0.023708 0.013688 0.000000 0.000000 0.027376 0.000000 0.000000 0.000000 0.013847 0.00000 0.00000 0.00000 Archer, M. Huber, R. Romao, M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 42.180 42.180 72.220 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 R C N 49 N C N 50 N O N 51 N C N 52 N S N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N FE N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N O N 70 N N N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N C N 89 N O N 90 N O N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 N C N 103 N C N 104 N O N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 N C N 119 N C N 120 N C N 121 N C N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N C N 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C N 166 N C N 167 N S N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 R C N 186 N O N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N C Y 205 N C Y 206 N C Y 207 N C Y 208 N C N 209 N O N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing Y 196 N doub Y 197 N sing Y 198 N sing N 199 N sing Y 200 N doub N 201 N sing Y 202 N doub N 203 N sing Y 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 251 690 702 10.1006/jmbi.1995.0465 7666420 Crystal structure of desulforedoxin from Desulfovibrio gigas determined at 1.8 A resolution: a novel non-heme iron protein structure. 1995 10.2210/pdb1dxg/pdb pdb_00001dxg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 269 1 IMAGE PLATE MARRESEARCH GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 3807.350 DESULFOREDOXIN 2 nat polymer 55.845 FE (III) ION 2 syn non-polymer 18.015 water 69 nat water no no ANEGDVYKCELCGQVVKVLEEGGGTLVCCGEDMVKQ ANEGDVYKCELCGQVVKVLEEGGGTLVCCGEDMVKQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ANAEROBIC, SULPHATE REDUCING BACTERIA Desulfovibrio sample 879 Desulfovibrio gigas 1 2.4 50. 4.5 10% PEG 4K, 0.1M SODIUM ACETATE (PH 4.5) chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-11-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-07-04 REL FE FE (III) ION HOH water FE 37 2 FE FE 37 A FE 37 2 FE FE 37 B HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 107 3 HOH HOH 107 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 129 3 HOH HOH 129 A HOH 131 3 HOH HOH 131 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 142 3 HOH HOH 142 A HOH 146 3 HOH HOH 146 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 164 3 HOH HOH 164 A HOH 100 3 HOH HOH 100 B HOH 103 3 HOH HOH 103 B HOH 104 3 HOH HOH 104 B HOH 105 3 HOH HOH 105 B HOH 106 3 HOH HOH 106 B HOH 108 3 HOH HOH 108 B HOH 109 3 HOH HOH 109 B HOH 111 3 HOH HOH 111 B HOH 112 3 HOH HOH 112 B HOH 113 3 HOH HOH 113 B HOH 114 3 HOH HOH 114 B HOH 115 3 HOH HOH 115 B HOH 116 3 HOH HOH 116 B HOH 117 3 HOH HOH 117 B HOH 118 3 HOH HOH 118 B HOH 119 3 HOH HOH 119 B HOH 126 3 HOH HOH 126 B HOH 127 3 HOH HOH 127 B HOH 128 3 HOH HOH 128 B HOH 130 3 HOH HOH 130 B HOH 132 3 HOH HOH 132 B HOH 138 3 HOH HOH 138 B HOH 139 3 HOH HOH 139 B HOH 140 3 HOH HOH 140 B HOH 141 3 HOH HOH 141 B HOH 143 3 HOH HOH 143 B HOH 144 3 HOH HOH 144 B HOH 145 3 HOH HOH 145 B HOH 147 3 HOH HOH 147 B HOH 148 3 HOH HOH 148 B HOH 149 3 HOH HOH 149 B HOH 150 3 HOH HOH 150 B HOH 151 3 HOH HOH 151 B HOH 160 3 HOH HOH 160 B HOH 161 3 HOH HOH 161 B HOH 162 3 HOH HOH 162 B HOH 163 3 HOH HOH 163 B HOH 165 3 HOH HOH 165 B HOH 166 3 HOH HOH 166 B HOH 167 3 HOH HOH 167 B HOH 168 3 HOH HOH 168 B HOH 169 3 HOH HOH 169 B ALA 1 n 1 ALA 1 A ASN 2 n 2 ASN 2 A GLU 3 n 3 GLU 3 A GLY 4 n 4 GLY 4 A ASP 5 n 5 ASP 5 A VAL 6 n 6 VAL 6 A TYR 7 n 7 TYR 7 A LYS 8 n 8 LYS 8 A CYS 9 n 9 CYS 9 A GLU 10 n 10 GLU 10 A LEU 11 n 11 LEU 11 A CYS 12 n 12 CYS 12 A GLY 13 n 13 GLY 13 A GLN 14 n 14 GLN 14 A VAL 15 n 15 VAL 15 A VAL 16 n 16 VAL 16 A LYS 17 n 17 LYS 17 A VAL 18 n 18 VAL 18 A LEU 19 n 19 LEU 19 A GLU 20 n 20 GLU 20 A GLU 21 n 21 GLU 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A THR 25 n 25 THR 25 A LEU 26 n 26 LEU 26 A VAL 27 n 27 VAL 27 A CYS 28 n 28 CYS 28 A CYS 29 n 29 CYS 29 A GLY 30 n 30 GLY 30 A GLU 31 n 31 GLU 31 A ASP 32 n 32 ASP 32 A MET 33 n 33 MET 33 A VAL 34 n 34 VAL 34 A LYS 35 n 35 LYS 35 A GLN 36 n 36 GLN 36 A ALA 1 n 1 ALA 1 B ASN 2 n 2 ASN 2 B GLU 3 n 3 GLU 3 B GLY 4 n 4 GLY 4 B ASP 5 n 5 ASP 5 B VAL 6 n 6 VAL 6 B TYR 7 n 7 TYR 7 B LYS 8 n 8 LYS 8 B CYS 9 n 9 CYS 9 B GLU 10 n 10 GLU 10 B LEU 11 n 11 LEU 11 B CYS 12 n 12 CYS 12 B GLY 13 n 13 GLY 13 B GLN 14 n 14 GLN 14 B VAL 15 n 15 VAL 15 B VAL 16 n 16 VAL 16 B LYS 17 n 17 LYS 17 B VAL 18 n 18 VAL 18 B LEU 19 n 19 LEU 19 B GLU 20 n 20 GLU 20 B GLU 21 n 21 GLU 21 B GLY 22 n 22 GLY 22 B GLY 23 n 23 GLY 23 B GLY 24 n 24 GLY 24 B THR 25 n 25 THR 25 B LEU 26 n 26 LEU 26 B VAL 27 n 27 VAL 27 B CYS 28 n 28 CYS 28 B CYS 29 n 29 CYS 29 B GLY 30 n 30 GLY 30 B GLU 31 n 31 GLU 31 B ASP 32 n 32 ASP 32 B MET 33 n 33 MET 33 B VAL 34 n 34 VAL 34 B LYS 35 n 35 LYS 35 B GLN 36 n 36 GLN 36 B author_and_software_defined_assembly PISA 2 dimeric 1710 -36 3930 A CYS 9 A SG CYS 9 1_555 A FE 37 C FE FE 1_555 A CYS 12 A SG CYS 12 1_555 109.3 A CYS 9 A SG CYS 9 1_555 A FE 37 C FE FE 1_555 A CYS 28 A SG CYS 28 1_555 108.5 A CYS 12 A SG CYS 12 1_555 A FE 37 C FE FE 1_555 A CYS 28 A SG CYS 28 1_555 104.0 A CYS 9 A SG CYS 9 1_555 A FE 37 C FE FE 1_555 A CYS 29 A SG CYS 29 1_555 110.1 A CYS 12 A SG CYS 12 1_555 A FE 37 C FE FE 1_555 A CYS 29 A SG CYS 29 1_555 105.0 A CYS 28 A SG CYS 28 1_555 A FE 37 C FE FE 1_555 A CYS 29 A SG CYS 29 1_555 119.4 B CYS 9 B SG CYS 9 1_555 B FE 37 D FE FE 1_555 B CYS 12 B SG CYS 12 1_555 109.7 B CYS 9 B SG CYS 9 1_555 B FE 37 D FE FE 1_555 B CYS 28 B SG CYS 28 1_555 106.7 B CYS 12 B SG CYS 12 1_555 B FE 37 D FE FE 1_555 B CYS 28 B SG CYS 28 1_555 103.2 B CYS 9 B SG CYS 9 1_555 B FE 37 D FE FE 1_555 B CYS 29 B SG CYS 29 1_555 109.9 B CYS 12 B SG CYS 12 1_555 B FE 37 D FE FE 1_555 B CYS 29 B SG CYS 29 1_555 104.2 B CYS 28 B SG CYS 28 1_555 B FE 37 D FE FE 1_555 B CYS 29 B SG CYS 29 1_555 122.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 7 A O TYR 7 A N VAL 16 A N VAL 16 B O TYR 7 B O TYR 7 B N VAL 16 B N VAL 16 1 A CB ASN 2 A CB ASN 2 0 Y 1 A ND2 ASN 2 A ND2 ASN 2 0 Y 1 A CG GLU 3 A CG GLU 3 0 Y 1 A CD GLU 3 A CD GLU 3 0 Y 1 A OE1 GLU 3 A OE1 GLU 3 0 Y 1 A OE2 GLU 3 A OE2 GLU 3 0 Y 1 A CD GLU 21 A CD GLU 21 0 Y 1 A OE1 GLU 21 A OE1 GLU 21 0 Y 1 A OE2 GLU 21 A OE2 GLU 21 0 Y 1 B CG GLU 3 B CG GLU 3 0 Y 1 B CD GLU 3 B CD GLU 3 0 Y 1 B OE1 GLU 3 B OE1 GLU 3 0 Y 1 B CD GLU 21 B CD GLU 21 0 Y 1 B OE1 GLU 21 B OE1 GLU 21 0 Y 1 B OE2 GLU 21 B OE2 GLU 21 0 Y 14.2 0.1870000 0.1690000 0.1690000 1.8 8.0 785 10346 7.5 94.6 RANDOM 1 R-FREE 2. SIRAS 1.8 8.0 69 665 2 0 594 0.012 2.3 27.3 0.84 3. 5. 3. 5. 0.2640000 0.2190000 1.91 84 972 8 83.7 1.8 11.4 1DXG 6529 0.0830000 1 4.8 94.2 1.83 1.87 82.4 model building PROTEIN refinement X-PLOR 3.1 data reduction MOSFLM data scaling CCP4 phasing PROTEIN CRYSTAL STRUCTURE OF DESULFOREDOXIN FROM DESULFOVIBRIO GIGAS AT 1.8 A RESOLUTION 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N metalc 2.294 A CYS 9 A SG CYS 9 1_555 A FE 37 C FE FE 1_555 metalc 2.256 A CYS 12 A SG CYS 12 1_555 A FE 37 C FE FE 1_555 metalc 2.309 A CYS 28 A SG CYS 28 1_555 A FE 37 C FE FE 1_555 metalc 2.307 A CYS 29 A SG CYS 29 1_555 A FE 37 C FE FE 1_555 metalc 2.278 B CYS 9 B SG CYS 9 1_555 B FE 37 D FE FE 1_555 metalc 2.336 B CYS 12 B SG CYS 12 1_555 B FE 37 D FE FE 1_555 metalc 2.289 B CYS 28 B SG CYS 28 1_555 B FE 37 D FE FE 1_555 metalc 2.273 B CYS 29 B SG CYS 29 1_555 B FE 37 D FE FE 1_555 NON-HEME IRON PROTEIN NON-HEME IRON PROTEIN, RUBREDOXIN TYPE METAL CENTER, ELECTRON TRANSPORT given 0.204527 -0.683513 -0.700699 -0.692437 -0.606992 0.389989 -0.691881 0.405427 -0.597436 24.68513 30.97293 11.82940 DESR_DESGI UNP 1 1 P00273 ANEGDVYKCELCGQVVKVLEEGGGTLVCCGEDMVKQ 1 36 1DXG 1 36 P00273 A 1 1 36 1 36 1DXG 1 36 P00273 B 1 1 36 2 2 anti-parallel anti-parallel A VAL 6 A VAL 6 A LYS 8 A LYS 8 A VAL 15 A VAL 15 A LYS 17 A LYS 17 B VAL 6 B VAL 6 B LYS 8 B LYS 8 B VAL 15 B VAL 15 B LYS 17 B LYS 17 BINDING SITE FOR RESIDUE FE A 37 A FE 37 Software 4 BINDING SITE FOR RESIDUE FE B 37 B FE 37 Software 4 A CYS 9 A CYS 9 4 1_555 A CYS 12 A CYS 12 4 1_555 A CYS 28 A CYS 28 4 1_555 A CYS 29 A CYS 29 4 1_555 B CYS 9 B CYS 9 4 1_555 B CYS 12 B CYS 12 4 1_555 B CYS 28 B CYS 28 4 1_555 B CYS 29 B CYS 29 4 1_555 154 P 32 2 1