1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lopez-Garcia, F. Zahn, R. Riek, R. Billeter, M. Wuthrich, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 8334 10.1073/PNAS.97.15.8334 10899999 NMR Structure of the Bovine Prion Protein 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 23645.928 PRION PROTEIN RESIDUES 23-230 YES 1 man polymer PRP, MAJOR PRION PROTEIN no no GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWG QGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN QNNFVHDCVNITVKEHTVTTTTKGENFTETDIKMMERVVEQMCITQYQRESQAYYQRGA GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWG QGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN QNNFVHDCVNITVKEHTVTTTTKGENFTETDIKMMERVVEQMCITQYQRESQAYYQRGA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n BOVINE sample EXTRACELLULAR PRNP 9913 BRAIN BOS TAURUS CYTOPLASM 469008 ESCHERICHIA COLI BL21(DE3) PRSET A repository Initial release Version format compliance Version format compliance 1 0 2000-07-20 1 1 2011-05-07 1 2 2011-07-13 BOVINE PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES BOVINE PRION PROTEIN FRAGMENT 121-230 NMR,REPRESENTATIVE MINIMIZED STRUCTURE BOVINE PRION PROTEIN NMR, 20 STRUCTURES PRION PROTEIN DOMAIN PRP(121-231) FROM MOUSE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231), 25 STRUCTURES HUMAN PRION PROTEIN RESIDUES 23-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, 20 STRUCTURES HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, REPRESENTATIVE STRUCTURE HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES PDBE Y PDBE 1999-12-15 REL THE PDB ENTRIES 1DWY, 1DWZ, 1DX0 AND 1DX1 FORM A SET OF STRUCTURE DETERMINATIONS AS: 1DWY THE MINIMIZED CONFORMER CLOSEST TO THE MEAN OF THE FRAGMENT BPRP(121-230) (ONLY SUBMITTED RESIDUES 124-227) 1DWZ 20 MINIMIZED CONFORMERS OF THE FRAGMENT BPRP(121-230) (ONLY SUBMITTED RESIDUES 124-227) 1DX0 THE MINIMIZED CONFORMER CLOSEST TO THE MEAN OF THE FULL LENGTH BPRP(23-230) (ONLY SUBMITTED RESIDUES 124-227) 1DX1 20 MINIMIZED CONFORMERS OF THE FULL LENGTH BPRP(23-230) (ONLY SUBMITTED RESIDUES 124-227) THE SEQUENCE NUMBERING GIVEN IN THESE ENTRIES IS THAT FOR HUMAN PRION PROTEIN (RATHER THAN SEQUENTIAL) BASED ON SEQUENCE ALIGNMENT. RESIDUES (GLY SER) INSERTED AT THE N-TERMINUS GLY A 21 CLONING ARTIFACT SER A 22 CLONING ARTIFACT CLOSEST TO THE MEAN (BACKBONE HEAVY ATOMS OF RESIDUES 125-227). THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN LEAST RESTRAINT VIOLATION 50 1 NOESY COSY 0.01 4.5 pH 1 atm 293 K torsion angle dynamics 90% WATER/10% D2O KORADI, BILLETER,GUNTERT refinement OPALP structure solution DYANA 750 Bruker DRX n 1 21 A n 2 22 A n 3 23 A n 4 24 A n 5 25 A n 6 26 A n 7 27 A n 8 28 A n 9 1 281 A n 10 29 A n 11 30 A n 12 31 A n 13 32 A n 14 33 A n 15 34 A n 16 35 A n 17 36 A n 18 37 A n 19 38 A n 20 39 A n 21 40 A n 22 41 A n 23 42 A n 24 43 A n 25 44 A n 26 45 A n 27 46 A n 28 47 A n 29 48 A n 30 49 A n 31 50 A n 32 51 A n 33 52 A n 34 53 A n 35 54 A n 36 55 A n 37 56 A n 38 57 A n 39 58 A n 40 59 A n 41 60 A n 42 61 A n 43 62 A n 44 63 A n 45 64 A n 46 65 A n 47 66 A n 48 67 A n 49 1 671 A n 50 2 672 A n 51 3 673 A n 52 4 674 A n 53 5 675 A n 54 6 67 A n 55 7 67 A n 56 8 678 A n 57 68 A n 58 69 A n 59 70 A n 60 71 A n 61 72 A n 62 73 A n 63 74 A n 64 75 A n 65 76 A n 66 77 A n 67 78 A n 68 79 A n 69 80 A n 70 81 A n 71 82 A n 72 83 A n 73 84 A n 74 85 A n 75 86 A n 76 87 A n 77 1 871 A n 78 88 A n 79 89 A n 80 90 A n 81 91 A n 82 92 A n 83 93 A n 84 95 A n 85 96 A n 86 97 A n 87 98 A n 88 99 A n 89 100 A n 90 101 A n 91 102 A n 92 103 A n 93 104 A n 94 105 A n 95 106 A n 96 107 A n 97 108 A n 98 109 A n 99 110 A n 100 111 A n 101 112 A n 102 113 A n 103 114 A n 104 115 A n 105 116 A n 106 117 A n 107 118 A n 108 119 A n 109 120 A n 110 121 A n 111 122 A n 112 123 A GLY 124 n 113 GLY 124 A LEU 125 n 114 LEU 125 A GLY 126 n 115 GLY 126 A GLY 127 n 116 GLY 127 A TYR 128 n 117 TYR 128 A MET 129 n 118 MET 129 A LEU 130 n 119 LEU 130 A GLY 131 n 120 GLY 131 A SER 132 n 121 SER 132 A ALA 133 n 122 ALA 133 A MET 134 n 123 MET 134 A SER 135 n 124 SER 135 A ARG 136 n 125 ARG 136 A PRO 137 n 126 PRO 137 A LEU 138 n 127 LEU 138 A ILE 139 n 128 ILE 139 A HIS 140 n 129 HIS 140 A PHE 141 n 130 PHE 141 A GLY 142 n 131 GLY 142 A SER 143 n 132 SER 143 A ASP 144 n 133 ASP 144 A TYR 145 n 134 TYR 145 A GLU 146 n 135 GLU 146 A ASP 147 n 136 ASP 147 A ARG 148 n 137 ARG 148 A TYR 149 n 138 TYR 149 A TYR 150 n 139 TYR 150 A ARG 151 n 140 ARG 151 A GLU 152 n 141 GLU 152 A ASN 153 n 142 ASN 153 A MET 154 n 143 MET 154 A HIS 155 n 144 HIS 155 A ARG 156 n 145 ARG 156 A TYR 157 n 146 TYR 157 A PRO 158 n 147 PRO 158 A ASN 159 n 148 ASN 159 A GLN 160 n 149 GLN 160 A VAL 161 n 150 VAL 161 A TYR 162 n 151 TYR 162 A TYR 163 n 152 TYR 163 A ARG 164 n 153 ARG 164 A PRO 165 n 154 PRO 165 A VAL 166 n 155 VAL 166 A ASP 167 n 156 ASP 167 A GLN 168 n 157 GLN 168 A TYR 169 n 158 TYR 169 A SER 170 n 159 SER 170 A ASN 171 n 160 ASN 171 A GLN 172 n 161 GLN 172 A ASN 173 n 162 ASN 173 A ASN 174 n 163 ASN 174 A PHE 175 n 164 PHE 175 A VAL 176 n 165 VAL 176 A HIS 177 n 166 HIS 177 A ASP 178 n 167 ASP 178 A CYS 179 n 168 CYS 179 A VAL 180 n 169 VAL 180 A ASN 181 n 170 ASN 181 A ILE 182 n 171 ILE 182 A THR 183 n 172 THR 183 A VAL 184 n 173 VAL 184 A LYS 185 n 174 LYS 185 A GLU 186 n 175 GLU 186 A HIS 187 n 176 HIS 187 A THR 188 n 177 THR 188 A VAL 189 n 178 VAL 189 A THR 190 n 179 THR 190 A THR 191 n 180 THR 191 A THR 192 n 181 THR 192 A THR 193 n 182 THR 193 A LYS 194 n 183 LYS 194 A GLY 195 n 184 GLY 195 A GLU 196 n 185 GLU 196 A ASN 197 n 186 ASN 197 A PHE 198 n 187 PHE 198 A THR 199 n 188 THR 199 A GLU 200 n 189 GLU 200 A THR 201 n 190 THR 201 A ASP 202 n 191 ASP 202 A ILE 203 n 192 ILE 203 A LYS 204 n 193 LYS 204 A MET 205 n 194 MET 205 A MET 206 n 195 MET 206 A GLU 207 n 196 GLU 207 A ARG 208 n 197 ARG 208 A VAL 209 n 198 VAL 209 A VAL 210 n 199 VAL 210 A GLU 211 n 200 GLU 211 A GLN 212 n 201 GLN 212 A MET 213 n 202 MET 213 A CYS 214 n 203 CYS 214 A ILE 215 n 204 ILE 215 A THR 216 n 205 THR 216 A GLN 217 n 206 GLN 217 A TYR 218 n 207 TYR 218 A GLN 219 n 208 GLN 219 A ARG 220 n 209 ARG 220 A GLU 221 n 210 GLU 221 A SER 222 n 211 SER 222 A GLN 223 n 212 GLN 223 A ALA 224 n 213 ALA 224 A TYR 225 n 214 TYR 225 A TYR 226 n 215 TYR 226 A GLN 227 n 216 GLN 227 A n 217 228 A n 218 229 A n 219 230 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 129 A N MET 118 A O TYR 163 A O TYR 152 1 A GLY 21 A GLY 1 1 Y 1 A SER 22 A SER 2 1 Y 1 A LYS 23 A LYS 3 1 Y 1 A LYS 24 A LYS 4 1 Y 1 A ARG 25 A ARG 5 1 Y 1 A PRO 26 A PRO 6 1 Y 1 A LYS 27 A LYS 7 1 Y 1 A PRO 28 A PRO 8 1 Y 1 1 A GLY 281 A GLY 9 1 Y 1 A GLY 29 A GLY 10 1 Y 1 A GLY 30 A GLY 11 1 Y 1 A TRP 31 A TRP 12 1 Y 1 A ASN 32 A ASN 13 1 Y 1 A THR 33 A THR 14 1 Y 1 A GLY 34 A GLY 15 1 Y 1 A GLY 35 A GLY 16 1 Y 1 A SER 36 A SER 17 1 Y 1 A ARG 37 A ARG 18 1 Y 1 A TYR 38 A TYR 19 1 Y 1 A PRO 39 A PRO 20 1 Y 1 A GLY 40 A GLY 21 1 Y 1 A GLN 41 A GLN 22 1 Y 1 A GLY 42 A GLY 23 1 Y 1 A SER 43 A SER 24 1 Y 1 A PRO 44 A PRO 25 1 Y 1 A GLY 45 A GLY 26 1 Y 1 A GLY 46 A GLY 27 1 Y 1 A ASN 47 A ASN 28 1 Y 1 A ARG 48 A ARG 29 1 Y 1 A TYR 49 A TYR 30 1 Y 1 A PRO 50 A PRO 31 1 Y 1 A PRO 51 A PRO 32 1 Y 1 A GLN 52 A GLN 33 1 Y 1 A GLY 53 A GLY 34 1 Y 1 A GLY 54 A GLY 35 1 Y 1 A GLY 55 A GLY 36 1 Y 1 A GLY 56 A GLY 37 1 Y 1 A TRP 57 A TRP 38 1 Y 1 A GLY 58 A GLY 39 1 Y 1 A GLN 59 A GLN 40 1 Y 1 A PRO 60 A PRO 41 1 Y 1 A HIS 61 A HIS 42 1 Y 1 A GLY 62 A GLY 43 1 Y 1 A GLY 63 A GLY 44 1 Y 1 A GLY 64 A GLY 45 1 Y 1 A TRP 65 A TRP 46 1 Y 1 A GLY 66 A GLY 47 1 Y 1 A GLN 67 A GLN 48 1 Y 1 1 A PRO 671 A PRO 49 1 Y 2 1 A HIS 672 A HIS 50 1 Y 3 1 A GLY 673 A GLY 51 1 Y 4 1 A GLY 674 A GLY 52 1 Y 5 1 A GLY 675 A GLY 53 1 Y 6 1 A TRP 67 A TRP 54 1 Y 7 1 A GLY 67 A GLY 55 1 Y 8 1 A GLN 678 A GLN 56 1 Y 1 A PRO 68 A PRO 57 1 Y 1 A HIS 69 A HIS 58 1 Y 1 A GLY 70 A GLY 59 1 Y 1 A GLY 71 A GLY 60 1 Y 1 A GLY 72 A GLY 61 1 Y 1 A TRP 73 A TRP 62 1 Y 1 A GLY 74 A GLY 63 1 Y 1 A GLN 75 A GLN 64 1 Y 1 A PRO 76 A PRO 65 1 Y 1 A HIS 77 A HIS 66 1 Y 1 A GLY 78 A GLY 67 1 Y 1 A GLY 79 A GLY 68 1 Y 1 A GLY 80 A GLY 69 1 Y 1 A TRP 81 A TRP 70 1 Y 1 A GLY 82 A GLY 71 1 Y 1 A GLN 83 A GLN 72 1 Y 1 A PRO 84 A PRO 73 1 Y 1 A HIS 85 A HIS 74 1 Y 1 A GLY 86 A GLY 75 1 Y 1 A GLY 87 A GLY 76 1 Y 1 1 A GLY 871 A GLY 77 1 Y 1 A GLY 88 A GLY 78 1 Y 1 A TRP 89 A TRP 79 1 Y 1 A GLY 90 A GLY 80 1 Y 1 A GLN 91 A GLN 81 1 Y 1 A GLY 92 A GLY 82 1 Y 1 A GLY 93 A GLY 83 1 Y 1 A THR 95 A THR 84 1 Y 1 A HIS 96 A HIS 85 1 Y 1 A GLY 97 A GLY 86 1 Y 1 A GLN 98 A GLN 87 1 Y 1 A TRP 99 A TRP 88 1 Y 1 A ASN 100 A ASN 89 1 Y 1 A LYS 101 A LYS 90 1 Y 1 A PRO 102 A PRO 91 1 Y 1 A SER 103 A SER 92 1 Y 1 A LYS 104 A LYS 93 1 Y 1 A PRO 105 A PRO 94 1 Y 1 A LYS 106 A LYS 95 1 Y 1 A THR 107 A THR 96 1 Y 1 A ASN 108 A ASN 97 1 Y 1 A MET 109 A MET 98 1 Y 1 A LYS 110 A LYS 99 1 Y 1 A HIS 111 A HIS 100 1 Y 1 A VAL 112 A VAL 101 1 Y 1 A ALA 113 A ALA 102 1 Y 1 A GLY 114 A GLY 103 1 Y 1 A ALA 115 A ALA 104 1 Y 1 A ALA 116 A ALA 105 1 Y 1 A ALA 117 A ALA 106 1 Y 1 A ALA 118 A ALA 107 1 Y 1 A GLY 119 A GLY 108 1 Y 1 A ALA 120 A ALA 109 1 Y 1 A VAL 121 A VAL 110 1 Y 1 A VAL 122 A VAL 111 1 Y 1 A GLY 123 A GLY 112 1 Y 1 A ARG 228 A ARG 217 1 Y 1 A GLY 229 A GLY 218 1 Y 1 A ALA 230 A ALA 219 1 Y 1 A A O HG1 THR THR 188 192 1.59 1 A A HH OD1 TYR ASP 157 202 1.60 1 A TYR 128 0.105 SIDE CHAIN 1 A TYR 149 0.091 SIDE CHAIN 1 A TYR 157 0.097 SIDE CHAIN 1 A TYR 162 0.069 SIDE CHAIN 1 A TYR 225 0.088 SIDE CHAIN 1 -4.34 0.60 121.00 116.66 A A A CB CG CD1 TYR TYR TYR 128 128 128 N 1 9.50 1.40 123.60 133.10 A A A CD NE CZ ARG ARG ARG 156 156 156 N 1 A TYR 128 42.22 -159.55 1 A GLN 168 95.57 133.84 1 A GLN 172 -91.76 -75.58 PRION PROTEIN MINIMIZED AVERAGE BOVINE PRION PROTEIN RESIDUES 23-230 1 N N A ASP 144 A ASP 133 HELX_P A GLU 152 A GLU 141 1 H1 9 A ASN 173 A ASN 162 HELX_P A THR 192 A THR 181 1 H2 20 A GLU 200 A GLU 189 HELX_P A TYR 225 A TYR 214 1 H3 26 disulf 2.047 A CYS 179 A SG CYS 168 1_555 A CYS 214 A SG CYS 203 1_555 PRION PROTEIN PRION PROTEIN, PRION, BRAIN 1DX0 PDB 1 1DX0 PRIO_BOVIN UNP 1 P10279 21 22 1DX0 21 22 1DX0 A 1 1 2 25 241 1DX0 23 230 P10279 A 2 3 219 2 anti-parallel A TYR 128 A TYR 117 A GLY 131 A GLY 120 A VAL 161 A VAL 150 A ARG 164 A ARG 153 1 P 1