0.00
5.411
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2.240
A
O5'
DG
1
ATOM
A
O5'
DG
1
1
1.00
1
O
0.00
6.641
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A
C5'
DG
1
ATOM
A
C5'
DG
1
1
1.00
1
C
0.00
7.160
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A
C4'
DG
1
ATOM
A
C4'
DG
1
1
1.00
1
C
0.00
6.219
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0.808
A
O4'
DG
1
ATOM
A
O4'
DG
1
1
1.00
1
O
0.00
7.375
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A
C3'
DG
1
ATOM
A
C3'
DG
1
1
1.00
1
C
0.00
8.634
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A
O3'
DG
1
ATOM
A
O3'
DG
1
1
1.00
1
O
0.00
6.209
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A
C2'
DG
1
ATOM
A
C2'
DG
1
1
1.00
1
C
0.00
6.075
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1.533
A
C1'
DG
1
ATOM
A
C1'
DG
1
1
1.00
1
C
0.00
4.759
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1.264
A
N9
DG
1
ATOM
A
N9
DG
1
1
1.00
1
N
0.00
3.516
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1.303
A
C8
DG
1
ATOM
A
C8
DG
1
1
1.00
1
C
0.00
2.540
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0.983
A
N7
DG
1
ATOM
A
N7
DG
1
1
1.00
1
N
0.00
3.174
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0.716
A
C5
DG
1
ATOM
A
C5
DG
1
1
1.00
1
C
0.00
2.627
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A
C6
DG
1
ATOM
A
C6
DG
1
1
1.00
1
C
0.00
1.450
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A
O6
DG
1
ATOM
A
O6
DG
1
1
1.00
1
O
0.00
3.604
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A
N1
DG
1
ATOM
A
N1
DG
1
1
1.00
1
N
0.00
4.958
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A
C2
DG
1
ATOM
A
C2
DG
1
1
1.00
1
C
0.00
5.770
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A
N2
DG
1
ATOM
A
N2
DG
1
1
1.00
1
N
0.00
5.474
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A
N3
DG
1
ATOM
A
N3
DG
1
1
1.00
1
N
0.00
4.533
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A
C4
DG
1
ATOM
A
C4
DG
1
1
1.00
1
C
0.00
6.497
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A
H5'
DG
1
ATOM
A
H5'
DG
1
1
1.00
1
H
0.00
7.369
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A
H5''
DG
1
ATOM
A
H5''
DG
1
1
1.00
1
H
0.00
8.101
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0.939
A
H4'
DG
1
ATOM
A
H4'
DG
1
1
1.00
1
H
0.00
7.332
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A
H3'
DG
1
ATOM
A
H3'
DG
1
1
1.00
1
H
0.00
5.316
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3.306
A
H2'
DG
1
ATOM
A
H2'
DG
1
1
1.00
1
H
0.00
6.393
-5.570
3.670
A
H2''
DG
1
ATOM
A
H2''
DG
1
1
1.00
1
H
0.00
6.891
-5.296
1.260
A
H1'
DG
1
ATOM
A
H1'
DG
1
1
1.00
1
H
0.00
3.359
-6.964
1.567
A
H8
DG
1
ATOM
A
H8
DG
1
1
1.00
1
H
0.00
3.276
-0.764
-0.118
A
H1
DG
1
ATOM
A
H1
DG
1
1
1.00
1
H
0.00
5.391
0.067
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A
H21
DG
1
ATOM
A
H21
DG
1
1
1.00
1
H
0.00
6.758
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0.381
A
H22
DG
1
ATOM
A
H22
DG
1
1
1.00
1
H
0.00
4.789
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1.800
A
HO5'
DG
1
ATOM
A
HO5'
DG
1
1
1.00
1
H
0.00
9.205
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4.226
A
P
DG
2
ATOM
A
P
DG
1
2
1.00
1
P
0.00
10.671
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A
OP1
DG
2
ATOM
A
OP1
DG
1
2
1.00
1
O
0.00
8.380
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A
OP2
DG
2
ATOM
A
OP2
DG
1
2
1.00
1
O
0.00
8.916
-4.419
3.913
A
O5'
DG
2
ATOM
A
O5'
DG
1
2
1.00
1
O
0.00
9.658
-3.721
2.930
A
C5'
DG
2
ATOM
A
C5'
DG
1
2
1.00
1
C
0.00
9.298
-2.231
2.878
A
C4'
DG
2
ATOM
A
C4'
DG
1
2
1.00
1
C
0.00
7.940
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2.498
A
O4'
DG
2
ATOM
A
O4'
DG
1
2
1.00
1
O
0.00
9.442
-1.522
4.232
A
C3'
DG
2
ATOM
A
C3'
DG
1
2
1.00
1
C
0.00
10.033
-0.243
4.057
A
O3'
DG
2
ATOM
A
O3'
DG
1
2
1.00
1
O
0.00
8.033
-1.513
4.760
A
C2'
DG
2
ATOM
A
C2'
DG
1
2
1.00
1
C
0.00
7.323
-1.227
3.474
A
C1'
DG
2
ATOM
A
C1'
DG
1
2
1.00
1
C
0.00
5.877
-1.491
3.605
A
N9
DG
2
ATOM
A
N9
DG
1
2
1.00
1
N
0.00
5.280
-2.653
4.004
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
0.00
3.981
-2.654
3.901
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
0.00
3.690
-1.371
3.452
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
0.00
2.433
-0.766
3.158
A
C6
DG
2
ATOM
A
C6
DG
1
2
1.00
1
C
0.00
1.329
-1.303
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A
O6
DG
2
ATOM
A
O6
DG
1
2
1.00
1
O
0.00
2.552
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2.873
A
N1
DG
2
ATOM
A
N1
DG
1
2
1.00
1
N
0.00
3.752
1.280
2.840
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
0.00
3.700
2.601
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A
N2
DG
2
ATOM
A
N2
DG
1
2
1.00
1
N
0.00
4.942
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3.031
A
N3
DG
2
ATOM
A
N3
DG
1
2
1.00
1
N
0.00
4.842
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A
C4
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2
ATOM
A
C4
DG
1
2
1.00
1
C
0.00
9.474
-4.166
1.951
A
H5'
DG
2
ATOM
A
H5'
DG
1
2
1.00
1
H
0.00
10.722
-3.799
3.156
A
H5''
DG
2
ATOM
A
H5''
DG
1
2
1.00
1
H
0.00
9.966
-1.781
2.137
A
H4'
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2
ATOM
A
H4'
DG
1
2
1.00
1
H
0.00
9.937
-2.085
4.981
A
H3'
DG
2
ATOM
A
H3'
DG
1
2
1.00
1
H
0.00
7.796
-2.502
5.147
A
H2'
DG
2
ATOM
A
H2'
DG
1
2
1.00
1
H
0.00
7.878
-0.737
5.494
A
H2''
DG
2
ATOM
A
H2''
DG
1
2
1.00
1
H
0.00
7.586
-0.192
3.331
A
H1'
DG
2
ATOM
A
H1'
DG
1
2
1.00
1
H
0.00
5.861
-3.485
4.363
A
H8
DG
2
ATOM
A
H8
DG
1
2
1.00
1
H
0.00
1.689
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A
H1
DG
2
ATOM
A
H1
DG
1
2
1.00
1
H
0.00
2.810
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2.521
A
H21
DG
2
ATOM
A
H21
DG
1
2
1.00
1
H
0.00
4.556
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A
H22
DG
2
ATOM
A
H22
DG
1
2
1.00
1
H
0.00
10.354
0.754
5.290
A
P
DT
3
ATOM
A
P
DT
1
3
1.00
1
P
0.00
11.533
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4.923
A
OP1
DT
3
ATOM
A
OP1
DT
1
3
1.00
1
O
0.00
10.367
-0.030
6.546
A
OP2
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3
ATOM
A
OP2
DT
1
3
1.00
1
O
0.00
9.062
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5.314
A
O5'
DT
3
ATOM
A
O5'
DT
1
3
1.00
1
O
0.00
8.799
2.606
4.244
A
C5'
DT
3
ATOM
A
C5'
DT
1
3
1.00
1
C
0.00
7.572
3.467
4.544
A
C4'
DT
3
ATOM
A
C4'
DT
1
3
1.00
1
C
0.00
6.431
2.652
4.722
A
O4'
DT
3
ATOM
A
O4'
DT
1
3
1.00
1
O
0.00
7.734
4.315
5.812
A
C3'
DT
3
ATOM
A
C3'
DT
1
3
1.00
1
C
0.00
7.351
5.639
5.464
A
O3'
DT
3
ATOM
A
O3'
DT
1
3
1.00
1
O
0.00
6.753
3.657
6.795
A
C2'
DT
3
ATOM
A
C2'
DT
1
3
1.00
1
C
0.00
5.690
3.139
5.823
A
C1'
DT
3
ATOM
A
C1'
DT
1
3
1.00
1
C
0.00
4.832
2.026
6.314
A
N1
DT
3
ATOM
A
N1
DT
1
3
1.00
1
N
0.00
3.463
2.095
6.056
A
C2
DT
3
ATOM
A
C2
DT
1
3
1.00
1
C
0.00
2.883
3.131
5.741
A
O2
DT
3
ATOM
A
O2
DT
1
3
1.00
1
O
0.00
2.761
0.904
6.149
A
N3
DT
3
ATOM
A
N3
DT
1
3
1.00
1
N
0.00
3.278
-0.326
6.519
A
C4
DT
3
ATOM
A
C4
DT
1
3
1.00
1
C
0.00
2.556
-1.321
6.502
A
O4
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3
ATOM
A
O4
DT
1
3
1.00
1
O
0.00
4.681
-0.291
6.893
A
C5
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3
ATOM
A
C5
DT
1
3
1.00
1
C
0.00
5.347
-1.529
7.466
A
C7
DT
3
ATOM
A
C7
DT
1
3
1.00
1
C
0.00
5.396
0.857
6.771
A
C6
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3
ATOM
A
C6
DT
1
3
1.00
1
C
0.00
8.622
2.041
3.329
A
H5'
DT
3
ATOM
A
H5'
DT
1
3
1.00
1
H
0.00
9.654
3.266
4.090
A
H5''
DT
3
ATOM
A
H5''
DT
1
3
1.00
1
H
0.00
7.399
4.116
3.683
A
H4'
DT
3
ATOM
A
H4'
DT
1
3
1.00
1
H
0.00
8.767
4.309
6.168
A
H3'
DT
3
ATOM
A
H3'
DT
1
3
1.00
1
H
0.00
7.204
2.844
7.364
A
H2'
DT
3
ATOM
A
H2'
DT
1
3
1.00
1
H
0.00
6.375
4.370
7.514
A
H2''
DT
3
ATOM
A
H2''
DT
1
3
1.00
1
H
0.00
5.091
3.989
5.494
A
H1'
DT
3
ATOM
A
H1'
DT
1
3
1.00
1
H
0.00
1.776
0.946
5.927
A
H3
DT
3
ATOM
A
H3
DT
1
3
1.00
1
H
0.00
5.230
-1.530
8.550
A
H71
DT
3
ATOM
A
H71
DT
1
3
1.00
1
H
0.00
4.890
-2.430
7.058
A
H72
DT
3
ATOM
A
H72
DT
1
3
1.00
1
H
0.00
6.411
-1.539
7.232
A
H73
DT
3
ATOM
A
H73
DT
1
3
1.00
1
H
0.00
6.443
0.846
7.023
A
H6
DT
3
ATOM
A
H6
DT
1
3
1.00
1
H
0.00
7.555
6.898
6.453
A
P
DC
4
ATOM
A
P
DC
1
4
1.00
1
P
0.00
7.440
8.136
5.650
A
OP1
DC
4
ATOM
A
OP1
DC
1
4
1.00
1
O
0.00
8.766
6.664
7.271
A
OP2
DC
4
ATOM
A
OP2
DC
1
4
1.00
1
O
0.00
6.268
6.795
7.413
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O5'
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4
ATOM
A
O5'
DC
1
4
1.00
1
O
0.00
4.996
7.271
7.019
A
C5'
DC
4
ATOM
A
C5'
DC
1
4
1.00
1
C
0.00
3.922
6.862
8.036
A
C4'
DC
4
ATOM
A
C4'
DC
1
4
1.00
1
C
0.00
3.628
5.486
7.948
A
O4'
DC
4
ATOM
A
O4'
DC
1
4
1.00
1
O
0.00
4.304
7.127
9.503
A
C3'
DC
4
ATOM
A
C3'
DC
1
4
1.00
1
C
0.00
3.592
8.281
9.925
A
O3'
DC
4
ATOM
A
O3'
DC
1
4
1.00
1
O
0.00
3.862
5.835
10.236
A
C2'
DC
4
ATOM
A
C2'
DC
1
4
1.00
1
C
0.00
2.999
5.151
9.164
A
C1'
DC
4
ATOM
A
C1'
DC
1
4
1.00
1
C
0.00
2.921
3.674
9.282
A
N1
DC
4
ATOM
A
N1
DC
1
4
1.00
1
N
0.00
1.708
3.031
9.029
A
C2
DC
4
ATOM
A
C2
DC
1
4
1.00
1
C
0.00
0.710
3.658
8.683
A
O2
DC
4
ATOM
A
O2
DC
1
4
1.00
1
O
0.00
1.653
1.676
9.160
A
N3
DC
4
ATOM
A
N3
DC
1
4
1.00
1
N
0.00
2.739
0.969
9.505
A
C4
DC
4
ATOM
A
C4
DC
1
4
1.00
1
C
0.00
2.639
-0.363
9.543
A
N4
DC
4
ATOM
A
N4
DC
1
4
1.00
1
N
0.00
4.022
1.601
9.652
A
C5
DC
4
ATOM
A
C5
DC
1
4
1.00
1
C
0.00
4.059
2.948
9.513
A
C6
DC
4
ATOM
A
C6
DC
1
4
1.00
1
C
0.00
4.728
6.870
6.040
A
H5'
DC
4
ATOM
A
H5'
DC
1
4
1.00
1
H
0.00
5.029
8.360
6.961
A
H5''
DC
4
ATOM
A
H5''
DC
1
4
1.00
1
H
0.00
3.002
7.398
7.797
A
H4'
DC
4
ATOM
A
H4'
DC
1
4
1.00
1
H
0.00
5.391
7.287
9.552
A
H3'
DC
4
ATOM
A
H3'
DC
1
4
1.00
1
H
0.00
4.749
5.259
10.512
A
H2'
DC
4
ATOM
A
H2'
DC
1
4
1.00
1
H
0.00
3.275
5.958
11.151
A
H2''
DC
4
ATOM
A
H2''
DC
1
4
1.00
1
H
0.00
2.003
5.598
9.206
A
H1'
DC
4
ATOM
A
H1'
DC
1
4
1.00
1
H
0.00
1.736
-0.794
9.394
A
H41
DC
4
ATOM
A
H41
DC
1
4
1.00
1
H
0.00
3.446
-0.932
9.747
A
H42
DC
4
ATOM
A
H42
DC
1
4
1.00
1
H
0.00
4.937
1.058
9.838
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4
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1
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1
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4.994
3.490
9.546
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4
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1
4
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1
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4.001
9.129
11.236
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5
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1
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3.254
10.407
11.201
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5
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1
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5.478
9.152
11.334
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5
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3.437
8.241
12.458
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2.206
8.518
13.105
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0.968
8.363
12.203
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11.264
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8.032
12.958
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13.657
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11.888
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6.625
11.199
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5.226
11.676
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-0.763
4.157
11.210
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-0.323
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11.600
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0.769
3.317
12.400
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1.709
2.551
13.125
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1.698
1.213
13.155
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5
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2.622
3.198
13.877
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13.885
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13.233
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0.905
4.680
12.494
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9.529
13.512
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13.941
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11.692
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13.521
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6.905
12.251
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8.273
11.220
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6.556
10.193
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4.315
10.527
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12.538
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9.315
15.249
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15.639
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18.415
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6
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4.869
17.582
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-1.224
3.908
17.527
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-1.406
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18.060
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18.457
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1.782
18.114
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17.669
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1.878
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17.751
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1.079
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17.081
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0.012
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14.597
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17.986
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6
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7
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7
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21.956
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-3.065
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7
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22.037
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22.047
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5.195
19.400
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20.712
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20.795
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7
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23.014
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7
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23.010
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24.191
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1.760
22.473
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21.778
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22.291
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7
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3.194
24.746
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8
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8
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25.068
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8
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-0.637
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-0.539
24.575
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8
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-0.739
26.530
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8
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26.895
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-6.001
-0.266
26.878
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-5.217
-0.790
25.690
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8
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-3.909
-0.126
25.516
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-3.627
1.215
25.514
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8
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1
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-2.410
1.510
25.145
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8
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-1.830
0.267
24.919
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8
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1
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C
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-0.548
-0.135
24.490
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8
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1
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1
C
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0.412
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24.136
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8
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1
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N
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-0.289
-1.454
24.406
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8
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1
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N
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-1.245
-2.327
24.716
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8
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1
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C
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-2.491
-2.077
25.105
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8
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-2.725
-0.740
25.187
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8
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-8.110
0.625
23.408
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8
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8
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0.443
24.769
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8
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-1.538
24.565
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8
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8
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-8.170
-0.102
26.982
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8
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-5.955
0.818
26.957
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8
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-5.636
-0.705
27.788
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-5.096
-1.862
25.836
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8
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1
H
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A
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8
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1
8
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1
H
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8
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H61
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1
8
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1
H
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A
H62
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8
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H62
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1
8
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1
H
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8
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1
8
1.00
1
H
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9
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1
9
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1
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1
9
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1
O
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9
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9
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O
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9
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1
9
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1
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9
ATOM
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1
9
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1
C
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9
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1
9
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1
O
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9
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9
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1
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9
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9
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9
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28.954
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9
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1
9
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28.581
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9
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1
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1
N
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9
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1
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28.227
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9
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N
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27.869
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9
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1
C
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9
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1
9
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1
C
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9
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1
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1
O
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9
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1
N
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9
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1
9
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1
C
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9
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1
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1
N
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9
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N
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9
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9
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28.341
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9
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28.181
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9
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30.572
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9
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9
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30.170
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9
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31.094
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9
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29.187
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9
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9
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9
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9
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9
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10.663
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1
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2
1
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O
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11.330
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25.457
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1
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2
1
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C
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10.440
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1
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2
1
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1
C
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9.266
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1
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1
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O
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9.931
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25.008
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1
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1
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1
C
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9.746
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1
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2
1
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O
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8.628
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24.547
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1
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2
1
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1
C
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8.133
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25.914
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1
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DC
2
1
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1
C
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6.974
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25.903
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1
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2
1
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1
N
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1
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2
1
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1
C
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5.513
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1
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2
1
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1
O
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1
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2
1
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1
N
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1
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2
1
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1
C
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1
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2
1
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1
N
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6.156
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1
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2
1
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1
C
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7.144
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1
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2
1
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1
C
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1
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2
1
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1
H
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12.209
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25.000
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1
ATOM
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2
1
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1
H
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11.075
-2.207
26.806
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1
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2
1
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H
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10.612
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24.189
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1
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2
1
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H
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8.801
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1
ATOM
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2
1
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1
H
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7.921
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24.131
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1
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2
1
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1
H
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7.856
-2.596
26.340
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1
ATOM
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DC
2
1
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1
H
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H41
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1
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H41
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2
1
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1
H
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4.016
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H42
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1
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H42
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2
1
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1
H
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6.375
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1
ATOM
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2
1
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1
H
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8.068
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1
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2
1
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1
H
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11.273
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1
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DC
2
1
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1
H
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9.400
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P
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2
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P
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2
2
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1
P
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2
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2
2
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1
O
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9.615
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2
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2
2
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1
O
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7.815
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2
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2
2
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O
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7.303
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26.119
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2
ATOM
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2
2
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1
C
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5.798
-6.345
25.997
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2
ATOM
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DT
2
2
1.00
1
C
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-5.117
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2
ATOM
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2
2
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1
O
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24.824
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2
ATOM
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DT
2
2
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1
C
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-8.267
25.289
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2
ATOM
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2
2
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O
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4.780
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23.826
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2
ATOM
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DT
2
2
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1
C
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4.158
-5.295
24.779
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2
ATOM
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DT
2
2
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1
C
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3.876
-3.974
24.156
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N1
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2
ATOM
B
N1
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2
2
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1
N
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2.614
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24.326
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C2
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2
ATOM
B
C2
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2
2
1.00
1
C
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1.643
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24.740
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2
ATOM
B
O2
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2
2
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1
O
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2.502
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24.007
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N3
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2
ATOM
B
N3
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2
2
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1
N
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3.510
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23.515
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2
ATOM
B
C4
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2
2
1.00
1
C
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3.303
-0.047
23.354
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2
ATOM
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2
2
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1
O
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4.757
-1.942
23.247
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2
ATOM
B
C5
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2
2
1.00
1
C
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5.922
-1.198
22.616
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C7
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2
ATOM
B
C7
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2
2
1.00
1
C
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4.892
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23.579
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C6
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2
ATOM
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2
2
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1
C
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7.487
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26.945
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2
ATOM
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2
2
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1
H
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7.794
-7.034
26.333
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2
ATOM
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2
2
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1
H
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5.450
-6.785
26.933
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2
ATOM
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2
2
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1
H
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6.340
-7.764
24.430
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2
ATOM
B
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2
2
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1
H
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5.519
-5.855
23.170
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2
ATOM
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DT
2
2
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1
H
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4.025
-6.783
23.205
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2
ATOM
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2
2
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1
H
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3.274
-5.748
25.229
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2
ATOM
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DT
2
2
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1
H
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1.593
-1.646
24.151
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2
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2
2
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1
H
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6.256
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23.276
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H71
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2
ATOM
B
H71
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2
2
1.00
1
H
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6.765
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H72
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2
ATOM
B
H72
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2
2
1.00
1
H
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5.613
-0.748
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H73
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2
ATOM
B
H73
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2
2
1.00
1
H
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5.829
-3.748
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H6
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2
ATOM
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H6
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2
2
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1
H
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4.070
-9.508
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P
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3
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P
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2
3
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1
P
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3.644
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3
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2
3
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1
O
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5.109
-9.756
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3
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2
3
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O
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2.762
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3
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2
3
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O
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1.503
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24.263
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3
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DC
2
3
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C
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0.472
-8.131
23.424
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3
ATOM
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DC
2
3
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1
C
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0.818
-6.763
23.338
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3
ATOM
B
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DC
2
3
1.00
1
O
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0.331
-8.630
21.975
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3
ATOM
B
C3'
DC
2
3
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1
C
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-0.847
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21.869
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3
ATOM
B
O3'
DC
2
3
1.00
1
O
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0.249
-7.332
21.145
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3
ATOM
B
C2'
DC
2
3
1.00
1
C
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0.147
-6.243
22.209
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C1'
DC
3
ATOM
B
C1'
DC
2
3
1.00
1
C
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0.775
-4.991
21.744
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N1
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3
ATOM
B
N1
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2
3
1.00
1
N
0.00
0.024
-3.828
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C2
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3
ATOM
B
C2
DC
2
3
1.00
1
C
0.00
-1.182
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21.826
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O2
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3
ATOM
B
O2
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2
3
1.00
1
O
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0.658
-2.697
21.186
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N3
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3
ATOM
B
N3
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2
3
1.00
1
N
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1.959
-2.714
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C4
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3
ATOM
B
C4
DC
2
3
1.00
1
C
0.00
2.528
-1.563
20.489
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N4
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3
ATOM
B
N4
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2
3
1.00
1
N
0.00
2.727
-3.931
20.925
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C5
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3
ATOM
B
C5
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2
3
1.00
1
C
0.00
2.086
-5.027
21.384
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C6
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3
ATOM
B
C6
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2
3
1.00
1
C
0.00
1.593
-8.406
25.234
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H5'
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3
ATOM
B
H5'
DC
2
3
1.00
1
H
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1.149
-9.916
24.412
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H5''
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3
ATOM
B
H5''
DC
2
3
1.00
1
H
0.00
-0.489
-8.223
23.937
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H4'
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3
ATOM
B
H4'
DC
2
3
1.00
1
H
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1.218
-9.222
21.728
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H3'
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3
ATOM
B
H3'
DC
2
3
1.00
1
H
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1.112
-7.198
20.482
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H2'
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3
ATOM
B
H2'
DC
2
3
1.00
1
H
0.00
-0.635
-7.250
20.528
B
H2''
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3
ATOM
B
H2''
DC
2
3
1.00
1
H
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22.452
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3
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3
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1.958
-0.727
20.460
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3
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2
3
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-1.530
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3
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3
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-4.041
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3
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3
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3
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2
3
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20.477
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4
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4
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4
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4
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4
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19.682
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4
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4
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19.709
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4
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4
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4
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4
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17.467
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4
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4
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18.230
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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4
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16.491
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4
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4
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18.344
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4
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17.646
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4
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4
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4
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4
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4
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4
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16.472
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5
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5
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5
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5
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5
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5
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5
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13.404
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5
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11.945
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5
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5
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5
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12.374
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5
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5
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12.053
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5
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5
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5
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5
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C
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5
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5
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C
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5
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O
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5
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5
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5
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C
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5
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5
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5
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5
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13.940
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5
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13.654
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5
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13.956
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5
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5
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H
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11.607
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5
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5
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H
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10.694
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5
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10.534
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5
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-2.805
12.660
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5
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11.797
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5
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H
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5
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H
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5
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5
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H
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5
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H
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6
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P
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6
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P
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10.736
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6
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6
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O
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9.565
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6
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O
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9.774
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6
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O
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10.314
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6
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C
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9.584
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6
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6
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C
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9.837
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6
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6
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O
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-0.837
8.059
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6
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6
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C
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7.609
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6
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6
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O
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-6.951
-1.249
7.593
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6
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6
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C
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-6.103
-0.504
8.615
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6
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6
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C
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-0.970
8.628
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N9
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6
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N9
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6
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N
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-2.256
8.682
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6
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6
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C
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8.713
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N7
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6
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N7
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6
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N
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-1.030
8.674
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6
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6
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C
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-0.495
8.725
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6
ATOM
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C6
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2
6
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C
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8.846
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6
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6
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O
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-1.166
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8.677
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6
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N1
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2
6
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N
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-2.298
1.680
8.539
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6
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2
6
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C
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8.363
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N2
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6
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N2
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2
6
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N
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1.181
8.521
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6
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6
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N
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-0.177
8.604
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6
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6
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C
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-8.570
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11.374
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6
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6
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-1.848
10.207
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6
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6
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0.154
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6
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6
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-1.545
7.758
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6
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6
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H
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-6.812
-2.326
7.706
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6
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6
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-6.717
-0.963
6.573
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6
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6
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H
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0.567
8.413
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6
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6
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-3.114
8.698
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6
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6
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H
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8.715
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6
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6
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H
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-1.185
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8.343
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6
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6
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8.216
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6
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6
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H
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6.080
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7
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P
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6.086
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7
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O
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-8.911
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5.262
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7
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O
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5.655
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7
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O
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3.171
6.193
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7
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C
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-6.870
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5.655
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2
7
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C
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-5.655
3.381
6.070
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7
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O
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-6.868
4.061
4.119
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2
7
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C
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-6.512
5.376
3.721
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7
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2
7
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O
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-5.803
3.026
3.771
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ATOM
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2
7
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C
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-4.838
3.199
4.932
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7
ATOM
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C1'
DA
2
7
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1
C
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-3.965
2.016
5.084
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N9
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N9
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2
7
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1
N
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-4.329
0.695
5.125
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C8
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7
ATOM
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C8
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2
7
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1
C
0.00
-3.336
-0.133
5.296
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N7
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7
ATOM
B
N7
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2
7
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1
N
0.00
-2.226
0.702
5.369
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7
ATOM
B
C5
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2
7
1.00
1
C
0.00
-0.849
0.458
5.556
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7
ATOM
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C6
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2
7
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1
C
0.00
-0.343
-0.767
5.741
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N6
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7
ATOM
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N6
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2
7
1.00
1
N
0.00
-0.013
1.514
5.585
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N1
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7
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B
N1
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2
7
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1
N
0.00
-0.505
2.738
5.410
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C2
DA
7
ATOM
B
C2
DA
2
7
1.00
1
C
0.00
-1.772
3.098
5.228
B
N3
DA
7
ATOM
B
N3
DA
2
7
1.00
1
N
0.00
-2.598
2.016
5.222
B
C4
DA
7
ATOM
B
C4
DA
2
7
1.00
1
C
0.00
-7.977
3.125
7.281
B
H5'
DA
7
ATOM
B
H5'
DA
2
7
1.00
1
H
0.00
-8.977
3.668
5.918
B
H5''
DA
7
ATOM
B
H5''
DA
2
7
1.00
1
H
0.00
-6.931
4.995
6.074
B
H4'
DA
7
ATOM
B
H4'
DA
2
7
1.00
1
H
0.00
-7.838
3.796
3.697
B
H3'
DA
7
ATOM
B
H3'
DA
2
7
1.00
1
H
0.00
-6.269
2.037
3.735
B
H2'
DA
7
ATOM
B
H2'
DA
2
7
1.00
1
H
0.00
-5.266
3.218
2.854
B
H2''
DA
7
ATOM
B
H2''
DA
2
7
1.00
1
H
0.00
-4.253
4.103
4.750
B
H1'
DA
7
ATOM
B
H1'
DA
2
7
1.00
1
H
0.00
-5.357
0.383
5.013
B
H8
DA
7
ATOM
B
H8
DA
2
7
1.00
1
H
0.00
0.648
-0.895
5.893
B
H61
DA
7
ATOM
B
H61
DA
2
7
1.00
1
H
0.00
-0.962
-1.565
5.741
B
H62
DA
7
ATOM
B
H62
DA
2
7
1.00
1
H
0.00
0.212
3.545
5.435
B
H2
DA
7
ATOM
B
H2
DA
2
7
1.00
1
H
0.00
-6.387
5.818
2.169
B
P
DC
8
ATOM
B
P
DC
2
8
1.00
1
P
0.00
-6.915
7.195
2.037
B
OP1
DC
8
ATOM
B
OP1
DC
2
8
1.00
1
O
0.00
-6.931
4.737
1.317
B
OP2
DC
8
ATOM
B
OP2
DC
2
8
1.00
1
O
0.00
-4.789
5.869
1.958
B
O5'
DC
8
ATOM
B
O5'
DC
2
8
1.00
1
O
0.00
-4.003
6.843
2.618
B
C5'
DC
8
ATOM
B
C5'
DC
2
8
1.00
1
C
0.00
-2.514
6.625
2.341
B
C4'
DC
8
ATOM
B
C4'
DC
2
8
1.00
1
C
0.00
-2.147
5.319
2.760
B
O4'
DC
8
ATOM
B
O4'
DC
2
8
1.00
1
O
0.00
-2.141
6.764
0.855
B
C3'
DC
8
ATOM
B
C3'
DC
2
8
1.00
1
C
0.00
-0.943
7.522
0.784
B
O3'
DC
8
ATOM
B
O3'
DC
2
8
1.00
1
O
0.00
-1.934
5.300
0.451
B
C2'
DC
8
ATOM
B
C2'
DC
2
8
1.00
1
C
0.00
-1.347
4.747
1.747
B
C1'
DC
8
ATOM
B
C1'
DC
2
8
1.00
1
C
0.00
-1.373
3.264
1.833
B
N1
DC
8
ATOM
B
N1
DC
2
8
1.00
1
N
0.00
-0.208
2.572
2.172
B
C2
DC
8
ATOM
B
C2
DC
2
8
1.00
1
C
0.00
0.875
3.144
2.277
B
O2
DC
8
ATOM
B
O2
DC
2
8
1.00
1
O
0.00
-0.286
1.226
2.373
B
N3
DC
8
ATOM
B
N3
DC
2
8
1.00
1
N
0.00
-1.442
0.563
2.223
B
C4
DC
8
ATOM
B
C4
DC
2
8
1.00
1
C
0.00
-1.465
-0.748
2.476
B
N4
DC
8
ATOM
B
N4
DC
2
8
1.00
1
N
0.00
-2.640
1.250
1.836
B
C5
DC
8
ATOM
B
C5
DC
2
8
1.00
1
C
0.00
-2.550
2.583
1.661
B
C6
DC
8
ATOM
B
C6
DC
2
8
1.00
1
C
0.00
-4.166
6.776
3.695
B
H5'
DC
8
ATOM
B
H5'
DC
2
8
1.00
1
H
0.00
-4.286
7.842
2.281
B
H5''
DC
8
ATOM
B
H5''
DC
2
8
1.00
1
H
0.00
-1.954
7.354
2.928
B
H4'
DC
8
ATOM
B
H4'
DC
2
8
1.00
1
H
0.00
-2.921
7.270
0.279
B
H3'
DC
8
ATOM
B
H3'
DC
2
8
1.00
1
H
0.00
-2.892
4.829
0.226
B
H2'
DC
8
ATOM
B
H2'
DC
2
8
1.00
1
H
0.00
-1.261
5.168
-0.392
B
H2''
DC
8
ATOM
B
H2''
DC
2
8
1.00
1
H
0.00
-0.341
5.142
1.850
B
H1'
DC
8
ATOM
B
H1'
DC
2
8
1.00
1
H
0.00
-0.607
-1.208
2.754
B
H41
DC
8
ATOM
B
H41
DC
2
8
1.00
1
H
0.00
-2.326
-1.269
2.408
B
H42
DC
8
ATOM
B
H42
DC
2
8
1.00
1
H
0.00
-3.607
0.800
1.689
B
H5
DC
8
ATOM
B
H5
DC
2
8
1.00
1
H
0.00
-3.442
3.104
1.372
B
H6
DC
8
ATOM
B
H6
DC
2
8
1.00
1
H
0.00
-0.179
7.853
-0.602
B
P
DC
9
ATOM
B
P
DC
2
9
1.00
1
P
0.00
0.231
9.274
-0.576
B
OP1
DC
9
ATOM
B
OP1
DC
2
9
1.00
1
O
0.00
-0.986
7.343
-1.734
B
OP2
DC
9
ATOM
B
OP2
DC
2
9
1.00
1
O
0.00
1.148
6.942
-0.478
B
O5'
DC
9
ATOM
B
O5'
DC
2
9
1.00
1
O
0.00
2.130
7.219
0.503
B
C5'
DC
9
ATOM
B
C5'
DC
2
9
1.00
1
C
0.00
3.335
6.278
0.389
B
C4'
DC
9
ATOM
B
C4'
DC
2
9
1.00
1
C
0.00
2.923
4.937
0.627
B
O4'
DC
9
ATOM
B
O4'
DC
2
9
1.00
1
O
0.00
3.975
6.310
-1.006
B
C3'
DC
9
ATOM
B
C3'
DC
2
9
1.00
1
C
0.00
5.374
6.145
-0.899
B
O3'
DC
9
ATOM
B
O3'
DC
2
9
1.00
1
O
0.00
3.369
5.073
-1.668
B
C2'
DC
9
ATOM
B
C2'
DC
2
9
1.00
1
C
0.00
3.319
4.125
-0.469
B
C1'
DC
9
ATOM
B
C1'
DC
2
9
1.00
1
C
0.00
2.370
2.992
-0.651
B
N1
DC
9
ATOM
B
N1
DC
2
9
1.00
1
N
0.00
2.819
1.682
-0.464
B
C2
DC
9
ATOM
B
C2
DC
2
9
1.00
1
C
0.00
4.007
1.424
-0.285
B
O2
DC
9
ATOM
B
O2
DC
2
9
1.00
1
O
0.00
1.907
0.669
-0.497
B
N3
DC
9
ATOM
B
N3
DC
2
9
1.00
1
N
0.00
0.611
0.908
-0.741
B
C4
DC
9
ATOM
B
C4
DC
2
9
1.00
1
C
0.00
-0.244
-0.120
-0.720
B
N4
DC
9
ATOM
B
N4
DC
2
9
1.00
1
N
0.00
0.139
2.238
-1.004
B
C5
DC
9
ATOM
B
C5
DC
2
9
1.00
1
C
0.00
1.050
3.234
-0.939
B
C6
DC
9
ATOM
B
C6
DC
2
9
1.00
1
C
0.00
1.694
7.114
1.498
B
H5'
DC
9
ATOM
B
H5'
DC
2
9
1.00
1
H
0.00
2.486
8.244
0.384
B
H5''
DC
9
ATOM
B
H5''
DC
2
9
1.00
1
H
0.00
4.054
6.599
1.148
B
H4'
DC
9
ATOM
B
H4'
DC
2
9
1.00
1
H
0.00
3.770
7.240
-1.542
B
H3'
DC
9
ATOM
B
H3'
DC
2
9
1.00
1
H
0.00
5.733
6.890
-0.412
B
HO3'
DC
9
ATOM
B
HO3'
DC
2
9
1.00
1
H
0.00
2.375
5.295
-2.055
B
H2'
DC
9
ATOM
B
H2'
DC
2
9
1.00
1
H
0.00
3.980
4.670
-2.471
B
H2''
DC
9
ATOM
B
H2''
DC
2
9
1.00
1
H
0.00
4.335
3.767
-0.291
B
H1'
DC
9
ATOM
B
H1'
DC
2
9
1.00
1
H
0.00
0.107
-1.043
-0.501
B
H41
DC
9
ATOM
B
H41
DC
2
9
1.00
1
H
0.00
-1.228
0.029
-0.886
B
H42
DC
9
ATOM
B
H42
DC
2
9
1.00
1
H
0.00
-0.884
2.495
-1.226
B
H5
DC
9
ATOM
B
H5
DC
2
9
1.00
1
H
0.00
0.718
4.240
-1.118
B
H6
DC
9
ATOM
B
H6
DC
2
9
1.00
1
H
0.00
-4.490
-2.431
15.602
A
C1
BAP
10
HETATM
C
C1
BAP
3
1.00
1
C
0.00
-5.033
-1.167
15.752
A
C2
BAP
10
HETATM
C
C2
BAP
3
1.00
1
C
0.00
-4.198
-0.046
15.655
A
C3
BAP
10
HETATM
C
C3
BAP
3
1.00
1
C
0.00
-2.817
-0.218
15.405
A
C3A
BAP
10
HETATM
C
C3A
BAP
3
1.00
1
C
0.00
-1.973
0.899
15.309
A
C4
BAP
10
HETATM
C
C4
BAP
3
1.00
1
C
0.00
-0.612
0.723
15.058
A
C5
BAP
10
HETATM
C
C5
BAP
3
1.00
1
C
0.00
-0.075
-0.571
14.858
A
C5A
BAP
10
HETATM
C
C5A
BAP
3
1.00
1
C
0.00
1.286
-0.761
14.482
A
C6
BAP
10
HETATM
C
C6
BAP
3
1.00
1
C
0.00
1.769
-2.058
14.224
A
C7
BAP
10
HETATM
C
C7
BAP
3
1.00
1
C
0.00
0.928
-3.151
14.450
A
C8
BAP
10
HETATM
C
C8
BAP
3
1.00
1
C
0.00
-0.418
-2.949
14.787
A
C8A
BAP
10
HETATM
C
C8A
BAP
3
1.00
1
C
0.00
-1.261
-4.064
14.906
A
C9
BAP
10
HETATM
C
C9
BAP
3
1.00
1
C
0.00
-2.603
-3.879
15.198
A
C10
BAP
10
HETATM
C
C10
BAP
3
1.00
1
C
0.00
-3.119
-2.590
15.347
A
C1A
BAP
10
HETATM
C
C1A
BAP
3
1.00
1
C
0.00
-2.282
-1.490
15.243
A
C3B
BAP
10
HETATM
C
C3B
BAP
3
1.00
1
C
0.00
-0.924
-1.667
14.967
A
C5B
BAP
10
HETATM
C
C5B
BAP
3
1.00
1
C
0.00
3.168
-2.296
13.682
A
C1'
BAP
10
HETATM
C
C1'
BAP
3
1.00
1
C
0.00
3.122
-3.263
12.653
A
O1'
BAP
10
HETATM
C
O1'
BAP
3
1.00
1
O
0.00
3.843
-1.049
13.108
A
C2'
BAP
10
HETATM
C
C2'
BAP
3
1.00
1
C
0.00
5.209
-1.304
12.859
A
O2'
BAP
10
HETATM
C
O2'
BAP
3
1.00
1
O
0.00
3.699
0.097
14.104
A
C3'
BAP
10
HETATM
C
C3'
BAP
3
1.00
1
C
0.00
4.262
-0.267
15.349
A
O3'
BAP
10
HETATM
C
O3'
BAP
3
1.00
1
O
0.00
2.213
0.428
14.286
A
C4'
BAP
10
HETATM
C
C4'
BAP
3
1.00
1
C
0.00
-5.160
-3.268
15.672
A
H1
BAP
10
HETATM
C
H1
BAP
3
1.00
1
H
0.00
-6.088
-1.133
15.940
A
H2
BAP
10
HETATM
C
H2
BAP
3
1.00
1
H
0.00
-4.616
0.943
15.777
A
H3
BAP
10
HETATM
C
H3
BAP
3
1.00
1
H
0.00
-2.366
1.898
15.421
A
H4
BAP
10
HETATM
C
H4
BAP
3
1.00
1
H
0.00
-0.013
1.615
15.011
A
H5
BAP
10
HETATM
C
H5
BAP
3
1.00
1
H
0.00
1.288
-4.161
14.315
A
H8
BAP
10
HETATM
C
H8
BAP
3
1.00
1
H
0.00
-0.894
-5.067
14.770
A
H9
BAP
10
HETATM
C
H9
BAP
3
1.00
1
H
0.00
-3.244
-4.724
15.310
A
H10
BAP
10
HETATM
C
H10
BAP
3
1.00
1
H
0.00
3.778
-2.694
14.494
A
H1'
BAP
10
HETATM
C
H1'
BAP
3
1.00
1
H
0.00
4.013
-3.389
12.318
A
HO1
BAP
10
HETATM
C
HO1
BAP
3
1.00
1
H
0.00
3.364
-0.771
12.169
A
H2'
BAP
10
HETATM
C
H2'
BAP
3
1.00
1
H
0.00
5.639
-1.482
13.699
A
HO2
BAP
10
HETATM
C
HO2
BAP
3
1.00
1
H
0.00
4.236
0.971
13.733
A
H3'
BAP
10
HETATM
C
H3'
BAP
3
1.00
1
H
0.00
4.176
0.475
15.950
A
HO3
BAP
10
HETATM
C
HO3
BAP
3
1.00
1
H
0.00
2.153
1.035
15.186
A
H4'1
BAP
10
HETATM
C
H4'1
BAP
3
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yeh, H.J.C.
Sayer, J.M.
Liu, X.
Altieri, A.S.
Byrd, R.A.
Lakshman, M.K.
Yagi, H.
Schurter, E.J.
Gorenstein, D.G.
Jerina, D.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C20 H16 O3
304.339
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
R
C
N
18
N
O
N
19
R
C
N
20
N
O
N
21
R
C
N
22
N
O
N
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
O
N
41
N
P
N
42
N
O
N
43
N
O
N
44
N
O
N
45
N
C
N
46
R
C
N
47
N
O
N
48
S
C
N
49
N
O
N
50
N
C
N
51
R
C
Y
52
N
N
Y
53
N
C
Y
54
N
N
Y
55
N
C
Y
56
N
C
N
57
N
N
Y
58
N
N
Y
59
N
C
Y
60
N
N
Y
61
N
C
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
O
N
77
N
P
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
O
N
84
S
C
N
85
N
O
N
86
N
C
N
87
R
C
N
88
N
N
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
C
N
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
Y
122
N
N
Y
123
N
C
Y
124
N
N
Y
125
N
C
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
C
N
130
N
N
N
131
N
N
Y
132
N
C
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
Y
9
N
sing
Y
10
N
doub
N
11
N
sing
Y
12
N
sing
N
13
N
sing
Y
14
N
doub
Y
15
N
sing
Y
16
N
sing
N
17
N
sing
Y
18
N
doub
N
19
N
sing
Y
20
N
sing
N
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
sing
Y
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
doub
N
76
N
sing
N
77
N
sing
Y
78
N
sing
Y
79
N
doub
N
80
N
sing
Y
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
doub
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
13570
13581
10.1021/bi00041a037
7577946
NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA
1995
10.2210/pdb1dxa/pdb
pdb_00001dxa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA
2780.836
DNA (5'-D(*GP*GP*TP*CP*AP*CP*GP*AP*G)-3')
1
syn
polymer
BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA
2716.787
DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3')
1
syn
polymer
chemically synthesized
304.339
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
1
syn
non-polymer
DEOXYRIBONUCLEIC ACID
DEOXYRIBONUCLEIC ACID
no
no
(DG)(DG)(DT)(DC)(DA)(DC)(DG)(DA)(DG)
GGTCACGAG
A
polydeoxyribonucleotide
no
no
(DC)(DT)(DC)(DG)(DG)(DG)(DA)(DC)(DC)
CTCGGGACC
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
8.126
1
19
A
1
B
9
-1.433
A_DG1:DC9_B
1
-5.923
-0.950
0.123
-0.293
-2.005
1
19
A
2
B
8
-1.499
A_DG2:DC8_B
2
-10.092
-1.004
0.001
-0.354
5.711
1
20
A
3
B
7
1.754
A_DT3:DA7_B
3
-8.808
0.402
-0.015
-0.104
5.815
1
19
A
4
B
6
-1.811
A_DC4:DG6_B
4
-7.584
0.730
0.226
-0.217
41.195
9
A
5
B
5
90.797
A_DA5:DG5_B
5
21.481
-0.021
-1.217
-4.454
-26.293
1
19
A
6
B
4
-2.966
A_DC6:DG4_B
6
2.338
0.560
0.661
-0.086
10.862
1
19
A
7
B
3
3.263
A_DG7:DC3_B
7
-5.893
-1.226
0.223
-0.301
7.669
1
20
A
8
B
2
4.234
A_DA8:DT2_B
8
-13.597
-0.505
-0.130
-0.145
1.349
1
19
A
9
B
1
-2.969
A_DG9:DC1_B
9
-8.773
0.195
-0.174
-0.024
3.375
39.707
A
A
1
2
-0.157
B
B
9
8
3.373
-0.106
0.033
-0.951
AA_DG1DG2:DC8DC9_BB
1
1.027
-1.512
39.694
-1.388
0.075
2.944
41.911
A
A
2
3
4.558
B
B
8
7
2.990
3.257
0.024
-0.509
AA_DG2DT3:DA7DC8_BB
2
0.263
-0.368
41.789
-1.020
-0.008
3.036
33.785
A
A
3
4
8.960
B
B
7
6
3.150
5.186
0.560
-0.376
AA_DT3DC4:DG6DA7_BB
3
-1.244
2.149
33.373
-1.446
-1.154
-0.086
170.390
A
A
4
5
9.661
B
B
6
5
2.146
18.315
-0.267
-3.791
AA_DC4DA5:DG5DG6_BB
4
-169.400
89.354
2.982
-2.011
-0.867
0.254
157.326
A
A
5
6
-43.319
B
B
5
4
-1.793
-80.862
-1.494
-5.703
AA_DA5DC6:DG4DG5_BB
5
127.489
-68.297
76.680
-3.108
0.447
2.216
26.648
A
A
6
7
2.844
B
B
4
3
2.267
1.310
-0.783
-0.554
AA_DC6DG7:DC3DG4_BB
6
0.705
-1.530
26.607
-1.437
1.825
3.197
37.098
A
A
7
8
3.392
B
B
3
2
3.247
2.155
-0.259
-0.387
AA_DG7DA8:DT2DC3_BB
7
2.493
-3.923
36.957
-0.893
0.736
3.196
38.338
A
A
8
9
7.384
B
B
2
1
3.325
4.837
0.361
-0.851
AA_DA8DG9:DC1DT2_BB
8
-0.147
0.224
38.043
-1.901
-0.567
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
entity
pdbx_entity_src_syn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Data collection
Source and taxonomy
Structure summary
1
0
1995-12-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
Y
BNL
1995-09-01
REL
REL
BAP
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
chemically synthesized
sample
chemically synthesized
sample
(+)-(7R,8S,9S,10R)-7,8-DIHYDROXY-9,10-EPOXY-7,8,9,10- TETRAHYDROBENZO[A]PYRENE IS COVALENTLY BONDED TO THE EXOCYCLIC N6 AMINO GROUP OF DEOXYADENOSINE IN THE CENTER OF THE DUPLEX THROUGH TRANS ADDITION AT THE C10 OF THE EPOXIDE.
1
TWO STARTING STRUCTURES WITH BENZO[A]PYRENE MOIETY INSIDE THE DUPLEX AND OUTSIDE THE DUPLEX, RESPECTIVELY, WERE GENERATED BY CONNECTING A STANDARD B-TYPE DNA FRAGMENT WITH A MANUALLY BUILD (+)-DE2-[BAP] FRAGMENT. SOLUTION STRUCTURES FOR THE DUPLEX WERE GENERATED BY RESTRAINTED MOLECULAR DYNAMICS AND RESTRAINTED ENERGY MINIMIZATION USING A SET OF INTER-PROTON DISTANCE RESTRAINTS AND DIHEDRAL ANGLE RESTRAINTS WHICH WERE DERIVED FROM NMR EXPERIMENTS. SOME OF STRUCTURES WITH MINIMUM RESTRAINT VIOLATIONS WERE FURTHER REFINED BY THE ITERATIVE RELAXATION MATRIX ANALYSIS (IRMA) METHOD OVER 111 WELL-SEPARATED CROSS PEAKS IN NOESY SPECTRA RECORDED IN D2O AND MIXING TIMES OF 50, 80, 120, 160 AND 200 MS. THE STRUCTURE PRESENTED HERE WAS ONE OF THE FIVE REFINED AND MINIMIZED STRUCTURES. THE FOLLOWING RESTRAINTS WERE APPLIED IN THE MOLECULAR DYNAMICS/ENERGY MINIMIZATION CALCULATIONS. THESE WERE; (1) INTER-PROTON DISTANCE RESTRAINTS DIRECTLY DERIVED FROM NOE DATA; (2) BACKBONE DIHEDRAL ANGLE RESTRAINTS FOR A STANDARD B-DNA EXCEPT THOSE IMMEDIATELY ADJACENT TO THE MODIFIED RESIDUE; (3) DIHEDRAL ANGLE RESTRAINTS FOR ALL GLYCOSIDIC BONDS, EXCEPT MODIFIED DA RESIDUE IN THE CENTER; (4) HYDROGEN BOND RESTRAINTS (BOTH DISTANCE AND PLANARITY ) FOR ALL BASE-PAIRS EXCEPT CENTRAL DA-DG MISMATCH PAIR. THESE RESTRAINTS WERE JUSTIFIED BY THE FACT THAT THE MODIFIED DUPLEX DISPLAYED CHARACTERISTIC NMR SPECTRA OF A B-DNA EXCEPT NEAR LESION SITE, WHERE THE BAP MOIETY WAS INTERCALATED. THE MODIFIED DA RESIDUE DISPLAYED C3'-ENDO SUGAR RING AND A SYN GLYCOSIDIC BOND. IT ALSO FORMED A NON-WATSON-CRICK BASE PAIR WITH THE OPPOSITE DG.
ENERGY MINIMIZATION, MOLECULAR DYNAMICS
BIOSYM
refinement
NMRCHITECT
BAP
1
3
BAP
BAP
10
A
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
C
4
n
4
DC
4
A
A
5
n
5
DA
5
A
C
6
n
6
DC
6
A
G
7
n
7
DG
7
A
A
8
n
8
DA
8
A
G
9
n
9
DG
9
A
C
1
n
1
DC
1
B
T
2
n
2
DT
2
B
C
3
n
3
DC
3
B
G
4
n
4
DG
4
B
G
5
n
5
DG
5
B
G
6
n
6
DG
6
B
A
7
n
7
DA
7
B
C
8
n
8
DC
8
B
C
9
n
9
DC
9
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
2
0.096
SIDE CHAIN
1
A
DT
3
0.132
SIDE CHAIN
1
A
DA
5
0.082
SIDE CHAIN
1
A
DA
8
0.072
SIDE CHAIN
1
B
DT
2
0.115
SIDE CHAIN
1
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
4.22
0.30
108.30
112.52
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-6.04
0.80
102.40
96.36
A
A
A
C3'
C2'
C1'
DA
DA
DA
5
5
5
N
1
4.22
0.30
108.30
112.52
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
4.26
0.30
108.30
112.56
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
3.87
0.30
108.30
112.17
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-5.12
0.80
102.40
97.28
B
B
B
C3'
C2'
C1'
DC
DC
DC
1
1
1
N
1
5.17
0.30
108.30
113.47
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.37
0.30
108.30
111.67
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
3.36
0.30
108.30
111.67
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
2.91
0.30
108.30
111.21
B
B
B
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
2.37
0.30
108.30
110.67
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
2.29
0.30
108.30
110.59
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA
1
N
N
2
N
N
3
N
N
covale
1.470
none
A
DA
5
A
N6
DA
5
1_555
A
BAP
10
C
C4'
BAP
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
9
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
9
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
9
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
7
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
7
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
6
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
6
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
6
B
N2
DG
6
1_555
hydrog
TYPE_9_PAIR
A
DA
5
A
N6
DA
5
1_555
B
DG
5
B
O6
DG
5
1_555
hydrog
TYPE_9_PAIR
A
DA
5
A
N7
DA
5
1_555
B
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
2
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
2
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
DOUBLE HELIX, BENZO[A]PYRENE DIOL EPOXIDE ADDUCT, DUPLEX DNA, NON-WATSON-CRICK BASE PAIR, DNA
1DXA
PDB
1
1DXA
1DXA
PDB
2
1DXA
1
9
1DXA
1
9
1DXA
A
1
1
9
1
9
1DXA
1
9
1DXA
B
2
1
9
BINDING SITE FOR RESIDUE BAP A 10
A
BAP
10
Software
4
A
DA
5
A
DA
5
4
1_555
A
DC
6
A
DC
6
4
1_555
B
DG
4
B
DG
4
4
1_555
B
DG
5
B
DG
5
4
1_555
1
P 1