1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Schweimer, K. Hoffmann, S. Wastl, J. Maier, U.G. Roesch, P. Sticht, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Protein Sci. PRCIEI 0795 0961-8368 9 1474 1486 10.1110/ps.9.8.1474 10975569 Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 7784.847 RUBREDOXIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYG MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample THE RBX-GENE IS ENCODED ON THE G.THETA NUCLEOMORPH (CHROMOSOME II) NCBI 55529 55529 NUCLEOMORPH GUILLARDIA THETA 469008 ESCHERICHIA COLI BL21(DE3) PLASMID PET28A citation repository Initial release Version format compliance Version format compliance Database references 1 0 2000-01-04 1 1 2011-05-07 1 2 2011-07-13 1 3 2018-01-17 _citation.page_last _citation.pdbx_database_id_DOI _citation.title PDBE Y PDBE 1999-12-23 REL ZN ZINC ION THE IRON-ATOM PRESENT IN THE NATIVE RUBREDOXIN WAS REPLACED BY ZINC IN ORDER TO AVOID PARAMAGNETIC EFFECTS. THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED, ZINC-SUBSTITUTED RUBREDOXIN LEAST RESTRAINT VIOLATION, LOWEST ENERGY 60 21 1H-1H NOESY 1H-1H TOCSY 1H-15N HSQC 1H-13C CT-HSQC 15N-EDITED NOESY(3D) 13C-EDITED NOESY(3D) HNCO HNCA HNCACB CBCA(CO)NH HBHA(CO)NH HNHA HCCH-COSY 10 mM 6.4 pH 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. simulated annealing 10% WATER/90% D2O BRUNGER refinement X-PLOR structure solution NMRVIEW structure solution NDEE 600 Bruker DRX ZN 71 2 ZN ZN 71 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A ILE 3 n 3 ILE 3 A ASP 4 n 4 ASP 4 A GLU 5 n 5 GLU 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A TYR 8 n 8 TYR 8 A GLU 9 n 9 GLU 9 A CYS 10 n 10 CYS 10 A GLU 11 n 11 GLU 11 A ALA 12 n 12 ALA 12 A CYS 13 n 13 CYS 13 A GLY 14 n 14 GLY 14 A TYR 15 n 15 TYR 15 A ILE 16 n 16 ILE 16 A TYR 17 n 17 TYR 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A GLU 20 n 20 GLU 20 A LYS 21 n 21 LYS 21 A GLY 22 n 22 GLY 22 A ASP 23 n 23 ASP 23 A LYS 24 n 24 LYS 24 A PHE 25 n 25 PHE 25 A ALA 26 n 26 ALA 26 A GLY 27 n 27 GLY 27 A ILE 28 n 28 ILE 28 A PRO 29 n 29 PRO 29 A PRO 30 n 30 PRO 30 A GLY 31 n 31 GLY 31 A THR 32 n 32 THR 32 A PRO 33 n 33 PRO 33 A PHE 34 n 34 PHE 34 A VAL 35 n 35 VAL 35 A ASP 36 n 36 ASP 36 A LEU 37 n 37 LEU 37 A SER 38 n 38 SER 38 A ASP 39 n 39 ASP 39 A SER 40 n 40 SER 40 A PHE 41 n 41 PHE 41 A MET 42 n 42 MET 42 A CYS 43 n 43 CYS 43 A PRO 44 n 44 PRO 44 A ALA 45 n 45 ALA 45 A CYS 46 n 46 CYS 46 A ARG 47 n 47 ARG 47 A SER 48 n 48 SER 48 A PRO 49 n 49 PRO 49 A LYS 50 n 50 LYS 50 A ASN 51 n 51 ASN 51 A GLN 52 n 52 GLN 52 A PHE 53 n 53 PHE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A ILE 56 n 56 ILE 56 A LYS 57 n 57 LYS 57 A LYS 58 n 58 LYS 58 A VAL 59 n 59 VAL 59 A ILE 60 n 60 ILE 60 A ALA 61 n 61 ALA 61 A GLY 62 n 62 GLY 62 A PHE 63 n 63 PHE 63 A ALA 64 n 64 ALA 64 A GLU 65 n 65 GLU 65 A ASN 66 n 66 ASN 66 A GLN 67 n 67 GLN 67 A LYS 68 n 68 LYS 68 A TYR 69 n 69 TYR 69 A GLY 70 n 70 GLY 70 A author_defined_assembly 1 monomeric A CYS 43 A SG CYS 43 1_555 A ZN 71 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 109.6 A CYS 43 A SG CYS 43 1_555 A ZN 71 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 108.9 A CYS 13 A SG CYS 13 1_555 A ZN 71 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 110.6 A CYS 43 A SG CYS 43 1_555 A ZN 71 B ZN ZN 1_555 A CYS 10 A SG CYS 10 1_555 108.7 A CYS 13 A SG CYS 13 1_555 A ZN 71 B ZN ZN 1_555 A CYS 10 A SG CYS 10 1_555 109.5 A CYS 46 A SG CYS 46 1_555 A ZN 71 B ZN ZN 1_555 A CYS 10 A SG CYS 10 1_555 109.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 15 A O TYR 15 A N CYS 10 A N CYS 10 A O GLU 9 A O GLU 9 A N LYS 54 A N LYS 54 1 A ARG 47 0.230 SIDE CHAIN 2 A ARG 47 0.295 SIDE CHAIN 3 A ARG 47 0.317 SIDE CHAIN 4 A ARG 47 0.207 SIDE CHAIN 5 A ARG 47 0.200 SIDE CHAIN 6 A ARG 47 0.318 SIDE CHAIN 7 A ARG 47 0.168 SIDE CHAIN 8 A ARG 47 0.295 SIDE CHAIN 9 A ARG 47 0.304 SIDE CHAIN 10 A ARG 47 0.276 SIDE CHAIN 11 A ARG 47 0.157 SIDE CHAIN 12 A ARG 47 0.210 SIDE CHAIN 13 A ARG 47 0.223 SIDE CHAIN 14 A ARG 47 0.309 SIDE CHAIN 15 A ARG 47 0.260 SIDE CHAIN 16 A ARG 47 0.260 SIDE CHAIN 17 A ARG 47 0.253 SIDE CHAIN 18 A ARG 47 0.152 SIDE CHAIN 19 A ARG 47 0.210 SIDE CHAIN 20 A ARG 47 0.211 SIDE CHAIN 21 A ARG 47 0.316 SIDE CHAIN 1 A ASP 4 174.02 -24.88 1 A GLU 5 -69.68 61.44 1 A PRO 19 -68.77 -70.04 1 A PRO 30 -70.90 -163.38 1 A LEU 37 -56.61 178.97 1 A ARG 47 57.65 18.17 1 A ILE 56 -159.99 77.63 1 A LYS 57 -100.71 65.76 1 A ALA 61 -176.20 127.16 1 A GLU 65 -154.36 79.01 1 A ASN 66 -90.74 53.16 2 A GLU 2 -61.88 96.38 2 A GLU 5 -90.57 -148.47 2 A PRO 19 -68.58 -76.66 2 A PRO 30 -72.19 -164.87 2 A SER 55 -68.15 -178.44 2 A ILE 56 -160.00 88.12 2 A LYS 57 -101.66 64.55 2 A GLN 67 -103.54 62.89 3 A GLU 5 -91.38 -146.95 3 A PRO 19 -68.99 -72.24 3 A PRO 30 -73.01 -163.59 3 A LEU 37 -53.19 -179.25 3 A ILE 56 -157.60 69.93 3 A LYS 58 -170.47 148.59 3 A ALA 61 -153.36 23.23 3 A GLU 65 53.46 79.38 3 A ASN 66 -146.92 46.38 4 A ASP 4 178.06 -32.02 4 A GLU 5 -66.66 78.03 4 A PRO 30 -69.54 -164.14 4 A SER 38 -49.57 164.86 4 A ARG 47 52.95 17.73 4 A LYS 57 -108.69 66.46 4 A ALA 64 -174.19 127.70 4 A GLN 67 -116.68 -167.31 5 A GLU 2 53.68 71.46 5 A ASP 4 -146.70 10.53 5 A PRO 19 -68.81 -74.04 5 A PRO 30 -70.84 -163.54 5 A ARG 47 57.30 16.32 5 A ILE 56 -160.03 81.51 5 A ALA 61 -176.80 -56.74 5 A LYS 68 55.32 173.75 5 A TYR 69 -147.09 -72.90 6 A ASP 4 -176.35 -30.70 6 A GLU 5 -78.59 -142.04 6 A PRO 30 -71.42 -163.83 6 A ARG 47 57.66 17.60 6 A ILE 56 -158.78 89.19 6 A LYS 57 -105.59 67.48 6 A ILE 60 -152.33 71.67 6 A ALA 61 -157.24 78.84 6 A PHE 63 -147.36 -158.41 6 A GLU 65 -129.48 -165.51 6 A ASN 66 -170.65 -38.90 6 A GLN 67 -123.12 -164.07 7 A GLU 2 54.19 94.03 7 A ASP 4 179.56 112.77 7 A GLU 5 -158.61 26.27 7 A PRO 19 -70.06 -74.59 7 A PRO 30 -70.05 -163.85 7 A SER 40 -141.20 51.74 7 A ALA 45 -121.66 -50.42 7 A SER 55 -64.25 -179.94 7 A ILE 56 -160.12 91.96 7 A ALA 61 55.64 -164.06 7 A ALA 64 -153.38 40.36 7 A LYS 68 -90.35 -70.43 8 A ASP 4 171.77 -26.57 8 A PRO 30 -70.76 -163.73 8 A LEU 37 -53.66 170.68 8 A ARG 47 59.44 18.87 8 A SER 55 -59.88 172.42 8 A ILE 56 -159.97 84.77 8 A LYS 57 -110.00 68.01 8 A PHE 63 -156.77 34.89 8 A ALA 64 52.57 78.09 8 A GLN 67 -125.45 -168.10 8 A TYR 69 -167.13 81.64 9 A ASP 4 179.92 112.44 9 A GLU 5 -168.03 46.38 9 A PRO 30 -70.66 -163.79 9 A ARG 47 58.75 13.65 9 A SER 55 -50.95 177.69 9 A ILE 56 -141.98 58.05 9 A LYS 68 52.89 -170.33 10 A GLU 2 51.80 74.23 10 A ASP 4 178.91 -22.20 10 A GLU 5 -79.13 -141.26 10 A PRO 30 -70.95 -163.28 10 A SER 55 -52.00 -178.26 10 A LYS 57 -105.73 67.86 10 A ALA 64 -106.08 -76.92 10 A GLU 65 -109.17 -75.27 10 A ASN 66 -165.61 -59.15 10 A TYR 69 -58.37 -173.69 11 A ASP 4 -159.54 13.30 11 A PRO 30 -71.68 -163.54 11 A SER 38 -49.93 160.00 11 A ARG 47 58.49 14.56 11 A SER 55 -57.28 178.34 11 A ILE 56 -155.35 84.52 11 A GLU 65 -72.64 -158.37 11 A ASN 66 -165.14 74.00 11 A LYS 68 -140.99 -45.17 12 A ASP 4 179.91 -30.26 12 A GLU 5 -67.49 71.20 12 A PRO 30 -70.19 -163.77 12 A ARG 47 54.50 18.84 12 A LYS 57 -114.27 70.96 12 A ILE 60 -157.63 69.38 12 A ASN 66 -102.58 -64.57 12 A GLN 67 -139.75 -51.36 12 A TYR 69 -57.88 96.77 13 A ASP 4 -177.87 -25.73 13 A GLU 5 -64.87 75.80 13 A PRO 30 -69.99 -163.72 13 A LYS 57 -101.64 65.49 13 A TYR 69 -64.86 97.98 14 A ASP 4 178.83 112.75 14 A GLU 5 -171.95 54.22 14 A PRO 30 -68.59 -163.78 14 A LEU 37 -54.38 176.37 14 A ARG 47 58.37 13.84 14 A ILE 56 -151.48 76.49 14 A LYS 57 -100.01 62.73 14 A ALA 61 -67.41 90.87 14 A ALA 64 -173.47 142.16 14 A ASN 66 -147.91 48.86 14 A GLN 67 -152.69 40.50 15 A GLU 2 -115.31 77.50 15 A ASP 4 176.54 113.26 15 A GLU 5 -159.46 -148.89 15 A PRO 30 -67.89 -164.43 15 A SER 38 -56.53 173.31 15 A SER 55 -54.14 -174.17 15 A LYS 57 -114.54 70.86 15 A ALA 61 50.47 -149.41 15 A PHE 63 51.99 91.08 16 A GLU 2 -115.31 77.50 16 A ASP 4 176.54 113.26 16 A GLU 5 -159.46 -148.89 16 A PRO 30 -67.89 -164.43 16 A SER 38 -56.53 173.31 16 A SER 55 -54.14 -174.17 16 A LYS 57 -114.54 70.86 16 A ALA 61 50.47 -149.41 16 A PHE 63 51.99 91.08 17 A ASP 4 179.22 112.19 17 A GLU 5 -167.60 29.52 17 A PRO 19 -69.42 -71.32 17 A PRO 30 -69.27 -164.72 17 A ALA 61 -114.47 -160.31 17 A ALA 64 -140.82 53.07 17 A GLU 65 -108.47 46.63 17 A GLN 67 -164.19 29.82 17 A LYS 68 -91.83 47.31 18 A ASP 4 -177.56 -29.96 18 A GLU 5 -78.85 -141.39 18 A PRO 19 -68.77 -70.64 18 A PRO 30 -71.85 -163.39 18 A ARG 47 57.20 17.16 18 A SER 55 -52.89 178.99 18 A ILE 56 -160.11 91.67 18 A ALA 61 -101.04 -162.12 18 A GLU 65 -98.29 44.22 18 A ASN 66 -169.19 33.75 18 A GLN 67 56.40 168.34 19 A GLU 2 -173.94 76.70 19 A ASP 4 171.58 -21.26 19 A GLU 5 -67.89 65.27 19 A PRO 30 -72.39 -164.09 19 A SER 38 -52.68 177.67 19 A ARG 47 58.36 17.73 19 A LYS 57 -115.20 71.76 19 A ALA 61 53.51 -158.87 19 A PHE 63 -109.57 -68.68 19 A ASN 66 -78.45 -72.99 19 A GLN 67 -120.41 -79.78 20 A GLU 2 -114.35 58.81 20 A ASP 4 -157.80 10.81 20 A PRO 30 -72.45 -163.40 20 A ARG 47 45.48 23.56 20 A ILE 56 -155.95 67.52 20 A ILE 60 -95.07 57.86 20 A GLU 65 -156.47 50.85 21 A GLU 2 -173.52 66.57 21 A ASP 4 178.46 112.02 21 A GLU 5 -172.47 65.70 21 A PRO 30 -70.64 -163.37 21 A LEU 37 -52.10 172.81 21 A ARG 47 54.39 15.98 21 A SER 55 -52.12 -179.99 21 A ILE 56 -158.53 67.26 21 A LYS 57 -102.58 61.39 21 A ASN 66 -160.49 -44.41 RUBREDOXIN Rubredoxin from Guillardia theta 1 N N 2 N N A PRO 33 A PRO 33 HELX_P A LEU 37 A LEU 37 5 1 5 metalc 2.347 A ZN 71 B ZN ZN 1_555 A CYS 43 A SG CYS 43 1_555 metalc 2.354 A ZN 71 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 metalc 2.352 A ZN 71 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 metalc 2.352 A ZN 71 B ZN ZN 1_555 A CYS 10 A SG CYS 10 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, RUBREDOXIN, GUILLARDIA THETA, ZINC-SUBSTITUTION Q9XG40 UNP 1 Q9XG40 57 126 1DX8 1 70 Q9XG40 A 1 1 70 3 anti-parallel anti-parallel A TYR 15 A TYR 15 A TYR 17 A TYR 17 A TYR 8 A TYR 8 A CYS 10 A CYS 10 A PHE 53 A PHE 53 A SER 55 A SER 55 BINDING SITE FOR RESIDUE ZN A 71 Software 4 A CYS 10 A CYS 10 4 1_555 A CYS 13 A CYS 13 4 1_555 A CYS 43 A CYS 43 4 1_555 A CYS 46 A CYS 46 4 1_555 1 P 1