 A HOH 248 4 HOH HOH 248 A HOH 249 4 HOH HOH 249 A HOH 250 4 HOH HOH 250 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 253 4 HOH HOH 253 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 258 4 HOH HOH 258 A HOH 259 4 HOH HOH 259 A HOH 260 4 HOH HOH 260 A HOH 261 4 HOH HOH 261 A HOH 265 4 HOH HOH 265 A HOH 266 4 HOH HOH 266 A HOH 267 4 HOH HOH 267 A HOH 268 4 HOH HOH 268 A HOH 273 4 HOH HOH 273 A HOH 274 4 HOH HOH 274 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 279 4 HOH HOH 279 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A HOH 283 4 HOH HOH 283 A HOH 285 4 HOH HOH 285 A HOH 287 4 HOH HOH 287 A HOH 288 4 HOH HOH 288 A HOH 289 4 HOH HOH 289 A HOH 293 4 HOH HOH 293 A HOH 294 4 HOH HOH 294 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 298 4 HOH HOH 298 A HOH 299 4 HOH HOH 299 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 387 4 HOH HOH 387 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A SER 3 n 3 SER 3 A LEU 4 n 4 LEU 4 A LYS 5 n 5 LYS 5 A GLY 6 n 6 GLY 6 A SER 7 n 7 SER 7 A ARG 8 n 8 ARG 8 A THR 9 n 9 THR 9 A GLU 10 n 10 GLU 10 A LYS 11 n 11 LYS 11 A ASN 12 n 12 ASN 12 A ILE 13 n 13 ILE 13 A LEU 14 n 14 LEU 14 A THR 15 n 15 THR 15 A ALA 16 n 16 ALA 16 A PHE 17 n 17 PHE 17 A ALA 18 n 18 ALA 18 A GLY 19 n 19 GLY 19 A GLU 20 n 20 GLU 20 A SER 21 n 21 SER 21 A GLN 22 n 22 GLN 22 A ALA 23 n 23 ALA 23 A ARG 24 n 24 ARG 24 A ASN 25 n 25 ASN 25 A ARG 26 n 26 ARG 26 A TYR 27 n 27 TYR 27 A ASN 28 n 28 ASN 28 A TYR 29 n 29 TYR 29 A PHE 30 n 30 PHE 30 A GLY 31 n 31 GLY 31 A GLY 32 n 32 GLY 32 A GLN 33 n 33 GLN 33 A ALA 34 n 34 ALA 34 A LYS 35 n 35 LYS 35 A LYS 36 n 36 LYS 36 A ASP 37 n 37 ASP 37 A GLY 38 n 38 GLY 38 A PHE 39 n 39 PHE 39 A VAL 40 n 40 VAL 40 A GLN 41 n 41 GLN 41 A ILE 42 n 42 ILE 42 A SER 43 n 43 SER 43 A ASP 44 n 44 ASP 44 A ILE 45 n 45 ILE 45 A PHE 46 n 46 PHE 46 A ALA 47 n 47 ALA 47 A GLU 48 n 48 GLU 48 A THR 49 n 49 THR 49 A ALA 50 n 50 ALA 50 A ASP 51 n 51 ASP 51 A GLN 52 n 52 GLN 52 A GLU 53 n 53 GLU 53 A ARG 54 n 54 ARG 54 A GLU 55 n 55 GLU 55 A HIS 56 n 56 HIS 56 A ALA 57 n 57 ALA 57 A LYS 58 n 58 LYS 58 A ARG 59 n 59 ARG 59 A LEU 60 n 60 LEU 60 A PHE 61 n 61 PHE 61 A LYS 62 n 62 LYS 62 A PHE 63 n 63 PHE 63 A LEU 64 n 64 LEU 64 A GLU 65 n 65 GLU 65 A GLY 66 n 66 GLY 66 A GLY 67 n 67 GLY 67 A ASP 68 n 68 ASP 68 A LEU 69 n 69 LEU 69 A GLU 70 n 70 GLU 70 A ILE 71 n 71 ILE 71 A VAL 72 n 72 VAL 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A PHE 75 n 75 PHE 75 A PRO 76 n 76 PRO 76 A ALA 77 n 77 ALA 77 A GLY 78 n 78 GLY 78 A ILE 79 n 79 ILE 79 A ILE 80 n 80 ILE 80 A ALA 81 n 81 ALA 81 A ASP 82 n 82 ASP 82 A THR 83 n 83 THR 83 A HIS 84 n 84 HIS 84 A ALA 85 n 85 ALA 85 A ASN 86 n 86 ASN 86 A LEU 87 n 87 LEU 87 A ILE 88 n 88 ILE 88 A ALA 89 n 89 ALA 89 A SER 90 n 90 SER 90 A ALA 91 n 91 ALA 91 A ALA 92 n 92 ALA 92 A GLY 93 n 93 GLY 93 A GLU 94 n 94 GLU 94 A HIS 95 n 95 HIS 95 A HIS 96 n 96 HIS 96 A GLU 97 n 97 GLU 97 A TYR 98 n 98 TYR 98 A THR 99 n 99 THR 99 A GLU 100 n 100 GLU 100 A MET 101 n 101 MET 101 A TYR 102 n 102 TYR 102 A PRO 103 n 103 PRO 103 A SER 104 n 104 SER 104 A PHE 105 n 105 PHE 105 A ALA 106 n 106 ALA 106 A ARG 107 n 107 ARG 107 A ILE 108 n 108 ILE 108 A ALA 109 n 109 ALA 109 A ARG 110 n 110 ARG 110 A GLU 111 n 111 GLU 111 A GLU 112 n 112 GLU 112 A GLY 113 n 113 GLY 113 A TYR 114 n 114 TYR 114 A GLU 115 n 115 GLU 115 A GLU 116 n 116 GLU 116 A ILE 117 n 117 ILE 117 A ALA 118 n 118 ALA 118 A ARG 119 n 119 ARG 119 A VAL 120 n 120 VAL 120 A PHE 121 n 121 PHE 121 A ALA 122 n 122 ALA 122 A SER 123 n 123 SER 123 A ILE 124 n 124 ILE 124 A ALA 125 n 125 ALA 125 A VAL 126 n 126 VAL 126 A ALA 127 n 127 ALA 127 A GLU 128 n 128 GLU 128 A GLU 129 n 129 GLU 129 A PHE 130 n 130 PHE 130 A HIS 131 n 131 HIS 131 A GLU 132 n 132 GLU 132 A LYS 133 n 133 LYS 133 A ARG 134 n 134 ARG 134 A PHE 135 n 135 PHE 135 A LEU 136 n 136 LEU 136 A ASP 137 n 137 ASP 137 A PHE 138 n 138 PHE 138 A ALA 139 n 139 ALA 139 A ARG 140 n 140 ARG 140 A ASN 141 n 141 ASN 141 A ILE 142 n 142 ILE 142 A LYS 143 n 143 LYS 143 A GLU 144 n 144 GLU 144 A GLY 145 n 145 GLY 145 A ARG 146 n 146 ARG 146 A VAL 147 n 147 VAL 147 A PHE 148 n 148 PHE 148 A LEU 149 n 149 LEU 149 A ARG 150 n 150 ARG 150 A GLU 151 n 151 GLU 151 A GLN 152 n 152 GLN 152 A ALA 153 n 153 ALA 153 A THR 154 n 154 THR 154 A LYS 155 n 155 LYS 155 A TRP 156 n 156 TRP 156 A ARG 157 n 157 ARG 157 A CYS 158 n 158 CYS 158 A ARG 159 n 159 ARG 159 A ASN 160 n 160 ASN 160 A CYS 161 n 161 CYS 161 A GLY 162 n 162 GLY 162 A TYR 163 n 163 TYR 163 A VAL 164 n 164 VAL 164 A HIS 165 n 165 HIS 165 A GLU 166 n 166 GLU 166 A GLY 167 n 167 GLY 167 A THR 168 n 168 THR 168 A GLY 169 n 169 GLY 169 A ALA 170 n 170 ALA 170 A PRO 171 n 171 PRO 171 A GLU 172 n 172 GLU 172 A LEU 173 n 173 LEU 173 A CYS 174 n 174 CYS 174 A PRO 175 n 175 PRO 175 A ALA 176 n 176 ALA 176 A CYS 177 n 177 CYS 177 A ALA 178 n 178 ALA 178 A HIS 179 n 179 HIS 179 A PRO 180 n 180 PRO 180 A LYS 181 n 181 LYS 181 A ALA 182 n 182 ALA 182 A HIS 183 n 183 HIS 183 A PHE 184 n 184 PHE 184 A GLU 185 n 185 GLU 185 A LEU 186 n 186 LEU 186 A LEU 187 n 187 LEU 187 A GLY 188 n 188 GLY 188 A ILE 189 n 189 ILE 189 A ASN 190 n 190 ASN 190 A TRP 191 n 191 TRP 191 A 0.1770000 0.1970000 0.1760000 0.1990000 0.2530000 0.2700000 60 77 5.0 5.0 1155 author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA,PQS 4 tetrameric 3460 -60 18100 12730 -156 30400 A GLU 20 A OE2 GLU 20 1_555 A ZN 194 D ZN ZN 1_555 A GLU 53 A OE1 GLU 53 1_555 107.8 A GLU 20 A OE2 GLU 20 1_555 A ZN 194 D ZN ZN 1_555 A HIS 56 A ND1 HIS 56 1_555 96.5 A GLU 53 A OE1 GLU 53 1_555 A ZN 194 D ZN ZN 1_555 A HIS 56 A ND1 HIS 56 1_555 119.0 A GLU 20 A OE2 GLU 20 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE2 GLU 128 1_555 88.4 A GLU 53 A OE1 GLU 53 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE2 GLU 128 1_555 116.3 A HIS 56 A ND1 HIS 56 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE2 GLU 128 1_555 119.6 A GLU 20 A OE2 GLU 20 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE1 GLU 128 1_555 139.5 A GLU 53 A OE1 GLU 53 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE1 GLU 128 1_555 99.0 A HIS 56 A ND1 HIS 56 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE1 GLU 128 1_555 96.3 A GLU 128 A OE2 GLU 128 1_555 A ZN 194 D ZN ZN 1_555 A GLU 128 A OE1 GLU 128 1_555 52.1 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 A GLU 94 A OE1 GLU 94 1_555 152.4 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 A GLU 94 A OE2 GLU 94 1_555 98.5 A GLU 94 A OE1 GLU 94 1_555 A FE 193 C FE FE 1_555 A GLU 94 A OE2 GLU 94 1_555 59.3 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 A GLU 128 A OE1 GLU 128 1_555 101.5 A GLU 94 A OE1 GLU 94 1_555 A FE 193 C FE FE 1_555 A GLU 128 A OE1 GLU 128 1_555 98.0 A GLU 94 A OE2 GLU 94 1_555 A FE 193 C FE FE 1_555 A GLU 128 A OE1 GLU 128 1_555 156.7 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 A HIS 131 A ND1 HIS 131 1_555 92.1 A GLU 94 A OE1 GLU 94 1_555 A FE 193 C FE FE 1_555 A HIS 131 A ND1 HIS 131 1_555 109.1 A GLU 94 A OE2 GLU 94 1_555 A FE 193 C FE FE 1_555 A HIS 131 A ND1 HIS 131 1_555 106.6 A GLU 128 A OE1 GLU 128 1_555 A FE 193 C FE FE 1_555 A HIS 131 A ND1 HIS 131 1_555 84.7 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 75.0 A GLU 94 A OE1 GLU 94 1_555 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 84.3 A GLU 94 A OE2 GLU 94 1_555 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 79.6 A GLU 128 A OE1 GLU 128 1_555 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 94.0 A HIS 131 A ND1 HIS 131 1_555 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 166.6 A CYS 158 A SG CYS 158 1_555 A FE 192 B FE FE 1_555 A CYS 161 A SG CYS 161 1_555 111.0 A CYS 158 A SG CYS 158 1_555 A FE 192 B FE FE 1_555 A CYS 174 A SG CYS 174 1_555 110.1 A CYS 161 A SG CYS 161 1_555 A FE 192 B FE FE 1_555 A CYS 174 A SG CYS 174 1_555 106.3 A CYS 158 A SG CYS 158 1_555 A FE 192 B FE FE 1_555 A CYS 177 A SG CYS 177 1_555 104.3 A CYS 161 A SG CYS 161 1_555 A FE 192 B FE FE 1_555 A CYS 177 A SG CYS 177 1_555 116.7 A CYS 174 A SG CYS 174 1_555 A FE 192 B FE FE 1_555 A CYS 177 A SG CYS 177 1_555 108.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 x,-y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O THR 168 A O THR 168 A N ARG 150 A N ARG 150 A N ARG 157 A N ARG 157 A O GLU 185 A O GLU 185 1 A HOH 313 E HOH 1 -3.67 0.50 120.30 116.63 A A A NE CZ NH2 ARG ARG ARG 24 24 24 N 1 3.40 0.50 120.30 123.70 A A A NE CZ NH1 ARG ARG ARG 26 26 26 N 1 7.06 0.90 118.30 125.36 A A A CB CG OD2 ASP ASP ASP 37 37 37 N 1 7.88 0.90 118.30 126.18 A A A CB CG OD1 ASP ASP ASP 51 51 51 N 1 -10.28 1.20 123.30 113.02 A A A OE1 CD OE2 GLU GLU GLU 53 53 53 N 1 14.31 1.40 123.60 137.91 A A A CD NE CZ ARG ARG ARG 59 59 59 A A A N 1 -15.87 1.20 123.30 107.43 A A A OE1 CD OE2 GLU GLU GLU 94 94 94 N 1 13.48 1.40 123.60 137.08 A A A CD NE CZ ARG ARG ARG 107 107 107 N 1 10.35 1.40 123.60 133.95 A A A CD NE CZ ARG ARG ARG 110 110 110 A A A N 1 3.52 0.50 120.30 123.82 A A A NE CZ NH1 ARG ARG ARG 110 110 110 A A A N 1 11.89 1.40 123.60 135.49 A A A CD NE CZ ARG ARG ARG 119 119 119 N 1 4.08 0.50 120.30 124.38 A A A NE CZ NH1 ARG ARG ARG 119 119 119 N 1 -10.69 1.40 123.60 112.91 A A A CD NE CZ ARG ARG ARG 134 134 134 N 1 -3.08 0.50 120.30 117.22 A A A NE CZ NH1 ARG ARG ARG 134 134 134 N 1 6.27 0.50 120.30 126.57 A A A NE CZ NH2 ARG ARG ARG 134 134 134 N 1 21.75 1.40 123.60 145.35 A A A CD NE CZ ARG ARG ARG 140 140 140 A A A N 1 3.36 0.50 120.30 123.66 A A A NE CZ NH1 ARG ARG ARG 140 140 140 A A A N 1 3.06 0.50 120.30 123.36 A A A NE CZ NH1 ARG ARG ARG 140 140 140 B B B N 1 -15.45 1.40 123.60 108.15 A A A CD NE CZ ARG ARG ARG 159 159 159 N 1 -9.21 0.50 120.30 111.09 A A A NE CZ NH1 ARG ARG ARG 159 159 159 N 1 5.12 0.50 120.30 125.42 A A A NE CZ NH2 ARG ARG ARG 159 159 159 N 1 A LYS 2 -85.33 -126.36 1 A ALA 77 -101.80 78.86 1 A ALA 81 -116.95 -163.47 1 A ASN 190 -148.93 54.31 0.2550000 0.1760000 0.1970000 0.1760000 1.9 20.0 696 771 15420 11533 652 5.0 83 RANDOM 1 FREE R 4 2 COORDINATES FROM PDB PDB ID 1RYT Engh & Huber 1 0.0 1652.0 1.9 20.0 165 1690 3 0 1522 0.01 0.04 0.00 0.020 0.02 0.03 0.01 0.00 0.05 0.00 1.9 20.0 1DVB 226047 15420 4 2 0.0930000 1 87.6 1.88 2.02 1 phasing SHELXS refinement SHELXL-97 RUBRERYTHRIN 1 N N 2 N N 2 N N 3 N N 4 N N A SER 7 A SER 7 HELX_P A GLY 38 A GLY 38 1 1 32 A PHE 39 A PHE 39 HELX_P A LYS 62 A LYS 62 1 2 24 A ASP 82 A ASP 82 HELX_P A GLU 100 A GLU 100 1 3 19 A GLU 100 A GLU 100 HELX_P A GLU 112 A GLU 112 1 4 13 A TYR 114 A TYR 114 HELX_P A GLU 144 A GLU 144 1 5 31 metalc 2.098 A GLU 20 A OE2 GLU 20 1_555 A ZN 194 D ZN ZN 1_555 metalc 2.057 A GLU 53 A OE2 GLU 53 1_555 A FE 193 C FE FE 1_555 metalc 2.110 A GLU 53 A OE1 GLU 53 1_555 A ZN 194 D ZN ZN 1_555 metalc 2.195 A HIS 56 A ND1 HIS 56 1_555 A ZN 194 D ZN ZN 1_555 metalc 2.059 A GLU 94 A OE1 GLU 94 1_555 A FE 193 C FE FE 1_555 metalc 2.037 A GLU 94 A OE2 GLU 94 1_555 A FE 193 C FE FE 1_555 metalc 2.019 A GLU 128 A OE1 GLU 128 1_555 A FE 193 C FE FE 1_555 metalc 2.089 A GLU 128 A OE2 GLU 128 1_555 A ZN 194 D ZN ZN 1_555 metalc 2.763 A GLU 128 A OE1 GLU 128 1_555 A ZN 194 D ZN ZN 1_555 metalc 2.170 A HIS 131 A ND1 HIS 131 1_555 A FE 193 C FE FE 1_555 metalc 2.292 A CYS 158 A SG CYS 158 1_555 A FE 192 B FE FE 1_555 metalc 2.229 A CYS 161 A SG CYS 161 1_555 A FE 192 B FE FE 1_555 metalc 2.304 A CYS 174 A SG CYS 174 1_555 A FE 192 B FE FE 1_555 metalc 2.342 A CYS 177 A SG CYS 177 1_555 A FE 192 B FE FE 1_555 metalc 2.201 A FE 193 C FE FE 1_555 A HOH 196 E O HOH 1_555 ELECTRON TRANSPORT IRON, FERROXIDASE, ELECTRON TRANSPORT A GLY 78 A GLY 78 1 A ILE 79 A ILE 79 0.28 RUBY_DESVH UNP 1 P24931 1 191 1DVB 1 191 P24931 A 1 1 191 3 anti-parallel anti-parallel A VAL 164 A VAL 164 A GLY 169 A GLY 169 A LEU 149 A LEU 149 A CYS 158 A CYS 158 A PHE 184 A PHE 184 A LEU 186 A LEU 186 BINDING SITE FOR RESIDUE FE A 192 A FE 192 Software 4 BINDING SITE FOR RESIDUE FE A 193 A FE 193 Software 6 BINDING SITE FOR RESIDUE ZN A 194 A ZN 194 Software 5 A CYS 158 A CYS 158 4 1_555 A CYS 161 A CYS 161 4 1_555 A CYS 174 A CYS 174 4 1_555 A CYS 177 A CYS 177 4 1_555 A GLU 53 A GLU 53 6 1_555 A GLU 94 A GLU 94 6 1_555 A GLU 128 A GLU 128 6 1_555 A HIS 131 A HIS 131 6 1_555 A ZN 194 D ZN 6 1_555 A HOH 196 E HOH 6 1_555 A GLU 20 A GLU 20 5 1_555 A GLU 53 A GLU 53 5 1_555 A HIS 56 A HIS 56 5 1_555 A GLU 128 A GLU 128 5 1_555 A FE 193 C FE 5 1_555 23 I 2 2 2