0.007457
0.004305
0.000000
0.000000
0.008611
0.000000
0.000000
0.000000
0.007994
0.00000
0.00000
0.00000
Dengler, U.
Niefind, K.
Kiess, M.
Schomburg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
134.100
134.100
125.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H10 O3
130.142
2-OXO-4-METHYLPENTANOIC ACID
alpha-ketoisocaproic acid
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
Y
147
N
C
Y
148
N
N
Y
149
N
C
Y
150
N
C
Y
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
S
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
S
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
S
P
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
C
N
260
R
C
N
261
N
O
N
262
S
C
N
263
N
O
N
264
R
C
N
265
N
O
N
266
R
C
Y
267
N
N
Y
268
N
C
Y
269
N
N
Y
270
N
C
Y
271
N
C
N
272
N
N
Y
273
N
N
Y
274
N
C
Y
275
N
N
Y
276
N
C
N
277
N
O
N
278
N
P
N
279
N
O
N
280
N
O
N
281
N
O
N
282
N
C
N
283
R
C
N
284
N
O
N
285
S
C
N
286
N
O
N
287
R
C
N
288
N
O
N
289
R
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
N
293
N
C
N
294
N
O
N
295
N
N
Y
296
N
C
Y
297
N
C
Y
298
N
C
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
S
N
381
N
O
N
382
N
O
N
383
N
O
N
384
N
O
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
R
C
N
390
N
O
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
N
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
doub
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
N
150
N
sing
Y
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
sing
Y
303
N
doub
Y
304
N
doub
N
305
N
sing
N
306
N
sing
Y
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
267
640
660
10.1006/jmbi.1996.0864
9126843
Crystal structure of a ternary complex of D-2-hydroxyisocaproate dehydrogenase from Lactobacillus casei, NAD+ and 2-oxoisocaproate at 1.9 A resolution.
1997
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
240
400
Crystallization and Preliminary Characterization of Crystals of D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei
1994
Braunschweig : Technische Universitat Braunschweig (Thesis)
GW
Thesis
2131
Roentgenkristallographische Untersuchungen an Drei Mikrobiellen Enzymen: D-2-Hydroxyisocaproat-Dehydrogenase Aus Lactobacillus Casei L-2-Hydroxyisocaproat-Dehydrogenase Aus Lactobacillus Confusus Alkalische Protease Aus Bacillus Alcalophilus/Variante Q59R
1993
US
ENZYME.MICROB.TECHNOL.
0141-0229
14
28
Potential of R-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei for Stereospecific Reductions
1992
NE
Gene
GENED6
0861
0378-1119
78
47
Cloning, Sequencing and Expression in Escherichia Coli of the D-2-Hydroxyisocaproate Dehydrogenase Gene of Lactobacillus Casei
1989
NE
Fems Microbiol.Lett.
FMLED7
2102
0378-1097
43
263
Crystallization and Molecular Properties of D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei
1987
GW
Appl.Microbiol.Biotechnol.
AMBIDG
0786
0175-7598
21
7
D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei. A New Enzyme Suitable for Stereospecific Reduction of 2-Ketocarboxylic Acids
1985
10.2210/pdb1dxy/pdb
pdb_00001dxy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
MIRROR OPTICS
IMAGE PLATE
1994-08-01
MAR scanner 300 mm plate
SI(111)
M
x-ray
1
1.1
1.0
BW6
MPG/DESY, HAMBURG
1.1
SYNCHROTRON
MPG/DESY, HAMBURG BEAMLINE BW6
36929.840
D-2-HYDROXYISOCAPROATE DEHYDROGENASE
1.1.1.-
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
syn
non-polymer
130.142
2-OXO-4-METHYLPENTANOIC ACID
1
syn
non-polymer
18.015
water
182
nat
water
D-HICDH, R-HICDH, R-2-HYDROXYISOCAPROATE DEHYDROGENASE
no
no
MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD
NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA
IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT
QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT
KGETSTEVTGPAK
MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD
NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA
IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT
QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT
KGETSTEVTGPAK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lactobacillus
Escherichia
sample
POTENTIAL
1582
Lactobacillus casei
SSP. PSEUDOPLANTARUM
562
Escherichia coli
PJLA601
3
4.4
72.0
7.0
1.9 M AMMONIUM SULFATE, 50 MM CITRATE/PHOSPHATE BUFFER, 30 MM NAD+, 60 MM 4-METHYL-2-OXOPENTANOATE, PH 7.0, 277 K; ENZYME CONCENTRATION 10 MG/ML.
277
database_2
pdbx_database_status
pdbx_initial_refinement_model
software
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Atomic model
Derived calculations
Database references
Other
Refinement description
Data collection
1
0
1997-06-16
1
1
2008-03-24
1
2
2011-07-13
1
3
2011-11-16
1
4
2017-03-15
1
5
2023-08-09
1
6
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_software.name
Y
BNL
1996-08-13
REL
REL
SO4
SULFATE ION
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
COI
2-OXO-4-METHYLPENTANOIC ACID
HOH
water
2-OXOISOCAPROATE (OIC 337) AND A SULFATE ION (SO4 338) ARE
MUTUALLY EXCLUSIVELY BOUND IN THE ACTIVE SITE. THE
OCCUPANCY FACTORS OF BOTH LIGANDS WERE SET TO 0.5, WHILE
DIFFERENCES IN OCCUPATION WERE SIMULATED BY TEMPERATURE
FACTOR REFINEMENT.
A CONTACT IS OBSERVED BETWEEN THE SIDE CHAINS OF ASP 266
AND ASP 278. CHEMICAL PROTEIN SEQUENCING CONFIRMED THESE
RESIDUES TO BE ASPARTATES.
1GDH
BACKBONE AND C-BETA ATOMS OF D-GLYCERATE DEHYDROGENASE (PDB ENTRY 1GDH)
PDB
experimental model
SO4
338
2
SO4
SO4
401
A
SO4
339
2
SO4
SO4
402
A
NAD
336
3
NAD
NAD
403
A
COI
337
4
COI
COI
404
A
HOH
340
5
HOH
HOH
501
A
HOH
341
5
HOH
HOH
502
A
HOH
342
5
HOH
HOH
503
A
HOH
343
5
HOH
HOH
504
A
HOH
344
5
HOH
HOH
505
A
HOH
345
5
HOH
HOH
506
A
HOH
346
5
HOH
HOH
507
A
HOH
347
5
HOH
HOH
508
A
HOH
348
5
HOH
HOH
509
A
HOH
349
5
HOH
HOH
510
A
HOH
350
5
HOH
HOH
511
A
HOH
351
5
HOH
HOH
512
A
HOH
352
5
HOH
HOH
513
A
HOH
353
5
HOH
HOH
514
A
HOH
354
5
HOH
HOH
515
A
HOH
355
5
HOH
HOH
516
A
HOH
356
5
HOH
HOH
517
A
HOH
357
5
HOH
HOH
518
A
HOH
358
5
HOH
HOH
519
A
HOH
359
5
HOH
HOH
520
A
HOH
360
5
HOH
HOH
521
A
HOH
361
5
HOH
HOH
522
A
HOH
362
5
HOH
HOH
523
A
HOH
363
5
HOH
HOH
524
A
HOH
364
5
HOH
HOH
525
A
HOH
365
5
HOH
HOH
526
A
HOH
366
5
HOH
HOH
527
A
HOH
367
5
HOH
HOH
528
A
HOH
368
5
HOH
HOH
529
A
HOH
369
5
HOH
HOH
530
A
HOH
370
5
HOH
HOH
531
A
HOH
371
5
HOH
HOH
532
A
HOH
372
5
HOH
HOH
533
A
HOH
373
5
HOH
HOH
534
A
HOH
374
5
HOH
HOH
535
A
HOH
375
5
HOH
HOH
536
A
HOH
376
5
HOH
HOH
537
A
HOH
377
5
HOH
HOH
538
A
HOH
378
5
HOH
HOH
539
A
HOH
379
5
HOH
HOH
540
A
HOH
380
5
HOH
HOH
541
A
HOH
381
5
HOH
HOH
542
A
HOH
382
5
HOH
HOH
543
A
HOH
383
5
HOH
HOH
544
A
HOH
384
5
HOH
HOH
545
A
HOH
385
5
HOH
HOH
546
A
HOH
386
5
HOH
HOH
547
A
HOH
387
5
HOH
HOH
548
A
HOH
388
5
HOH
HOH
549
A
HOH
389
5
HOH
HOH
550
A
HOH
390
5
HOH
HOH
551
A
HOH
391
5
HOH
HOH
552
A
HOH
392
5
HOH
HOH
553
A
HOH
393
5
HOH
HOH
554
A
HOH
394
5
HOH
HOH
555
A
HOH
395
5
HOH
HOH
556
A
HOH
396
5
HOH
HOH
557
A
HOH
397
5
HOH
HOH
558
A
HOH
398
5
HOH
HOH
559
A
HOH
399
5
HOH
HOH
560
A
HOH
400
5
HOH
HOH
561
A
HOH
401
5
HOH
HOH
562
A
HOH
402
5
HOH
HOH
563
A
HOH
403
5
HOH
HOH
564
A
HOH
404
5
HOH
HOH
565
A
HOH
405
5
HOH
HOH
566
A
HOH
406
5
HOH
HOH
567
A
HOH
407
5
HOH
HOH
568
A
HOH
408
5
HOH
HOH
569
A
HOH
409
5
HOH
HOH
570
A
HOH
410
5
HOH
HOH
571
A
HOH
411
5
HOH
HOH
572
A
HOH
412
5
HOH
HOH
573
A
HOH
413
5
HOH
HOH
574
A
HOH
414
5
HOH
HOH
575
A
HOH
415
5
HOH
HOH
576
A
HOH
416
5
HOH
HOH
577
A
HOH
417
5
HOH
HOH
578
A
HOH
418
5
HOH
HOH
579
A
HOH
419
5
HOH
HOH
580
A
HOH
420
5
HOH
HOH
581
A
HOH
421
5
HOH
HOH
582
A
HOH
422
5
HOH
HOH
583
A
HOH
423
5
HOH
HOH
584
A
HOH
424
5
HOH
HOH
585
A
HOH
425
5
HOH
HOH
586
A
HOH
426
5
HOH
HOH
587
A
HOH
427
5
HOH
HOH
588
A
HOH
428
5
HOH
HOH
589
A
HOH
429
5
HOH
HOH
590
A
HOH
430
5
HOH
HOH
591
A
HOH
431
5
HOH
HOH
592
A
HOH
432
5
HOH
HOH
593
A
HOH
433
5
HOH
HOH
594
A
HOH
434
5
HOH
HOH
595
A
HOH
435
5
HOH
HOH
596
A
HOH
436
5
HOH
HOH
597
A
HOH
437
5
HOH
HOH
598
A
HOH
438
5
HOH
HOH
599
A
HOH
439
5
HOH
HOH
600
A
HOH
440
5
HOH
HOH
601
A
HOH
441
5
HOH
HOH
602
A
HOH
442
5
HOH
HOH
603
A
HOH
443
5
HOH
HOH
604
A
HOH
444
5
HOH
HOH
605
A
HOH
445
5
HOH
HOH
606
A
HOH
446
5
HOH
HOH
607
A
HOH
447
5
HOH
HOH
608
A
HOH
448
5
HOH
HOH
609
A
HOH
449
5
HOH
HOH
610
A
HOH
450
5
HOH
HOH
611
A
HOH
451
5
HOH
HOH
612
A
HOH
452
5
HOH
HOH
613
A
HOH
453
5
HOH
HOH
614
A
HOH
454
5
HOH
HOH
615
A
HOH
455
5
HOH
HOH
616
A
HOH
456
5
HOH
HOH
617
A
HOH
457
5
HOH
HOH
618
A
HOH
458
5
HOH
HOH
619
A
HOH
459
5
HOH
HOH
620
A
HOH
460
5
HOH
HOH
621
A
HOH
461
5
HOH
HOH
622
A
HOH
462
5
HOH
HOH
623
A
HOH
463
5
HOH
HOH
624
A
HOH
464
5
HOH
HOH
625
A
HOH
465
5
HOH
HOH
626
A
HOH
466
5
HOH
HOH
627
A
HOH
467
5
HOH
HOH
628
A
HOH
468
5
HOH
HOH
629
A
HOH
469
5
HOH
HOH
630
A
HOH
470
5
HOH
HOH
631
A
HOH
471
5
HOH
HOH
632
A
HOH
472
5
HOH
HOH
633
A
HOH
473
5
HOH
HOH
634
A
HOH
474
5
HOH
HOH
635
A
HOH
475
5
HOH
HOH
636
A
HOH
476
5
HOH
HOH
637
A
HOH
477
5
HOH
HOH
638
A
HOH
478
5
HOH
HOH
639
A
HOH
479
5
HOH
HOH
640
A
HOH
480
5
HOH
HOH
641
A
HOH
481
5
HOH
HOH
642
A
HOH
482
5
HOH
HOH
643
A
HOH
483
5
HOH
HOH
644
A
HOH
484
5
HOH
HOH
645
A
HOH
485
5
HOH
HOH
646
A
HOH
486
5
HOH
HOH
647
A
HOH
487
5
HOH
HOH
648
A
HOH
488
5
HOH
HOH
649
A
HOH
489
5
HOH
HOH
650
A
HOH
490
5
HOH
HOH
651
A
HOH
491
5
HOH
HOH
652
A
HOH
492
5
HOH
HOH
653
A
HOH
493
5
HOH
HOH
654
A
HOH
494
5
HOH
HOH
655
A
HOH
495
5
HOH
HOH
656
A
HOH
496
5
HOH
HOH
657
A
HOH
497
5
HOH
HOH
658
A
HOH
498
5
HOH
HOH
659
A
HOH
499
5
HOH
HOH
660
A
HOH
500
5
HOH
HOH
661
A
HOH
501
5
HOH
HOH
662
A
HOH
502
5
HOH
HOH
663
A
HOH
503
5
HOH
HOH
664
A
HOH
504
5
HOH
HOH
665
A
HOH
505
5
HOH
HOH
666
A
HOH
506
5
HOH
HOH
667
A
HOH
507
5
HOH
HOH
668
A
HOH
508
5
HOH
HOH
669
A
HOH
509
5
HOH
HOH
670
A
HOH
510
5
HOH
HOH
671
A
HOH
511
5
HOH
HOH
672
A
HOH
512
5
HOH
HOH
673
A
HOH
513
5
HOH
HOH
674
A
HOH
514
5
HOH
HOH
675
A
HOH
515
5
HOH
HOH
676
A
HOH
516
5
HOH
HOH
677
A
HOH
517
5
HOH
HOH
678
A
HOH
518
5
HOH
HOH
679
A
HOH
519
5
HOH
HOH
680
A
HOH
520
5
HOH
HOH
681
A
HOH
521
5
HOH
HOH
682
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ILE
3
n
3
ILE
3
A
ILE
4
n
4
ILE
4
A
ALA
5
n
5
ALA
5
A
TYR
6
n
6
TYR
6
A
GLY
7
n
7
GLY
7
A
ALA
8
n
8
ALA
8
A
ARG
9
n
9
ARG
9
A
VAL
10
n
10
VAL
10
A
ASP
11
n
11
ASP
11
A
GLU
12
n
12
GLU
12
A
ILE
13
n
13
ILE
13
A
GLN
14
n
14
GLN
14
A
TYR
15
n
15
TYR
15
A
PHE
16
n
16
PHE
16
A
LYS
17
n
17
LYS
17
A
GLN
18
n
18
GLN
18
A
TRP
19
n
19
TRP
19
A
ALA
20
n
20
ALA
20
A
LYS
21
n
21
LYS
21
A
ASP
22
n
22
ASP
22
A
THR
23
n
23
THR
23
A
GLY
24
n
24
GLY
24
A
ASN
25
n
25
ASN
25
A
THR
26
n
26
THR
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
TYR
29
n
29
TYR
29
A
HIS
30
n
30
HIS
30
A
THR
31
n
31
THR
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
LEU
34
n
34
LEU
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
ASN
37
n
37
ASN
37
A
THR
38
n
38
THR
38
A
VAL
39
n
39
VAL
39
A
GLU
40
n
40
GLU
40
A
TRP
41
n
41
TRP
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ASP
46
n
46
ASP
46
A
GLY
47
n
47
GLY
47
A
ILE
48
n
48
ILE
48
A
ASN
49
n
49
ASN
49
A
SER
50
n
50
SER
50
A
LEU
51
n
51
LEU
51
A
GLN
52
n
52
GLN
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
PRO
55
n
55
PRO
55
A
TYR
56
n
56
TYR
56
A
ALA
57
n
57
ALA
57
A
ALA
58
n
58
ALA
58
A
GLY
59
n
59
GLY
59
A
VAL
60
n
60
VAL
60
A
PHE
61
n
61
PHE
61
A
GLU
62
n
62
GLU
62
A
LYS
63
n
63
LYS
63
A
MET
64
n
64
MET
64
A
HIS
65
n
65
HIS
65
A
ALA
66
n
66
ALA
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
ILE
69
n
69
ILE
69
A
LYS
70
n
70
LYS
70
A
PHE
71
n
71
PHE
71
A
LEU
72
n
72
LEU
72
A
THR
73
n
73
THR
73
A
ILE
74
n
74
ILE
74
A
ARG
75
n
75
ARG
75
A
ASN
76
n
76
ASN
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
THR
79
n
79
THR
79
A
ASP
80
n
80
ASP
80
A
ASN
81
n
81
ASN
81
A
ILE
82
n
82
ILE
82
A
ASP
83
n
83
ASP
83
A
MET
84
n
84
MET
84
A
THR
85
n
85
THR
85
A
ALA
86
n
86
ALA
86
A
MET
87
n
87
MET
87
A
LYS
88
n
88
LYS
88
A
GLN
89
n
89
GLN
89
A
TYR
90
n
90
TYR
90
A
GLY
91
n
91
GLY
91
A
ILE
92
n
92
ILE
92
A
ARG
93
n
93
ARG
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
ASN
96
n
96
ASN
96
A
VAL
97
n
97
VAL
97
A
PRO
98
n
98
PRO
98
A
ALA
99
n
99
ALA
99
A
TYR
100
n
100
TYR
100
A
SER
101
n
101
SER
101
A
PRO
102
n
102
PRO
102
A
ALA
103
n
103
ALA
103
A
ALA
104
n
104
ALA
104
A
ILE
105
n
105
ILE
105
A
ALA
106
n
106
ALA
106
A
GLU
107
n
107
GLU
107
A
PHE
108
n
108
PHE
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
THR
111
n
111
THR
111
A
ASP
112
n
112
ASP
112
A
THR
113
n
113
THR
113
A
LEU
114
n
114
LEU
114
A
TYR
115
n
115
TYR
115
A
LEU
116
n
116
LEU
116
A
LEU
117
n
117
LEU
117
A
ARG
118
n
118
ARG
118
A
ASN
119
n
119
ASN
119
A
MET
120
n
120
MET
120
A
GLY
121
n
121
GLY
121
A
LYS
122
n
122
LYS
122
A
VAL
123
n
123
VAL
123
A
GLN
124
n
124
GLN
124
A
ALA
125
n
125
ALA
125
A
GLN
126
n
126
GLN
126
A
LEU
127
n
127
LEU
127
A
GLN
128
n
128
GLN
128
A
ALA
129
n
129
ALA
129
A
GLY
130
n
130
GLY
130
A
ASP
131
n
131
ASP
131
A
TYR
132
n
132
TYR
132
A
GLU
133
n
133
GLU
133
A
LYS
134
n
134
LYS
134
A
ALA
135
n
135
ALA
135
A
GLY
136
n
136
GLY
136
A
THR
137
n
137
THR
137
A
PHE
138
n
138
PHE
138
A
ILE
139
n
139
ILE
139
A
GLY
140
n
140
GLY
140
A
LYS
141
n
141
LYS
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
GLY
144
n
144
GLY
144
A
GLN
145
n
145
GLN
145
A
GLN
146
n
146
GLN
146
A
THR
147
n
147
THR
147
A
VAL
148
n
148
VAL
148
A
GLY
149
n
149
GLY
149
A
VAL
150
n
150
VAL
150
A
MET
151
n
151
MET
151
A
GLY
152
n
152
GLY
152
A
THR
153
n
153
THR
153
A
GLY
154
n
154
GLY
154
A
HIS
155
n
155
HIS
155
A
ILE
156
n
156
ILE
156
A
GLY
157
n
157
GLY
157
A
GLN
158
n
158
GLN
158
A
VAL
159
n
159
VAL
159
A
ALA
160
n
160
ALA
160
A
ILE
161
n
161
ILE
161
A
LYS
162
n
162
LYS
162
A
LEU
163
n
163
LEU
163
A
PHE
164
n
164
PHE
164
A
LYS
165
n
165
LYS
165
A
GLY
166
n
166
GLY
166
A
PHE
167
n
167
PHE
167
A
GLY
168
n
168
GLY
168
A
ALA
169
n
169
ALA
169
A
LYS
170
n
170
LYS
170
A
VAL
171
n
171
VAL
171
A
ILE
172
n
172
ILE
172
A
ALA
173
n
173
ALA
173
A
TYR
174
n
174
TYR
174
A
ASP
175
n
175
ASP
175
A
PRO
176
n
176
PRO
176
A
TYR
177
n
177
TYR
177
A
PRO
178
n
178
PRO
178
A
MET
179
n
179
MET
179
A
LYS
180
n
180
LYS
180
A
GLY
181
n
181
GLY
181
A
ASP
182
n
182
ASP
182
A
HIS
183
n
183
HIS
183
A
PRO
184
n
184
PRO
184
A
ASP
185
n
185
ASP
185
A
PHE
186
n
186
PHE
186
A
ASP
187
n
187
ASP
187
A
TYR
188
n
188
TYR
188
A
VAL
189
n
189
VAL
189
A
SER
190
n
190
SER
190
A
LEU
191
n
191
LEU
191
A
GLU
192
n
192
GLU
192
A
ASP
193
n
193
ASP
193
A
LEU
194
n
194
LEU
194
A
PHE
195
n
195
PHE
195
A
LYS
196
n
196
LYS
196
A
GLN
197
n
197
GLN
197
A
SER
198
n
198
SER
198
A
ASP
199
n
199
ASP
199
A
VAL
200
n
200
VAL
200
A
ILE
201
n
201
ILE
201
A
ASP
202
n
202
ASP
202
A
LEU
203
n
203
LEU
203
A
HIS
204
n
204
HIS
204
A
VAL
205
n
205
VAL
205
A
PRO
206
n
206
PRO
206
A
GLY
207
n
207
GLY
207
A
ILE
208
n
208
ILE
208
A
GLU
209
n
209
GLU
209
A
GLN
210
n
210
GLN
210
A
ASN
211
n
211
ASN
211
A
THR
212
n
212
THR
212
A
HIS
213
n
213
HIS
213
A
ILE
214
n
214
ILE
214
A
ILE
215
n
215
ILE
215
A
ASN
216
n
216
ASN
216
A
GLU
217
n
217
GLU
217
A
ALA
218
n
218
ALA
218
A
ALA
219
n
219
ALA
219
A
PHE
220
n
220
PHE
220
A
ASN
221
n
221
ASN
221
A
LEU
222
n
222
LEU
222
A
MET
223
n
223
MET
223
A
LYS
224
n
224
LYS
224
A
PRO
225
n
225
PRO
225
A
GLY
226
n
226
GLY
226
A
ALA
227
n
227
ALA
227
A
ILE
228
n
228
ILE
228
A
VAL
229
n
229
VAL
229
A
ILE
230
n
230
ILE
230
A
ASN
231
n
231
ASN
231
A
THR
232
n
232
THR
232
A
ALA
233
n
233
ALA
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ASN
236
n
236
ASN
236
A
LEU
237
n
237
LEU
237
A
ILE
238
n
238
ILE
238
A
ASP
239
n
239
ASP
239
A
THR
240
n
240
THR
240
A
GLN
241
n
241
GLN
241
A
ALA
242
n
242
ALA
242
A
MET
243
n
243
MET
243
A
LEU
244
n
244
LEU
244
A
SER
245
n
245
SER
245
A
ASN
246
n
246
ASN
246
A
LEU
247
n
247
LEU
247
A
LYS
248
n
248
LYS
248
A
SER
249
n
249
SER
249
A
GLY
250
n
250
GLY
250
A
LYS
251
n
251
LYS
251
A
LEU
252
n
252
LEU
252
A
ALA
253
n
253
ALA
253
A
GLY
254
n
254
GLY
254
A
VAL
255
n
255
VAL
255
A
GLY
256
n
256
GLY
256
A
ILE
257
n
257
ILE
257
A
ASP
258
n
258
ASP
258
A
THR
259
n
259
THR
259
A
TYR
260
n
260
TYR
260
A
GLU
261
n
261
GLU
261
A
TYR
262
n
262
TYR
262
A
GLU
263
n
263
GLU
263
A
THR
264
n
264
THR
264
A
GLU
265
n
265
GLU
265
A
ASP
266
n
266
ASP
266
A
LEU
267
n
267
LEU
267
A
LEU
268
n
268
LEU
268
A
ASN
269
n
269
ASN
269
A
LEU
270
n
270
LEU
270
A
ALA
271
n
271
ALA
271
A
LYS
272
n
272
LYS
272
A
HIS
273
n
273
HIS
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
PHE
276
n
276
PHE
276
A
LYS
277
n
277
LYS
277
A
ASP
278
n
278
ASP
278
A
PRO
279
n
279
PRO
279
A
LEU
280
n
280
LEU
280
A
TRP
281
n
281
TRP
281
A
ASP
282
n
282
ASP
282
A
GLU
283
n
283
GLU
283
A
LEU
284
n
284
LEU
284
A
LEU
285
n
285
LEU
285
A
GLY
286
n
286
GLY
286
A
MET
287
n
287
MET
287
A
PRO
288
n
288
PRO
288
A
ASN
289
n
289
ASN
289
A
VAL
290
n
290
VAL
290
A
VAL
291
n
291
VAL
291
A
LEU
292
n
292
LEU
292
A
SER
293
n
293
SER
293
A
PRO
294
n
294
PRO
294
A
HIS
295
n
295
HIS
295
A
ILE
296
n
296
ILE
296
A
ALA
297
n
297
ALA
297
A
TYR
298
n
298
TYR
298
A
TYR
299
n
299
TYR
299
A
THR
300
n
300
THR
300
A
GLU
301
n
301
GLU
301
A
THR
302
n
302
THR
302
A
ALA
303
n
303
ALA
303
A
VAL
304
n
304
VAL
304
A
HIS
305
n
305
HIS
305
A
ASN
306
n
306
ASN
306
A
MET
307
n
307
MET
307
A
VAL
308
n
308
VAL
308
A
TYR
309
n
309
TYR
309
A
PHE
310
n
310
PHE
310
A
SER
311
n
311
SER
311
A
LEU
312
n
312
LEU
312
A
GLN
313
n
313
GLN
313
A
HIS
314
n
314
HIS
314
A
LEU
315
n
315
LEU
315
A
VAL
316
n
316
VAL
316
A
ASP
317
n
317
ASP
317
A
PHE
318
n
318
PHE
318
A
LEU
319
n
319
LEU
319
A
THR
320
n
320
THR
320
A
LYS
321
n
321
LYS
321
A
GLY
322
n
322
GLY
322
A
GLU
323
n
323
GLU
323
A
THR
324
n
324
THR
324
A
SER
325
n
325
SER
325
A
THR
326
n
326
THR
326
A
GLU
327
n
327
GLU
327
A
VAL
328
n
328
VAL
328
A
THR
329
n
329
THR
329
A
GLY
330
n
330
GLY
330
A
n
331
331
A
n
332
332
A
n
333
333
A
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA,PQS
6
hexameric
8770
-103
26670
34670
-342
71660
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_554
x,x-y,-z-1/2
crystal symmetry operation
0.0000000000
0.0000000000
-62.5500000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
134.1000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
67.0500000000
116.1340066475
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_664
-y+1,-x+1,-z-1/2
crystal symmetry operation
67.0500000000
116.1340066475
-62.5500000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_654
-x+y+1,y,-z-1/2
crystal symmetry operation
134.1000000000
0.0000000000
-62.5500000000
A
O
THR
26
A
O
THR
26
A
N
ILE
3
A
N
ILE
3
A
O
ILE
4
A
O
ILE
4
A
N
GLY
47
A
N
GLY
47
A
O
ILE
48
A
O
ILE
48
A
N
THR
73
A
N
THR
73
A
O
LEU
72
A
O
LEU
72
A
N
ARG
93
A
N
ARG
93
A
O
LYS
170
A
O
LYS
170
A
N
VAL
148
A
N
VAL
148
A
O
GLY
149
A
O
GLY
149
A
N
VAL
200
A
N
VAL
200
A
O
ILE
201
A
O
ILE
201
A
N
ILE
228
A
N
ILE
228
A
O
ALA
227
A
O
ALA
227
A
N
ALA
253
A
N
ALA
253
A
O
VAL
255
A
O
VAL
255
A
N
VAL
291
A
N
VAL
291
1
A
HOH
543
F
HOH
1
A
HOH
545
F
HOH
1
A
CE
LYS
2
A
CE
LYS
2
0
Y
1
A
NZ
LYS
2
A
NZ
LYS
2
0
Y
1
A
CE
LYS
21
A
CE
LYS
21
0
Y
1
A
NZ
LYS
21
A
NZ
LYS
21
0
Y
1
A
CG
LYS
43
A
CG
LYS
43
0
Y
1
A
CD
LYS
43
A
CD
LYS
43
0
Y
1
A
CE
LYS
43
A
CE
LYS
43
0
Y
1
A
NZ
LYS
43
A
NZ
LYS
43
0
Y
1
A
CG
LYS
70
A
CG
LYS
70
0
Y
1
A
CD
LYS
70
A
CD
LYS
70
0
Y
1
A
CE
LYS
70
A
CE
LYS
70
0
Y
1
A
NZ
LYS
70
A
NZ
LYS
70
0
Y
1
A
CG
LYS
88
A
CG
LYS
88
0
Y
1
A
CD
LYS
88
A
CD
LYS
88
0
Y
1
A
CE
LYS
88
A
CE
LYS
88
0
Y
1
A
NZ
LYS
88
A
NZ
LYS
88
0
Y
1
A
CD
LYS
180
A
CD
LYS
180
0
Y
1
A
CE
LYS
180
A
CE
LYS
180
0
Y
1
A
NZ
LYS
180
A
NZ
LYS
180
0
Y
1
A
CG
GLU
209
A
CG
GLU
209
0
Y
1
A
CD
GLU
209
A
CD
GLU
209
0
Y
1
A
OE1
GLU
209
A
OE1
GLU
209
0
Y
1
A
OE2
GLU
209
A
OE2
GLU
209
0
Y
1
A
CD
LYS
321
A
CD
LYS
321
0
Y
1
A
CE
LYS
321
A
CE
LYS
321
0
Y
1
A
NZ
LYS
321
A
NZ
LYS
321
0
Y
1
A
CG
GLU
323
A
CG
GLU
323
0
Y
1
A
CD
GLU
323
A
CD
GLU
323
0
Y
1
A
OE1
GLU
323
A
OE1
GLU
323
0
Y
1
A
OE2
GLU
323
A
OE2
GLU
323
0
Y
1
A
PRO
331
A
PRO
331
1
Y
1
A
ALA
332
A
ALA
332
1
Y
1
A
LYS
333
A
LYS
333
1
Y
1
A
ASN
76
-115.43
-166.41
1
A
ALA
99
-140.42
59.92
1
A
SER
101
-165.13
88.51
1
A
THR
153
-109.38
46.33
1
A
HIS
183
-163.66
83.59
1
A
HIS
204
-141.87
47.73
1
A
ASN
216
-124.76
-169.56
1
A
ALA
233
-89.63
-83.74
1
A
TYR
299
-68.55
72.51
31.02
0.2170000
0.1960000
0.1960000
1.86
12.1
53838
5.00
96.5
1
0.0
MOLECULAR REPLACEMENT
BACKBONE AND C-BETA ATOMS OF D-GLYCERATE DEHYDROGENASE (PDB ENTRY 1GDH)
0.23
0.28
1.86
12.1
182
2825
63
0
2580
0.009
1.73
23.12
1.25
1.86
12.1
1DXY
53838
0.0
0.0890000
1
22.2
5.8
96.5
1.86
2.0
2.8
0.4800000
1
4.4
86.9
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
MOSFLM
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
phasing
X-PLOR
3.1
STRUCTURE OF D-2-HYDROXYISOCAPROATE DEHYDROGENASE
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
D-HICDH IS A DIMER OF IDENTICAL SUBUNITS, WHICH OCCUPIES
A SPECIAL POSITION IN THE INVESTIGATED CRYSTALS.
A
VAL
10
A
VAL
10
HELX_P
A
THR
23
A
THR
23
5
1
14
A
THR
38
A
THR
38
HELX_P
A
ALA
42
A
ALA
42
5
2
5
A
ALA
58
A
ALA
58
HELX_P
A
TYR
67
A
TYR
67
1
3
10
A
MET
84
A
MET
84
HELX_P
A
GLN
89
A
GLN
89
1
4
6
A
PRO
102
A
PRO
102
HELX_P
A
LEU
117
A
LEU
117
1
5
16
A
MET
120
A
MET
120
HELX_P
A
GLN
128
A
GLN
128
1
6
9
A
TYR
132
A
TYR
132
HELX_P
A
GLY
136
A
GLY
136
1
7
5
A
LEU
143
A
LEU
143
HELX_P
A
GLN
145
A
GLN
145
5
8
3
A
HIS
155
A
HIS
155
HELX_P
A
PHE
167
A
PHE
167
1
9
13
A
LEU
191
A
LEU
191
HELX_P
A
GLN
197
A
GLN
197
1
10
7
A
GLU
209
A
GLU
209
HELX_P
A
ASN
211
A
ASN
211
5
11
3
A
GLU
217
A
GLU
217
HELX_P
A
LEU
222
A
LEU
222
1
12
6
A
THR
240
A
THR
240
HELX_P
A
LYS
248
A
LYS
248
1
13
9
A
GLU
263
A
GLU
263
HELX_P
A
HIS
273
A
HIS
273
1
14
11
A
PRO
279
A
PRO
279
HELX_P
A
LEU
285
A
LEU
285
1
15
7
A
GLU
301
A
GLU
301
HELX_P
A
LYS
321
A
LYS
321
1
16
21
OXIDOREDUCTASE
D-2-HYDROXYCARBOXYLATE DEHYDROGENASE, D-LACTATE DEHYDROGENASE, OXIDOREDUCTASE
DHD2_LACPA
UNP
1
1
P17584
MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD
NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA
IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT
QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT
KGETSTEVTGPAK
1
333
1DXY
1
333
P17584
A
1
1
333
5
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
THR
26
A
THR
26
A
TYR
29
A
TYR
29
A
LYS
2
A
LYS
2
A
ALA
5
A
ALA
5
A
GLY
47
A
GLY
47
A
SER
50
A
SER
50
A
PHE
71
A
PHE
71
A
ILE
74
A
ILE
74
A
ARG
93
A
ARG
93
A
SER
95
A
SER
95
A
LYS
170
A
LYS
170
A
TYR
174
A
TYR
174
A
THR
147
A
THR
147
A
MET
151
A
MET
151
A
VAL
200
A
VAL
200
A
LEU
203
A
LEU
203
A
ALA
227
A
ALA
227
A
ASN
231
A
ASN
231
A
LEU
252
A
LEU
252
A
ILE
257
A
ILE
257
A
VAL
290
A
VAL
290
A
LEU
292
A
LEU
292
ACTIVE SITE.
Unknown
7
BINDING SITE FOR RESIDUE SO4 A 338
Software
6
BINDING SITE FOR RESIDUE SO4 A 339
Software
6
BINDING SITE FOR RESIDUE NAD A 336
Software
26
BINDING SITE FOR RESIDUE COI A 337
Software
7
A
VAL
77
A
VAL
77
7
1_555
A
GLY
78
A
GLY
78
7
1_555
A
TYR
100
A
TYR
100
7
1_555
A
THR
232
A
THR
232
7
1_555
A
ARG
234
A
ARG
234
7
1_555
A
GLU
263
A
GLU
263
7
1_555
A
HIS
295
A
HIS
295
7
1_555
A
ASN
76
A
ASN
76
6
1_555
A
VAL
77
A
VAL
77
6
1_555
A
GLY
78
A
GLY
78
6
1_555
A
TYR
100
A
TYR
100
6
1_555
A
ARG
234
A
ARG
234
6
1_555
A
COI
404
E
COI
6
1_555
A
PRO
98
A
PRO
98
6
1_555
A
ALA
99
A
ALA
99
6
1_555
A
PHE
310
A
PHE
310
6
1_555
A
HIS
314
A
HIS
314
6
1_555
A
THR
326
A
THR
326
6
1_555
A
HOH
653
F
HOH
6
1_555
A
TYR
100
A
TYR
100
26
1_555
A
GLY
152
A
GLY
152
26
1_555
A
GLY
154
A
GLY
154
26
1_555
A
HIS
155
A
HIS
155
26
1_555
A
ILE
156
A
ILE
156
26
1_555
A
TYR
174
A
TYR
174
26
1_555
A
ASP
175
A
ASP
175
26
1_555
A
PRO
176
A
PRO
176
26
1_555
A
HIS
204
A
HIS
204
26
1_555
A
VAL
205
A
VAL
205
26
1_555
A
PRO
206
A
PRO
206
26
1_555
A
ASN
211
A
ASN
211
26
1_555
A
ILE
214
A
ILE
214
26
1_555
A
THR
232
A
THR
232
26
1_555
A
ALA
233
A
ALA
233
26
1_555
A
ARG
234
A
ARG
234
26
1_555
A
ASP
258
A
ASP
258
26
1_555
A
THR
259
A
THR
259
26
1_555
A
HIS
295
A
HIS
295
26
1_555
A
TYR
298
A
TYR
298
26
1_555
A
COI
404
E
COI
26
1_555
A
HOH
502
F
HOH
26
1_555
A
HOH
504
F
HOH
26
1_555
A
HOH
580
F
HOH
26
1_555
A
HOH
581
F
HOH
26
1_555
A
HOH
629
F
HOH
26
1_555
A
VAL
77
A
VAL
77
7
1_555
A
TYR
100
A
TYR
100
7
1_555
A
ARG
234
A
ARG
234
7
1_555
A
HIS
295
A
HIS
295
7
1_555
A
MET
307
A
MET
307
7
1_555
A
NAD
403
D
NAD
7
1_555
A
SO4
401
B
SO4
7
1_555
182
P 63 2 2