1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lopez-Garcia, F.
Zahn, R.
Riek, R.
Billeter, M.
Wuthrich, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
8334
10.1073/PNAS.97.15.8334
10899999
NMR Structure of the Bovine Prion Protein
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
23645.928
PRION PROTEIN
RESIDUES 23-230
YES
1
man
polymer
PRP, MAJOR PRION PROTEIN
no
no
GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWG
QGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN
QNNFVHDCVNITVKEHTVTTTTKGENFTETDIKMMERVVEQMCITQYQRESQAYYQRGA
GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWG
QGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN
QNNFVHDCVNITVKEHTVTTTTKGENFTETDIKMMERVVEQMCITQYQRESQAYYQRGA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BOVINE
sample
EXTRACELLULAR
PRNP
9913
BRAIN
BOS TAURUS
CYTOPLASM
469008
ESCHERICHIA COLI
BL21(DE3)
PRSET A
repository
Initial release
Version format compliance
Version format compliance
1
0
2000-07-20
1
1
2011-05-07
1
2
2011-07-13
BOVINE PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES
BOVINE PRION PROTEIN FRAGMENT 121-230 NMR,REPRESENTATIVE MINIMIZED STRUCTURE
BOVINE PRION PROTEIN NMR, 20 STRUCTURES
PRION PROTEIN DOMAIN PRP(121-231) FROM MOUSE, NMR, MINIMIZED AVERAGE STRUCTURE
SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231), 25 STRUCTURES
HUMAN PRION PROTEIN RESIDUES 23-230 NMR, REPRESENTATIVE STRUCTURE
HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, REPRESENTATIVE STRUCTURE
HUMAN PRION PROTEIN FRAGMENT 90-230 NMR, 20 STRUCTURES
HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, REPRESENTATIVE STRUCTURE
HUMAN PRION PROTEIN FRAGMENT 121-230 NMR, 20 STRUCTURES
PDBE
Y
PDBE
1999-12-15
REL
THE PDB ENTRIES 1DWY, 1DWZ, 1DX0 AND 1DX1 FORM
A SET OF STRUCTURE DETERMINATIONS AS:
1DWY THE MINIMIZED CONFORMER CLOSEST TO THE MEAN
OF THE FRAGMENT BPRP(121-230) (ONLY SUBMITTED
RESIDUES 124-227)
1DWZ 20 MINIMIZED CONFORMERS OF THE FRAGMENT BPRP(121-230)
(ONLY SUBMITTED RESIDUES 124-227)
1DX0 THE MINIMIZED CONFORMER CLOSEST TO THE MEAN OF
THE FULL LENGTH BPRP(23-230) (ONLY SUBMITTED RESIDUES
124-227)
1DX1 20 MINIMIZED CONFORMERS OF THE FULL LENGTH BPRP(23-230)
(ONLY SUBMITTED RESIDUES 124-227)
THE SEQUENCE NUMBERING GIVEN IN THESE ENTRIES IS THAT
FOR HUMAN PRION PROTEIN (RATHER THAN SEQUENTIAL) BASED
ON SEQUENCE ALIGNMENT.
RESIDUES (GLY SER) INSERTED AT THE N-TERMINUS
GLY A 21 CLONING ARTIFACT
SER A 22 CLONING ARTIFACT
CLOSEST TO THE MEAN (BACKBONE HEAVY ATOMS OF RESIDUES 125-227). THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN
LEAST RESTRAINT VIOLATION
50
1
NOESY
COSY
0.01
4.5
pH
1
atm
293
K
torsion angle dynamics
90% WATER/10% D2O
KORADI, BILLETER,GUNTERT
refinement
OPALP
structure solution
DYANA
750
Bruker
DRX
n
1
21
A
n
2
22
A
n
3
23
A
n
4
24
A
n
5
25
A
n
6
26
A
n
7
27
A
n
8
28
A
n
9
1
281
A
n
10
29
A
n
11
30
A
n
12
31
A
n
13
32
A
n
14
33
A
n
15
34
A
n
16
35
A
n
17
36
A
n
18
37
A
n
19
38
A
n
20
39
A
n
21
40
A
n
22
41
A
n
23
42
A
n
24
43
A
n
25
44
A
n
26
45
A
n
27
46
A
n
28
47
A
n
29
48
A
n
30
49
A
n
31
50
A
n
32
51
A
n
33
52
A
n
34
53
A
n
35
54
A
n
36
55
A
n
37
56
A
n
38
57
A
n
39
58
A
n
40
59
A
n
41
60
A
n
42
61
A
n
43
62
A
n
44
63
A
n
45
64
A
n
46
65
A
n
47
66
A
n
48
67
A
n
49
1
671
A
n
50
2
672
A
n
51
3
673
A
n
52
4
674
A
n
53
5
675
A
n
54
6
67
A
n
55
7
67
A
n
56
8
678
A
n
57
68
A
n
58
69
A
n
59
70
A
n
60
71
A
n
61
72
A
n
62
73
A
n
63
74
A
n
64
75
A
n
65
76
A
n
66
77
A
n
67
78
A
n
68
79
A
n
69
80
A
n
70
81
A
n
71
82
A
n
72
83
A
n
73
84
A
n
74
85
A
n
75
86
A
n
76
87
A
n
77
1
871
A
n
78
88
A
n
79
89
A
n
80
90
A
n
81
91
A
n
82
92
A
n
83
93
A
n
84
95
A
n
85
96
A
n
86
97
A
n
87
98
A
n
88
99
A
n
89
100
A
n
90
101
A
n
91
102
A
n
92
103
A
n
93
104
A
n
94
105
A
n
95
106
A
n
96
107
A
n
97
108
A
n
98
109
A
n
99
110
A
n
100
111
A
n
101
112
A
n
102
113
A
n
103
114
A
n
104
115
A
n
105
116
A
n
106
117
A
n
107
118
A
n
108
119
A
n
109
120
A
n
110
121
A
n
111
122
A
n
112
123
A
GLY
124
n
113
GLY
124
A
LEU
125
n
114
LEU
125
A
GLY
126
n
115
GLY
126
A
GLY
127
n
116
GLY
127
A
TYR
128
n
117
TYR
128
A
MET
129
n
118
MET
129
A
LEU
130
n
119
LEU
130
A
GLY
131
n
120
GLY
131
A
SER
132
n
121
SER
132
A
ALA
133
n
122
ALA
133
A
MET
134
n
123
MET
134
A
SER
135
n
124
SER
135
A
ARG
136
n
125
ARG
136
A
PRO
137
n
126
PRO
137
A
LEU
138
n
127
LEU
138
A
ILE
139
n
128
ILE
139
A
HIS
140
n
129
HIS
140
A
PHE
141
n
130
PHE
141
A
GLY
142
n
131
GLY
142
A
SER
143
n
132
SER
143
A
ASP
144
n
133
ASP
144
A
TYR
145
n
134
TYR
145
A
GLU
146
n
135
GLU
146
A
ASP
147
n
136
ASP
147
A
ARG
148
n
137
ARG
148
A
TYR
149
n
138
TYR
149
A
TYR
150
n
139
TYR
150
A
ARG
151
n
140
ARG
151
A
GLU
152
n
141
GLU
152
A
ASN
153
n
142
ASN
153
A
MET
154
n
143
MET
154
A
HIS
155
n
144
HIS
155
A
ARG
156
n
145
ARG
156
A
TYR
157
n
146
TYR
157
A
PRO
158
n
147
PRO
158
A
ASN
159
n
148
ASN
159
A
GLN
160
n
149
GLN
160
A
VAL
161
n
150
VAL
161
A
TYR
162
n
151
TYR
162
A
TYR
163
n
152
TYR
163
A
ARG
164
n
153
ARG
164
A
PRO
165
n
154
PRO
165
A
VAL
166
n
155
VAL
166
A
ASP
167
n
156
ASP
167
A
GLN
168
n
157
GLN
168
A
TYR
169
n
158
TYR
169
A
SER
170
n
159
SER
170
A
ASN
171
n
160
ASN
171
A
GLN
172
n
161
GLN
172
A
ASN
173
n
162
ASN
173
A
ASN
174
n
163
ASN
174
A
PHE
175
n
164
PHE
175
A
VAL
176
n
165
VAL
176
A
HIS
177
n
166
HIS
177
A
ASP
178
n
167
ASP
178
A
CYS
179
n
168
CYS
179
A
VAL
180
n
169
VAL
180
A
ASN
181
n
170
ASN
181
A
ILE
182
n
171
ILE
182
A
THR
183
n
172
THR
183
A
VAL
184
n
173
VAL
184
A
LYS
185
n
174
LYS
185
A
GLU
186
n
175
GLU
186
A
HIS
187
n
176
HIS
187
A
THR
188
n
177
THR
188
A
VAL
189
n
178
VAL
189
A
THR
190
n
179
THR
190
A
THR
191
n
180
THR
191
A
THR
192
n
181
THR
192
A
THR
193
n
182
THR
193
A
LYS
194
n
183
LYS
194
A
GLY
195
n
184
GLY
195
A
GLU
196
n
185
GLU
196
A
ASN
197
n
186
ASN
197
A
PHE
198
n
187
PHE
198
A
THR
199
n
188
THR
199
A
GLU
200
n
189
GLU
200
A
THR
201
n
190
THR
201
A
ASP
202
n
191
ASP
202
A
ILE
203
n
192
ILE
203
A
LYS
204
n
193
LYS
204
A
MET
205
n
194
MET
205
A
MET
206
n
195
MET
206
A
GLU
207
n
196
GLU
207
A
ARG
208
n
197
ARG
208
A
VAL
209
n
198
VAL
209
A
VAL
210
n
199
VAL
210
A
GLU
211
n
200
GLU
211
A
GLN
212
n
201
GLN
212
A
MET
213
n
202
MET
213
A
CYS
214
n
203
CYS
214
A
ILE
215
n
204
ILE
215
A
THR
216
n
205
THR
216
A
GLN
217
n
206
GLN
217
A
TYR
218
n
207
TYR
218
A
GLN
219
n
208
GLN
219
A
ARG
220
n
209
ARG
220
A
GLU
221
n
210
GLU
221
A
SER
222
n
211
SER
222
A
GLN
223
n
212
GLN
223
A
ALA
224
n
213
ALA
224
A
TYR
225
n
214
TYR
225
A
TYR
226
n
215
TYR
226
A
GLN
227
n
216
GLN
227
A
n
217
228
A
n
218
229
A
n
219
230
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
129
A
N
MET
118
A
O
TYR
163
A
O
TYR
152
1
A
GLY
21
A
GLY
1
1
Y
1
A
SER
22
A
SER
2
1
Y
1
A
LYS
23
A
LYS
3
1
Y
1
A
LYS
24
A
LYS
4
1
Y
1
A
ARG
25
A
ARG
5
1
Y
1
A
PRO
26
A
PRO
6
1
Y
1
A
LYS
27
A
LYS
7
1
Y
1
A
PRO
28
A
PRO
8
1
Y
1
1
A
GLY
281
A
GLY
9
1
Y
1
A
GLY
29
A
GLY
10
1
Y
1
A
GLY
30
A
GLY
11
1
Y
1
A
TRP
31
A
TRP
12
1
Y
1
A
ASN
32
A
ASN
13
1
Y
1
A
THR
33
A
THR
14
1
Y
1
A
GLY
34
A
GLY
15
1
Y
1
A
GLY
35
A
GLY
16
1
Y
1
A
SER
36
A
SER
17
1
Y
1
A
ARG
37
A
ARG
18
1
Y
1
A
TYR
38
A
TYR
19
1
Y
1
A
PRO
39
A
PRO
20
1
Y
1
A
GLY
40
A
GLY
21
1
Y
1
A
GLN
41
A
GLN
22
1
Y
1
A
GLY
42
A
GLY
23
1
Y
1
A
SER
43
A
SER
24
1
Y
1
A
PRO
44
A
PRO
25
1
Y
1
A
GLY
45
A
GLY
26
1
Y
1
A
GLY
46
A
GLY
27
1
Y
1
A
ASN
47
A
ASN
28
1
Y
1
A
ARG
48
A
ARG
29
1
Y
1
A
TYR
49
A
TYR
30
1
Y
1
A
PRO
50
A
PRO
31
1
Y
1
A
PRO
51
A
PRO
32
1
Y
1
A
GLN
52
A
GLN
33
1
Y
1
A
GLY
53
A
GLY
34
1
Y
1
A
GLY
54
A
GLY
35
1
Y
1
A
GLY
55
A
GLY
36
1
Y
1
A
GLY
56
A
GLY
37
1
Y
1
A
TRP
57
A
TRP
38
1
Y
1
A
GLY
58
A
GLY
39
1
Y
1
A
GLN
59
A
GLN
40
1
Y
1
A
PRO
60
A
PRO
41
1
Y
1
A
HIS
61
A
HIS
42
1
Y
1
A
GLY
62
A
GLY
43
1
Y
1
A
GLY
63
A
GLY
44
1
Y
1
A
GLY
64
A
GLY
45
1
Y
1
A
TRP
65
A
TRP
46
1
Y
1
A
GLY
66
A
GLY
47
1
Y
1
A
GLN
67
A
GLN
48
1
Y
1
1
A
PRO
671
A
PRO
49
1
Y
2
1
A
HIS
672
A
HIS
50
1
Y
3
1
A
GLY
673
A
GLY
51
1
Y
4
1
A
GLY
674
A
GLY
52
1
Y
5
1
A
GLY
675
A
GLY
53
1
Y
6
1
A
TRP
67
A
TRP
54
1
Y
7
1
A
GLY
67
A
GLY
55
1
Y
8
1
A
GLN
678
A
GLN
56
1
Y
1
A
PRO
68
A
PRO
57
1
Y
1
A
HIS
69
A
HIS
58
1
Y
1
A
GLY
70
A
GLY
59
1
Y
1
A
GLY
71
A
GLY
60
1
Y
1
A
GLY
72
A
GLY
61
1
Y
1
A
TRP
73
A
TRP
62
1
Y
1
A
GLY
74
A
GLY
63
1
Y
1
A
GLN
75
A
GLN
64
1
Y
1
A
PRO
76
A
PRO
65
1
Y
1
A
HIS
77
A
HIS
66
1
Y
1
A
GLY
78
A
GLY
67
1
Y
1
A
GLY
79
A
GLY
68
1
Y
1
A
GLY
80
A
GLY
69
1
Y
1
A
TRP
81
A
TRP
70
1
Y
1
A
GLY
82
A
GLY
71
1
Y
1
A
GLN
83
A
GLN
72
1
Y
1
A
PRO
84
A
PRO
73
1
Y
1
A
HIS
85
A
HIS
74
1
Y
1
A
GLY
86
A
GLY
75
1
Y
1
A
GLY
87
A
GLY
76
1
Y
1
1
A
GLY
871
A
GLY
77
1
Y
1
A
GLY
88
A
GLY
78
1
Y
1
A
TRP
89
A
TRP
79
1
Y
1
A
GLY
90
A
GLY
80
1
Y
1
A
GLN
91
A
GLN
81
1
Y
1
A
GLY
92
A
GLY
82
1
Y
1
A
GLY
93
A
GLY
83
1
Y
1
A
THR
95
A
THR
84
1
Y
1
A
HIS
96
A
HIS
85
1
Y
1
A
GLY
97
A
GLY
86
1
Y
1
A
GLN
98
A
GLN
87
1
Y
1
A
TRP
99
A
TRP
88
1
Y
1
A
ASN
100
A
ASN
89
1
Y
1
A
LYS
101
A
LYS
90
1
Y
1
A
PRO
102
A
PRO
91
1
Y
1
A
SER
103
A
SER
92
1
Y
1
A
LYS
104
A
LYS
93
1
Y
1
A
PRO
105
A
PRO
94
1
Y
1
A
LYS
106
A
LYS
95
1
Y
1
A
THR
107
A
THR
96
1
Y
1
A
ASN
108
A
ASN
97
1
Y
1
A
MET
109
A
MET
98
1
Y
1
A
LYS
110
A
LYS
99
1
Y
1
A
HIS
111
A
HIS
100
1
Y
1
A
VAL
112
A
VAL
101
1
Y
1
A
ALA
113
A
ALA
102
1
Y
1
A
GLY
114
A
GLY
103
1
Y
1
A
ALA
115
A
ALA
104
1
Y
1
A
ALA
116
A
ALA
105
1
Y
1
A
ALA
117
A
ALA
106
1
Y
1
A
ALA
118
A
ALA
107
1
Y
1
A
GLY
119
A
GLY
108
1
Y
1
A
ALA
120
A
ALA
109
1
Y
1
A
VAL
121
A
VAL
110
1
Y
1
A
VAL
122
A
VAL
111
1
Y
1
A
GLY
123
A
GLY
112
1
Y
1
A
ARG
228
A
ARG
217
1
Y
1
A
GLY
229
A
GLY
218
1
Y
1
A
ALA
230
A
ALA
219
1
Y
1
A
A
O
HG1
THR
THR
188
192
1.59
1
A
A
HH
OD1
TYR
ASP
157
202
1.60
1
A
TYR
128
0.105
SIDE CHAIN
1
A
TYR
149
0.091
SIDE CHAIN
1
A
TYR
157
0.097
SIDE CHAIN
1
A
TYR
162
0.069
SIDE CHAIN
1
A
TYR
225
0.088
SIDE CHAIN
1
-4.34
0.60
121.00
116.66
A
A
A
CB
CG
CD1
TYR
TYR
TYR
128
128
128
N
1
9.50
1.40
123.60
133.10
A
A
A
CD
NE
CZ
ARG
ARG
ARG
156
156
156
N
1
A
TYR
128
42.22
-159.55
1
A
GLN
168
95.57
133.84
1
A
GLN
172
-91.76
-75.58
PRION PROTEIN
MINIMIZED AVERAGE
BOVINE PRION PROTEIN RESIDUES 23-230
1
N
N
A
ASP
144
A
ASP
133
HELX_P
A
GLU
152
A
GLU
141
1
H1
9
A
ASN
173
A
ASN
162
HELX_P
A
THR
192
A
THR
181
1
H2
20
A
GLU
200
A
GLU
189
HELX_P
A
TYR
225
A
TYR
214
1
H3
26
disulf
2.047
A
CYS
179
A
SG
CYS
168
1_555
A
CYS
214
A
SG
CYS
203
1_555
PRION PROTEIN
PRION PROTEIN, PRION, BRAIN
1DX0
PDB
1
1DX0
PRIO_BOVIN
UNP
1
P10279
21
22
1DX0
21
22
1DX0
A
1
1
2
25
241
1DX0
23
230
P10279
A
2
3
219
2
anti-parallel
A
TYR
128
A
TYR
117
A
GLY
131
A
GLY
120
A
VAL
161
A
VAL
150
A
ARG
164
A
ARG
153
1
P 1