1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lopez-Garcia, F. Zahn, R. Riek, R. Billeter, M. Wuthrich, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 8334 10.1073/PNAS.97.15.8334 10899999 NMR Structure of the Bovine Prion Protein 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13111.546 PRION PROTEIN RESIDUES 121-230 YES 1 man polymer PRP, MAJOR PRION PROTEIN no no GSVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSNQNNFVHDCVNITVKEHTVTTTTKGENF TETDIKMMERVVEQMCITQYQRESQAYYQRGA GSVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSNQNNFVHDCVNITVKEHTVTTTTKGENF TETDIKMMERVVEQMCITQYQRESQAYYQRGA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n BOVINE sample EXTRACELLULAR PRNP 9913 BRAIN BOS TAURUS CYTOPLASM 469008 ESCHERICHIA COLI BL21(DE3) PRSET A repository Initial release Version format compliance Version format compliance 1 0 2000-07-20 1 1 2011-05-07 1 2 2011-07-13 BOVINE PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES MINIMIZED STRUCTURE BOVINE PRION PROTEIN NMR, REPRESENTATIVE MINIMIZED STRUCTURE BOVINE PRION PROTEIN NMR, 20 STRUCTURES PRION PROTEIN DOMAIN PRP(121-231) FROM MOUSE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231), 25 STRUCTURES HUMAN PRION PROTEIN RESIDUES 23-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, 20 STRUCTURES HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES PDBE Y PDBE 1999-12-15 REL THE PDB ENTRIES 1DWY, 1DWZ, 1DX0 AND 1DX1 FORM A SET OF STRUCTURE DETERMINATIONS AS: 1DWY THE MINIMIZED CONFORMER CLOSEST TO THE MEAN OF THE FRAGMENT BPRP(121-230) (ONLY SUBMITTED RESIDUES 124-227) 1DWZ 20 MINIMIZED CONFORMERS OF THE FRAGMENT BPRP(121-230) (ONLY SUBMITTED RESIDUES 124-227) 1DX0 THE MINIMIZED CONFORMER CLOSEST TO THE MEAN OF THE FULL LENGTH BPRP(23-230) (ONLY SUBMITTED RESIDUES 124-227) 1DX1 20 MINIMIZED CONFORMERS OF THE FULL LENGTH BPRP(23-230) (ONLY SUBMITTED RESIDUES 124-227) THE SEQUENCE NUMBERING GIVEN IN THESE ENTRIES IS THAT FOR HUMAN PRION PROTEIN (RATHER THAN SEQUENTIAL) BASED ON SEQUENCE ALIGNMENT. RESIDUES (GLY SER) INSERTED AT THE N-TERMINUS GLY A 119 CLONING ARTIFACT SER A 120 CLONING ARTIFACT CLOSEST TO THE MEAN (BACKBONE HEAVY ATOMS OF RESIDUES 125-227). THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN LEAST RESTRAINT VIOLATION 50 1 NOESY COSY 0.01 4.5 pH 1 atm 293 K torsion angle dynamics 90% WATER/10% D2O KORADI, BILLETER,GUNTERT refinement OPALP structure solution DYANA 750 Bruker DRX n 1 119 A n 2 120 A n 3 121 A n 4 122 A n 5 123 A GLY 124 n 6 GLY 124 A LEU 125 n 7 LEU 125 A GLY 126 n 8 GLY 126 A GLY 127 n 9 GLY 127 A TYR 128 n 10 TYR 128 A MET 129 n 11 MET 129 A LEU 130 n 12 LEU 130 A GLY 131 n 13 GLY 131 A SER 132 n 14 SER 132 A ALA 133 n 15 ALA 133 A MET 134 n 16 MET 134 A SER 135 n 17 SER 135 A ARG 136 n 18 ARG 136 A PRO 137 n 19 PRO 137 A LEU 138 n 20 LEU 138 A ILE 139 n 21 ILE 139 A HIS 140 n 22 HIS 140 A PHE 141 n 23 PHE 141 A GLY 142 n 24 GLY 142 A SER 143 n 25 SER 143 A ASP 144 n 26 ASP 144 A TYR 145 n 27 TYR 145 A GLU 146 n 28 GLU 146 A ASP 147 n 29 ASP 147 A ARG 148 n 30 ARG 148 A TYR 149 n 31 TYR 149 A TYR 150 n 32 TYR 150 A ARG 151 n 33 ARG 151 A GLU 152 n 34 GLU 152 A ASN 153 n 35 ASN 153 A MET 154 n 36 MET 154 A HIS 155 n 37 HIS 155 A ARG 156 n 38 ARG 156 A TYR 157 n 39 TYR 157 A PRO 158 n 40 PRO 158 A ASN 159 n 41 ASN 159 A GLN 160 n 42 GLN 160 A VAL 161 n 43 VAL 161 A TYR 162 n 44 TYR 162 A TYR 163 n 45 TYR 163 A ARG 164 n 46 ARG 164 A PRO 165 n 47 PRO 165 A VAL 166 n 48 VAL 166 A ASP 167 n 49 ASP 167 A GLN 168 n 50 GLN 168 A TYR 169 n 51 TYR 169 A SER 170 n 52 SER 170 A ASN 171 n 53 ASN 171 A GLN 172 n 54 GLN 172 A ASN 173 n 55 ASN 173 A ASN 174 n 56 ASN 174 A PHE 175 n 57 PHE 175 A VAL 176 n 58 VAL 176 A HIS 177 n 59 HIS 177 A ASP 178 n 60 ASP 178 A CYS 179 n 61 CYS 179 A VAL 180 n 62 VAL 180 A ASN 181 n 63 ASN 181 A ILE 182 n 64 ILE 182 A THR 183 n 65 THR 183 A VAL 184 n 66 VAL 184 A LYS 185 n 67 LYS 185 A GLU 186 n 68 GLU 186 A HIS 187 n 69 HIS 187 A THR 188 n 70 THR 188 A VAL 189 n 71 VAL 189 A THR 190 n 72 THR 190 A THR 191 n 73 THR 191 A THR 192 n 74 THR 192 A THR 193 n 75 THR 193 A LYS 194 n 76 LYS 194 A GLY 195 n 77 GLY 195 A GLU 196 n 78 GLU 196 A ASN 197 n 79 ASN 197 A PHE 198 n 80 PHE 198 A THR 199 n 81 THR 199 A GLU 200 n 82 GLU 200 A THR 201 n 83 THR 201 A ASP 202 n 84 ASP 202 A ILE 203 n 85 ILE 203 A LYS 204 n 86 LYS 204 A MET 205 n 87 MET 205 A MET 206 n 88 MET 206 A GLU 207 n 89 GLU 207 A ARG 208 n 90 ARG 208 A VAL 209 n 91 VAL 209 A VAL 210 n 92 VAL 210 A GLU 211 n 93 GLU 211 A GLN 212 n 94 GLN 212 A MET 213 n 95 MET 213 A CYS 214 n 96 CYS 214 A ILE 215 n 97 ILE 215 A THR 216 n 98 THR 216 A GLN 217 n 99 GLN 217 A TYR 218 n 100 TYR 218 A GLN 219 n 101 GLN 219 A ARG 220 n 102 ARG 220 A GLU 221 n 103 GLU 221 A SER 222 n 104 SER 222 A GLN 223 n 105 GLN 223 A ALA 224 n 106 ALA 224 A TYR 225 n 107 TYR 225 A TYR 226 n 108 TYR 226 A GLN 227 n 109 GLN 227 A n 110 228 A n 111 229 A n 112 230 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 129 A N MET 11 A O TYR 163 A O TYR 45 1 A GLY 119 A GLY 1 1 Y 1 A SER 120 A SER 2 1 Y 1 A VAL 121 A VAL 3 1 Y 1 A VAL 122 A VAL 4 1 Y 1 A GLY 123 A GLY 5 1 Y 1 A ARG 228 A ARG 110 1 Y 1 A GLY 229 A GLY 111 1 Y 1 A ALA 230 A ALA 112 1 Y 1 A ARG 151 0.099 SIDE CHAIN 1 A TYR 163 0.097 SIDE CHAIN 1 A PHE 141 -138.22 -40.49 1 A GLN 168 71.41 -20.26 PRION PROTEIN MINIMIZED AVERAGE Bovine prion protein fragment 121-230 1 N N A ASP 144 A ASP 26 HELX_P A GLU 152 A GLU 34 1 H1 9 A ASN 173 A ASN 55 HELX_P A THR 192 A THR 74 1 H2 20 A GLU 200 A GLU 82 HELX_P A TYR 225 A TYR 107 1 H3 26 disulf 2.012 A CYS 179 A SG CYS 61 1_555 A CYS 214 A SG CYS 96 1_555 PRION PROTEIN PRION PROTEIN, PRION, BRAIN 1DWY PDB 1 1DWY PRIO_BOVIN UNP 1 P10279 119 120 1DWY 119 120 1DWY A 1 1 2 132 241 1DWY 121 230 P10279 A 2 3 112 2 anti-parallel A TYR 128 A TYR 10 A GLY 131 A GLY 13 A VAL 161 A VAL 43 A ARG 164 A ARG 46 1 P 1