0.010599 0.006119 0.000000 0.000000 0.012238 0.000000 0.000000 0.000000 0.012140 0.00000 0.00000 0.00000 Di Marco, S. Rizzi, M. Volpari, C. Walsh, M. Narjes, F. Colarusso, S. De Francesco, R. Matassa, V.G. Sollazzo, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 94.350 94.350 82.370 C21 H33 F2 N3 O9 509.498 N-(tert-butoxycarbonyl)-L-alpha-glutamyl-N-[(1R)-1-(carboxycarbonyl)-3,3-difluoropropyl]-L-leucinamide peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N O N 2 N C N 3 N O N 4 N C N 5 N C N 6 N C N 7 N C N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N C N 14 N C N 15 N O N 16 N O N 17 N N N 18 S C N 19 N C N 20 N O N 21 N C N 22 N C N 23 N C N 24 N C N 25 N N N 26 S C N 27 N C N 28 N O N 29 N C N 30 N C N 31 N F N 32 N F N 33 N C N 34 N O N 35 N O N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N N N 70 S C N 71 N C N 72 N O N 73 N C N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N C N 89 N N N 90 N C N 91 N N N 92 N N N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N O N 116 N N N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N O N 133 N O N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 R C N 144 N C N 145 N O N 146 N C N 147 N S N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N O N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 N C N 197 N C N 198 N O N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C Y 210 N C Y 211 N N Y 212 N C Y 213 N C Y 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N O N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 S C N 234 N C N 235 N C N 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N C N 281 N N N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N S N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N C N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 R C N 377 N O N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N N Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C N 427 N O N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N ZN N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing Y 207 N sing Y 208 N doub Y 209 N doub N 210 N sing Y 211 N sing N 212 N sing Y 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub N 320 N sing Y 321 N doub N 322 N sing Y 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub Y 389 N sing Y 390 N sing N 391 N sing Y 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing Y 412 N doub Y 413 N sing Y 414 N sing N 415 N sing Y 416 N doub N 417 N sing Y 418 N doub N 419 N sing Y 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 275 7152 10.1074/JBC.275.10.7152 10702283 Inhibition of the Hepatitis C Virus Ns3/4A Protease the Crystal Structures of Two Protease-Inhibitor Complexes 2000 10.2210/pdb1dy9/pdb pdb_00001dy9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 TOROIDAL MIRROR CCD 1999-02-15 MARRESEARCH SI(111) SINGLE WAVELENGTH M x-ray 1 0.936 1.0 ID14-3 ESRF 0.936 SYNCHROTRON ESRF BEAMLINE ID14-3 19749.553 PROTEASE/HELICASE NS3 (P70) 3.4.22.- PROTEASE 2 man polymer 1686.097 NONSTRUCTURAL PROTEIN NS4A (P4) RESIDUES 956-967 YES 2 syn polymer 509.498 N-(tert-butoxycarbonyl)-L-alpha-glutamyl-N-[(1R)-1-(carboxycarbonyl)-3,3-difluoropropyl]-L-leucinamide 2 syn non-polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 213 nat water no no APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMRSPVFTDN APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMRSPVFTDN A,B polypeptide(L) no no KGSVVIVGRIILSGRK KGSVVIVGRIILSGRK C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ISOLATE TAIWAN sample CDNA OF HEPATITIS C VIRUS HCV 31645 HEPATITIS C VIRUS (ISOLATE TAIWAN) 469008 ESCHERICHIA COLI BL21(DE3) PT7-7 1 2.37 47.68 VAPOR DIFFUSION 5.10 THE NS3 PROTEIN (1MG/ML) WAS INCUBATE AT 4C WITH THE NS4A COFACTOR PEPTIDE, CONTAINING A SOLUBIZING LYSINE TAG AT ITS N- AND C-TERMINI(KGSVVIVGRIILSGRK), AT A MOLAR RATIO OF 1:2 AND CONCENTRATED TO 290 MICROMOLAR. NS3J/4A CRYSTALS, WITH A MAXIMUM SIZE OF 0.6 X 0.3 X 0.2 MM**3, WERE OBTAINED BY BOTH HANGING- AND SITTING-DROP VAPOUR DIFFUSION METHODS AFTER TWO WEEKS AT ROOM TEMPERATURE, WITH 3.4 M NACL, 10MM DTT, 0.1 M CITRATE BUFFER PH 5.1. THE TERNARY COMPLEX WITH INHIBITOR WAS PREPARED BY ADDING 5.0 MM OF INIBITOR TO CRYSTALS THAT WERE STABILISED IN 4.5 M NACL, 10 MM DTT, 0.1 M CITRATE BUFFER, PH 5.1. exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_biol struct_conn pdbx_database_status reflns_shell chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Data collection Derived calculations Experimental preparation Other Data collection Other Data collection Database references Derived calculations Refinement description 1 0 2001-01-28 1 1 2011-07-13 1 2 2012-11-30 1 3 2019-05-08 1 4 2019-10-09 1 5 2023-12-06 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _struct_conn.pdbx_leaving_atom_flag _pdbx_database_status.status_code_sf _reflns_shell.pdbx_Rsym_value _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE CRYSTAL STRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES (APO STRUCTURE) INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE CRYSTAL STRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES (INHIBITOR II) BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A (PROTEASE) SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS AC AND BC IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 2000-01-31 REL REL 2ZF N-(tert-butoxycarbonyl)-L-alpha-glutamyl-N-[(1R)-1-(carboxycarbonyl)-3,3-difluoropropyl]-L-leucinamide ZN ZINC ION HOH water 31645 HEPATITIS C VIRUS sample GENOME POLYPROTEIN, ID POLG_HCVJA_7, PROTEASE NS3 GENOME POLYPROTEIN, ID POLG_HCVJA_8, NONSTRUCTURAL PROTEIN THE SWISSPROT ENTRY POLG_HCVJA GIVES A FULL DESCRIPTION OF THE GENOME POLYPROTEIN FROM HEPATITIS C VIRUS (ISOLATE JAPANESE) THAT CONTAINS THE FOLLOWING MATURE PROTEINS PRODUCED BY POST-TRANSLATIONAL PROCESSING - CAPSID PROTEIN C (CORE PROTEIN) (P22); ENVELOPE GLYCOPROTEIN E1 (GP32) (GP35); ENVELOPE GLYCOPROTEIN E2 (GP68) (GP70) (NS1); PROTEIN P7; NONSTRUCTURAL PROTEIN NS2 (P21) (EC 3.4.22.*); PROTEASE/HELICASE NS3 (P70) (EC 3.4.21.*); NONSTRUCTURAL PROTEIN NS4A (P4); NONSTRUCTURAL PROTEIN NS4B (P27); NONSTRUCTURAL PROTEIN NS5A (P56); NONSTRUCTURAL PROTEIN NS5B (P66) (P70) (RNA-DIRECTED RNA POLYMERASE) (EC 2.7.7.48)]. HOWEVER, THE SWISSPROT ENTRY Q81755 (ISOLATE TAIWANESE) IS A 100% MATCH TO THE NS3 PROTEIN STUDIED HERE. 1DY7 PDB ENTRY 1DY7 PDB experimental model Inhibitor BOC-GLU-LEU-FKI, PEPTIDE INHIBITOR Peptide-like 2ZF 401 3 2ZF 2ZF 401 A 2ZF 401 3 2ZF 2ZF 401 B ZN 300 4 ZN ZN 300 B HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2093 5 HOH HOH 2093 A HOH 2094 5 HOH HOH 2094 A HOH 2095 5 HOH HOH 2095 A HOH 2096 5 HOH HOH 2096 A HOH 2097 5 HOH HOH 2097 A HOH 2098 5 HOH HOH 2098 A HOH 2099 5 HOH HOH 2099 A HOH 2001 5 HOH HOH 2001 B HOH 2002 5 HOH HOH 2002 B HOH 2003 5 HOH HOH 2003 B HOH 2004 5 HOH HOH 2004 B HOH 2005 5 HOH HOH 2005 B HOH 2006 5 HOH HOH 2006 B HOH 2007 5 HOH HOH 2007 B HOH 2008 5 HOH HOH 2008 B HOH 2009 5 HOH HOH 2009 B HOH 2010 5 HOH HOH 2010 B HOH 2011 5 HOH HOH 2011 B HOH 2012 5 HOH HOH 2012 B HOH 2013 5 HOH HOH 2013 B HOH 2014 5 HOH HOH 2014 B HOH 2015 5 HOH HOH 2015 B HOH 2016 5 HOH HOH 2016 B HOH 2017 5 HOH HOH 2017 B HOH 2018 5 HOH HOH 2018 B HOH 2019 5 HOH HOH 2019 B HOH 2020 5 HOH HOH 2020 B HOH 2021 5 HOH HOH 2021 B HOH 2022 5 HOH HOH 2022 B HOH 2023 5 HOH HOH 2023 B HOH 2024 5 HOH HOH 2024 B HOH 2025 5 HOH HOH 2025 B HOH 2026 5 HOH HOH 2026 B HOH 2027 5 HOH HOH 2027 B HOH 2028 5 HOH HOH 2028 B HOH 2029 5 HOH HOH 2029 B HOH 2030 5 HOH HOH 2030 B HOH 2031 5 HOH HOH 2031 B HOH 2032 5 HOH HOH 2032 B HOH 2033 5 HOH HOH 2033 B HOH 2034 5 HOH HOH 2034 B HOH 2035 5 HOH HOH 2035 B HOH 2036 5 HOH HOH 2036 B HOH 2037 5 HOH HOH 2037 B HOH 2038 5 HOH HOH 2038 B HOH 2039 5 HOH HOH 2039 B HOH 2040 5 HOH HOH 2040 B HOH 2041 5 HOH HOH 2041 B HOH 2042 5 HOH HOH 2042 B HOH 2043 5 HOH HOH 2043 B HOH 2044 5 HOH HOH 2044 B HOH 2045 5 HOH HOH 2045 B HOH 2046 5 HOH HOH 2046 B HOH 2047 5 HOH HOH 2047 B HOH 2048 5 HOH HOH 2048 B HOH 2049 5 HOH HOH 2049 B HOH 2050 5 HOH HOH 2050 B HOH 2051 5 HOH HOH 2051 B HOH 2052 5 HOH HOH 2052 B HOH 2053 5 HOH HOH 2053 B HOH 2054 5 HOH HOH 2054 B HOH 2055 5 HOH HOH 2055 B HOH 2056 5 HOH HOH 2056 B HOH 2057 5 HOH HOH 2057 B HOH 2058 5 HOH HOH 2058 B HOH 2059 5 HOH HOH 2059 B HOH 2060 5 HOH HOH 2060 B HOH 2061 5 HOH HOH 2061 B HOH 2062 5 HOH HOH 2062 B HOH 2063 5 HOH HOH 2063 B HOH 2064 5 HOH HOH 2064 B HOH 2065 5 HOH HOH 2065 B HOH 2066 5 HOH HOH 2066 B HOH 2067 5 HOH HOH 2067 B HOH 2068 5 HOH HOH 2068 B HOH 2069 5 HOH HOH 2069 B HOH 2070 5 HOH HOH 2070 B HOH 2071 5 HOH HOH 2071 B HOH 2072 5 HOH HOH 2072 B HOH 2073 5 HOH HOH 2073 B HOH 2074 5 HOH HOH 2074 B HOH 2075 5 HOH HOH 2075 B HOH 2076 5 HOH HOH 2076 B HOH 2077 5 HOH HOH 2077 B HOH 2078 5 HOH HOH 2078 B HOH 2079 5 HOH HOH 2079 B HOH 2080 5 HOH HOH 2080 B HOH 2081 5 HOH HOH 2081 B HOH 2082 5 HOH HOH 2082 B HOH 2083 5 HOH HOH 2083 B HOH 2084 5 HOH HOH 2084 B HOH 2085 5 HOH HOH 2085 B HOH 2086 5 HOH HOH 2086 B HOH 2087 5 HOH HOH 2087 B HOH 2088 5 HOH HOH 2088 B HOH 2089 5 HOH HOH 2089 B HOH 2090 5 HOH HOH 2090 B HOH 2091 5 HOH HOH 2091 B HOH 2092 5 HOH HOH 2092 B HOH 2093 5 HOH HOH 2093 B HOH 2094 5 HOH HOH 2094 B HOH 2095 5 HOH HOH 2095 B HOH 2096 5 HOH HOH 2096 B HOH 2097 5 HOH HOH 2097 B HOH 2098 5 HOH HOH 2098 B HOH 2099 5 HOH HOH 2099 B HOH 2100 5 HOH HOH 2100 B HOH 2101 5 HOH HOH 2101 B HOH 2102 5 HOH HOH 2102 B HOH 2103 5 HOH HOH 2103 B HOH 2001 5 HOH HOH 2001 C HOH 2002 5 HOH HOH 2002 C HOH 2004 5 HOH HOH 2004 C HOH 2005 5 HOH HOH 2005 C HOH 2006 5 HOH HOH 2006 C HOH 2007 5 HOH HOH 2007 C HOH 2008 5 HOH HOH 2008 C HOH 2001 5 HOH HOH 2001 D HOH 2002 5 HOH HOH 2002 D HOH 2003 5 HOH HOH 2003 D HOH 2004 5 HOH HOH 2004 D ALA 1 n 1 ALA 1 A PRO 2 n 2 PRO 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A ALA 5 n 5 ALA 5 A TYR 6 n 6 TYR 6 A SER 7 n 7 SER 7 A GLN 8 n 8 GLN 8 A GLN 9 n 9 GLN 9 A THR 10 n 10 THR 10 A ARG 11 n 11 ARG 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A CYS 16 n 16 CYS 16 A ILE 17 n 17 ILE 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A SER 20 n 20 SER 20 A LEU 21 n 21 LEU 21 A THR 22 n 22 THR 22 A GLY 23 n 23 GLY 23 A ARG 24 n 24 ARG 24 A ASP 25 n 25 ASP 25 A LYS 26 n 26 LYS 26 A ASN 27 n 27 ASN 27 A GLN 28 n 28 GLN 28 A VAL 29 n 29 VAL 29 A ASP 30 n 30 ASP 30 A GLY 31 n 31 GLY 31 A GLU 32 n 32 GLU 32 A VAL 33 n 33 VAL 33 A GLN 34 n 34 GLN 34 A VAL 35 n 35 VAL 35 A LEU 36 n 36 LEU 36 A SER 37 n 37 SER 37 A THR 38 n 38 THR 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A SER 42 n 42 SER 42 A PHE 43 n 43 PHE 43 A LEU 44 n 44 LEU 44 A ALA 45 n 45 ALA 45 A THR 46 n 46 THR 46 A CYS 47 n 47 CYS 47 A VAL 48 n 48 VAL 48 A ASN 49 n 49 ASN 49 A GLY 50 n 50 GLY 50 A VAL 51 n 51 VAL 51 A CYS 52 n 52 CYS 52 A TRP 53 n 53 TRP 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A TYR 56 n 56 TYR 56 A HIS 57 n 57 HIS 57 A GLY 58 n 58 GLY 58 A ALA 59 n 59 ALA 59 A GLY 60 n 60 GLY 60 A SER 61 n 61 SER 61 A LYS 62 n 62 LYS 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A ALA 65 n 65 ALA 65 A GLY 66 n 66 GLY 66 A PRO 67 n 67 PRO 67 A LYS 68 n 68 LYS 68 A GLY 69 n 69 GLY 69 A PRO 70 n 70 PRO 70 A ILE 71 n 71 ILE 71 A THR 72 n 72 THR 72 A GLN 73 n 73 GLN 73 A MET 74 n 74 MET 74 A TYR 75 n 75 TYR 75 A THR 76 n 76 THR 76 A ASN 77 n 77 ASN 77 A VAL 78 n 78 VAL 78 A ASP 79 n 79 ASP 79 A GLN 80 n 80 GLN 80 A ASP 81 n 81 ASP 81 A LEU 82 n 82 LEU 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A TRP 85 n 85 TRP 85 A PRO 86 n 86 PRO 86 A ALA 87 n 87 ALA 87 A PRO 88 n 88 PRO 88 A PRO 89 n 89 PRO 89 A GLY 90 n 90 GLY 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A SER 93 n 93 SER 93 A MET 94 n 94 MET 94 A THR 95 n 95 THR 95 A PRO 96 n 96 PRO 96 A CYS 97 n 97 CYS 97 A THR 98 n 98 THR 98 A CYS 99 n 99 CYS 99 A GLY 100 n 100 GLY 100 A SER 101 n 101 SER 101 A SER 102 n 102 SER 102 A ASP 103 n 103 ASP 103 A LEU 104 n 104 LEU 104 A TYR 105 n 105 TYR 105 A LEU 106 n 106 LEU 106 A VAL 107 n 107 VAL 107 A THR 108 n 108 THR 108 A ARG 109 n 109 ARG 109 A HIS 110 n 110 HIS 110 A ALA 111 n 111 ALA 111 A ASP 112 n 112 ASP 112 A VAL 113 n 113 VAL 113 A ILE 114 n 114 ILE 114 A PRO 115 n 115 PRO 115 A VAL 116 n 116 VAL 116 A ARG 117 n 117 ARG 117 A ARG 118 n 118 ARG 118 A ARG 119 n 119 ARG 119 A GLY 120 n 120 GLY 120 A ASP 121 n 121 ASP 121 A SER 122 n 122 SER 122 A ARG 123 n 123 ARG 123 A GLY 124 n 124 GLY 124 A SER 125 n 125 SER 125 A LEU 126 n 126 LEU 126 A LEU 127 n 127 LEU 127 A SER 128 n 128 SER 128 A PRO 129 n 129 PRO 129 A ARG 130 n 130 ARG 130 A PRO 131 n 131 PRO 131 A VAL 132 n 132 VAL 132 A SER 133 n 133 SER 133 A TYR 134 n 134 TYR 134 A LEU 135 n 135 LEU 135 A LYS 136 n 136 LYS 136 A GLY 137 n 137 GLY 137 A SER 138 n 138 SER 138 A SER 139 n 139 SER 139 A GLY 140 n 140 GLY 140 A GLY 141 n 141 GLY 141 A PRO 142 n 142 PRO 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A CYS 145 n 145 CYS 145 A PRO 146 n 146 PRO 146 A SER 147 n 147 SER 147 A GLY 148 n 148 GLY 148 A HIS 149 n 149 HIS 149 A VAL 150 n 150 VAL 150 A VAL 151 n 151 VAL 151 A GLY 152 n 152 GLY 152 A ILE 153 n 153 ILE 153 A PHE 154 n 154 PHE 154 A ARG 155 n 155 ARG 155 A ALA 156 n 156 ALA 156 A ALA 157 n 157 ALA 157 A VAL 158 n 158 VAL 158 A CYS 159 n 159 CYS 159 A THR 160 n 160 THR 160 A ARG 161 n 161 ARG 161 A GLY 162 n 162 GLY 162 A VAL 163 n 163 VAL 163 A ALA 164 n 164 ALA 164 A LYS 165 n 165 LYS 165 A ALA 166 n 166 ALA 166 A VAL 167 n 167 VAL 167 A ASP 168 n 168 ASP 168 A PHE 169 n 169 PHE 169 A ILE 170 n 170 ILE 170 A PRO 171 n 171 PRO 171 A VAL 172 n 172 VAL 172 A GLU 173 n 173 GLU 173 A SER 174 n 174 SER 174 A MET 175 n 175 MET 175 A n 176 176 A n 177 177 A n 178 178 A n 179 179 A n 180 180 A n 181 181 A n 182 182 A n 183 183 A n 184 184 A n 185 185 A n 186 186 A n 187 187 A ALA 1 n 1 ALA 1 B PRO 2 n 2 PRO 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B ALA 5 n 5 ALA 5 B TYR 6 n 6 TYR 6 B SER 7 n 7 SER 7 B GLN 8 n 8 GLN 8 B GLN 9 n 9 GLN 9 B THR 10 n 10 THR 10 B ARG 11 n 11 ARG 11 B GLY 12 n 12 GLY 12 B LEU 13 n 13 LEU 13 B LEU 14 n 14 LEU 14 B GLY 15 n 15 GLY 15 B CYS 16 n 16 CYS 16 B ILE 17 n 17 ILE 17 B ILE 18 n 18 ILE 18 B THR 19 n 19 THR 19 B SER 20 n 20 SER 20 B LEU 21 n 21 LEU 21 B THR 22 n 22 THR 22 B GLY 23 n 23 GLY 23 B ARG 24 n 24 ARG 24 B ASP 25 n 25 ASP 25 B LYS 26 n 26 LYS 26 B ASN 27 n 27 ASN 27 B GLN 28 n 28 GLN 28 B VAL 29 n 29 VAL 29 B ASP 30 n 30 ASP 30 B GLY 31 n 31 GLY 31 B GLU 32 n 32 GLU 32 B VAL 33 n 33 VAL 33 B GLN 34 n 34 GLN 34 B VAL 35 n 35 VAL 35 B LEU 36 n 36 LEU 36 B SER 37 n 37 SER 37 B THR 38 n 38 THR 38 B ALA 39 n 39 ALA 39 B THR 40 n 40 THR 40 B GLN 41 n 41 GLN 41 B SER 42 n 42 SER 42 B PHE 43 n 43 PHE 43 B LEU 44 n 44 LEU 44 B ALA 45 n 45 ALA 45 B THR 46 n 46 THR 46 B CYS 47 n 47 CYS 47 B VAL 48 n 48 VAL 48 B ASN 49 n 49 ASN 49 B GLY 50 n 50 GLY 50 B VAL 51 n 51 VAL 51 B CYS 52 n 52 CYS 52 B TRP 53 n 53 TRP 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B TYR 56 n 56 TYR 56 B HIS 57 n 57 HIS 57 B GLY 58 n 58 GLY 58 B ALA 59 n 59 ALA 59 B GLY 60 n 60 GLY 60 B SER 61 n 61 SER 61 B LYS 62 n 62 LYS 62 B THR 63 n 63 THR 63 B LEU 64 n 64 LEU 64 B ALA 65 n 65 ALA 65 B GLY 66 n 66 GLY 66 B PRO 67 n 67 PRO 67 B LYS 68 n 68 LYS 68 B GLY 69 n 69 GLY 69 B PRO 70 n 70 PRO 70 B ILE 71 n 71 ILE 71 B THR 72 n 72 THR 72 B GLN 73 n 73 GLN 73 B MET 74 n 74 MET 74 B TYR 75 n 75 TYR 75 B THR 76 n 76 THR 76 B ASN 77 n 77 ASN 77 B VAL 78 n 78 VAL 78 B ASP 79 n 79 ASP 79 B GLN 80 n 80 GLN 80 B ASP 81 n 81 ASP 81 B LEU 82 n 82 LEU 82 B VAL 83 n 83 VAL 83 B GLY 84 n 84 GLY 84 B TRP 85 n 85 TRP 85 B PRO 86 n 86 PRO 86 B ALA 87 n 87 ALA 87 B PRO 88 n 88 PRO 88 B PRO 89 n 89 PRO 89 B GLY 90 n 90 GLY 90 B ALA 91 n 91 ALA 91 B ARG 92 n 92 ARG 92 B SER 93 n 93 SER 93 B MET 94 n 94 MET 94 B THR 95 n 95 THR 95 B PRO 96 n 96 PRO 96 B CYS 97 n 97 CYS 97 B THR 98 n 98 THR 98 B CYS 99 n 99 CYS 99 B GLY 100 n 100 GLY 100 B SER 101 n 101 SER 101 B SER 102 n 102 SER 102 B ASP 103 n 103 ASP 103 B LEU 104 n 104 LEU 104 B TYR 105 n 105 TYR 105 B LEU 106 n 106 LEU 106 B VAL 107 n 107 VAL 107 B THR 108 n 108 THR 108 B ARG 109 n 109 ARG 109 B HIS 110 n 110 HIS 110 B ALA 111 n 111 ALA 111 B ASP 112 n 112 ASP 112 B VAL 113 n 113 VAL 113 B ILE 114 n 114 ILE 114 B PRO 115 n 115 PRO 115 B VAL 116 n 116 VAL 116 B ARG 117 n 117 ARG 117 B ARG 118 n 118 ARG 118 B ARG 119 n 119 ARG 119 B GLY 120 n 120 GLY 120 B ASP 121 n 121 ASP 121 B SER 122 n 122 SER 122 B ARG 123 n 123 ARG 123 B GLY 124 n 124 GLY 124 B SER 125 n 125 SER 125 B LEU 126 n 126 LEU 126 B LEU 127 n 127 LEU 127 B SER 128 n 128 SER 128 B PRO 129 n 129 PRO 129 B ARG 130 n 130 ARG 130 B PRO 131 n 131 PRO 131 B VAL 132 n 132 VAL 132 B SER 133 n 133 SER 133 B TYR 134 n 134 TYR 134 B LEU 135 n 135 LEU 135 B LYS 136 n 136 LYS 136 B GLY 137 n 137 GLY 137 B SER 138 n 138 SER 138 B SER 139 n 139 SER 139 B GLY 140 n 140 GLY 140 B GLY 141 n 141 GLY 141 B PRO 142 n 142 PRO 142 B LEU 143 n 143 LEU 143 B LEU 144 n 144 LEU 144 B CYS 145 n 145 CYS 145 B PRO 146 n 146 PRO 146 B SER 147 n 147 SER 147 B GLY 148 n 148 GLY 148 B HIS 149 n 149 HIS 149 B VAL 150 n 150 VAL 150 B VAL 151 n 151 VAL 151 B GLY 152 n 152 GLY 152 B ILE 153 n 153 ILE 153 B PHE 154 n 154 PHE 154 B ARG 155 n 155 ARG 155 B ALA 156 n 156 ALA 156 B ALA 157 n 157 ALA 157 B VAL 158 n 158 VAL 158 B CYS 159 n 159 CYS 159 B THR 160 n 160 THR 160 B ARG 161 n 161 ARG 161 B GLY 162 n 162 GLY 162 B VAL 163 n 163 VAL 163 B ALA 164 n 164 ALA 164 B LYS 165 n 165 LYS 165 B ALA 166 n 166 ALA 166 B VAL 167 n 167 VAL 167 B ASP 168 n 168 ASP 168 B PHE 169 n 169 PHE 169 B ILE 170 n 170 ILE 170 B PRO 171 n 171 PRO 171 B VAL 172 n 172 VAL 172 B GLU 173 n 173 GLU 173 B SER 174 n 174 SER 174 B MET 175 n 175 MET 175 B n 176 176 B n 177 177 B n 178 178 B n 179 179 B n 180 180 B n 181 181 B n 182 182 B n 183 183 B n 184 184 B n 185 185 B n 186 186 B n 187 187 B n 1 220 C GLY 221 n 2 GLY 221 C SER 222 n 3 SER 222 C VAL 223 n 4 VAL 223 C VAL 224 n 5 VAL 224 C ILE 225 n 6 ILE 225 C VAL 226 n 7 VAL 226 C GLY 227 n 8 GLY 227 C ARG 228 n 9 ARG 228 C ILE 229 n 10 ILE 229 C ILE 230 n 11 ILE 230 C LEU 231 n 12 LEU 231 C SER 232 n 13 SER 232 C n 14 233 C n 15 234 C n 16 235 C n 1 220 D GLY 221 n 2 GLY 221 D SER 222 n 3 SER 222 D VAL 223 n 4 VAL 223 D VAL 224 n 5 VAL 224 D ILE 225 n 6 ILE 225 D VAL 226 n 7 VAL 226 D GLY 227 n 8 GLY 227 D ARG 228 n 9 ARG 228 D ILE 229 n 10 ILE 229 D ILE 230 n 11 ILE 230 D LEU 231 n 12 LEU 231 D SER 232 n 13 SER 232 D n 14 233 D n 15 234 D n 16 235 D software_defined_assembly PQS 2 dimeric software_defined_assembly PQS 2 dimeric 4770 -19.4 10070 4820 -22.4 10050 B CYS 97 B SG CYS 97 1_555 B ZN 300 G ZN ZN 1_555 B CYS 99 B SG CYS 99 1_555 89.5 B CYS 97 B SG CYS 97 1_555 B ZN 300 G ZN ZN 1_555 B CYS 145 B SG CYS 145 1_555 106.5 B CYS 99 B SG CYS 99 1_555 B ZN 300 G ZN ZN 1_555 B CYS 145 B SG CYS 145 1_555 115.0 B CYS 97 B SG CYS 97 1_555 B ZN 300 G ZN ZN 1_555 B HOH 2098 I O HOH 1_555 118.6 B CYS 99 B SG CYS 99 1_555 B ZN 300 G ZN ZN 1_555 B HOH 2098 I O HOH 1_555 111.2 B CYS 145 B SG CYS 145 1_555 B ZN 300 G ZN ZN 1_555 B HOH 2098 I O HOH 1_555 113.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 C N ILE 229 C N ILE 10 A O VAL 33 A O VAL 33 A N LEU 36 A N LEU 36 A O PHE 43 A O PHE 43 A N VAL 48 A N VAL 48 A O VAL 51 A O VAL 51 A N THR 54 A N THR 54 A O VAL 83 A O VAL 83 A N GLY 84 A N GLY 84 A O TYR 75 A O TYR 75 A N GLY 66 A N GLY 66 A O GLY 69 A O GLY 69 A N LEU 106 A N LEU 106 A O ILE 114 A O ILE 114 A N ARG 119 A N ARG 119 A O ARG 123 A O ARG 123 A N ARG 130 A N ARG 130 A O ALA 164 A O ALA 164 A N ILE 170 A N ILE 170 A O ILE 153 A O ILE 153 A N VAL 151 A N VAL 151 A O LEU 143 A O LEU 143 A N LEU 144 A N LEU 144 A O TYR 105 A O TYR 105 B N GLN 8 B N GLN 8 D O ARG 228 D O ARG 9 D N ILE 229 D N ILE 10 B O VAL 33 B O VAL 33 B N LEU 36 B N LEU 36 B O PHE 43 B O PHE 43 B N VAL 48 B N VAL 48 B O VAL 51 B O VAL 51 B N THR 54 B N THR 54 B O VAL 83 B O VAL 83 B N GLY 84 B N GLY 84 B O TYR 75 B O TYR 75 B N LEU 106 B N LEU 106 B O ILE 114 B O ILE 114 B N ARG 117 B N ARG 117 B O SER 125 B O SER 125 B N ARG 130 B N ARG 130 B O ALA 164 B O ALA 164 B N ILE 170 B N ILE 170 B O ILE 153 B O ILE 153 B N VAL 151 B N VAL 151 B O LEU 143 B O LEU 143 B N LEU 144 B N LEU 144 B O TYR 105 B O TYR 105 1 A GLU 176 A GLU 176 1 Y 1 A THR 177 A THR 177 1 Y 1 A THR 178 A THR 178 1 Y 1 A MET 179 A MET 179 1 Y 1 A ARG 180 A ARG 180 1 Y 1 A SER 181 A SER 181 1 Y 1 A PRO 182 A PRO 182 1 Y 1 A VAL 183 A VAL 183 1 Y 1 A PHE 184 A PHE 184 1 Y 1 A THR 185 A THR 185 1 Y 1 A ASP 186 A ASP 186 1 Y 1 A ASN 187 A ASN 187 1 Y 1 B GLU 176 B GLU 176 1 Y 1 B THR 177 B THR 177 1 Y 1 B THR 178 B THR 178 1 Y 1 B MET 179 B MET 179 1 Y 1 B ARG 180 B ARG 180 1 Y 1 B SER 181 B SER 181 1 Y 1 B PRO 182 B PRO 182 1 Y 1 B VAL 183 B VAL 183 1 Y 1 B PHE 184 B PHE 184 1 Y 1 B THR 185 B THR 185 1 Y 1 B ASP 186 B ASP 186 1 Y 1 B ASN 187 B ASN 187 1 Y 1 C LYS 220 C LYS 1 1 Y 1 C GLY 233 C GLY 14 1 Y 1 C ARG 234 C ARG 15 1 Y 1 C LYS 235 C LYS 16 1 Y 1 D LYS 220 D LYS 1 1 Y 1 D GLY 233 D GLY 14 1 Y 1 D ARG 234 D ARG 15 1 Y 1 D LYS 235 D LYS 16 1 Y 1 A CA2 2ZF 401 WRONG HAND 1 B B OH NE2 TYR GLN 75 80 2.15 1 B TRP 53 -10.39 1 B VAL 158 11.38 1 3.64 0.50 120.30 123.94 A A A NE CZ NH1 ARG ARG ARG 11 11 11 N 1 3.26 0.50 120.30 123.56 A A A NE CZ NH2 ARG ARG ARG 109 109 109 N 1 -5.23 0.50 120.30 115.07 A A A NE CZ NH1 ARG ARG ARG 117 117 117 N 1 10.93 1.40 123.60 134.53 A A A CD NE CZ ARG ARG ARG 118 118 118 N 1 7.06 0.50 120.30 127.36 A A A NE CZ NH1 ARG ARG ARG 118 118 118 N 1 -3.78 0.50 120.30 116.52 A A A NE CZ NH2 ARG ARG ARG 118 118 118 N 1 4.52 0.50 120.30 124.82 A A A NE CZ NH1 ARG ARG ARG 123 123 123 N 1 -8.84 1.40 123.60 114.76 A A A CD NE CZ ARG ARG ARG 130 130 130 N 1 -8.03 0.50 120.30 112.27 A A A NE CZ NH1 ARG ARG ARG 130 130 130 N 1 8.26 0.50 120.30 128.56 A A A NE CZ NH2 ARG ARG ARG 130 130 130 N 1 10.68 1.40 123.60 134.28 A A A CD NE CZ ARG ARG ARG 155 155 155 N 1 -3.95 0.50 120.30 116.35 A A A NE CZ NH2 ARG ARG ARG 155 155 155 N 1 -3.89 0.60 121.00 117.11 B B B CB CG CD2 TYR TYR TYR 75 75 75 N 1 -3.85 0.50 120.30 116.45 B B B NE CZ NH1 ARG ARG ARG 109 109 109 N 1 5.45 0.50 120.30 125.75 B B B NE CZ NH2 ARG ARG ARG 109 109 109 N 1 -6.14 0.50 120.30 114.16 B B B NE CZ NH2 ARG ARG ARG 130 130 130 N 1 -4.69 0.50 120.30 115.61 B B B NE CZ NH2 ARG ARG ARG 155 155 155 N 1 -4.05 0.50 120.30 116.25 C C C NE CZ NH2 ARG ARG ARG 228 228 228 N 1 A THR 98 78.55 -50.30 43.50 0.275 0.213 0.207 2.10 20.00 1224 23960 5.000 98.2 3.620 0.097 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.220 0.210 PDB ENTRY 1DY7 2.10 20.00 213 3018 71 0 2734 0.010 0.020 0.030 0.040 0.030 0.050 2.900 2.000 4.180 3.000 3.770 2.000 5.490 3.000 0.012 0.020 0.125 0.150 0.193 0.300 0.278 0.300 0.201 0.300 6.700 7.000 20.500 15.000 26.400 20.000 37.40 2.100 20.000 1DY9 23960 -3.000 0.03500 1 32.0000 2.800 98.2 2.10 2.14 3.200 0.1500 1 2.10 98.4 refinement REFMAC data reduction DENZO data scaling SCALEPACK phasing AMoRE Inhibition of the Hepatitis C Virus NS3/4A Protease. The Crystal Structures of Two Protease-Inhibitor Complexes (inhibitor I) 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N A GLY 12 A GLY 12 HELX_P A GLY 23 A GLY 23 1 1 12 A TYR 56 A TYR 56 HELX_P A GLY 60 A GLY 60 1 2 5 A SER 133 A SER 133 HELX_P A LEU 135 A LEU 135 5 3 3 A GLU 173 A GLU 173 HELX_P A MET 175 A MET 175 5 4 3 B GLY 12 B GLY 12 HELX_P B GLY 23 B GLY 23 1 5 12 B TYR 56 B TYR 56 HELX_P B GLY 60 B GLY 60 1 6 5 B VAL 132 B VAL 132 HELX_P B LYS 136 B LYS 136 1 7 5 covale 1.432 none A SER 139 A OG SER 139 1_555 A 2ZF 401 E C6 2ZF 1_555 covale 1.442 none B SER 139 B OG SER 139 1_555 B 2ZF 401 F C6 2ZF 1_555 metalc 2.655 B CYS 97 B SG CYS 97 1_555 B ZN 300 G ZN ZN 1_555 metalc 2.819 B CYS 99 B SG CYS 99 1_555 B ZN 300 G ZN ZN 1_555 metalc 2.665 B CYS 145 B SG CYS 145 1_555 B ZN 300 G ZN ZN 1_555 metalc 2.612 B ZN 300 G ZN ZN 1_555 B HOH 2098 I O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR SERINE PROTEASE, NS3, NS4A, HEPATITIS C VIRUS, PROTEASE INHIBITION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX given 0.372400 0.928070 -0.002600 0.928060 -0.372410 -0.003230 -0.003960 -0.001210 -0.999990 12.21626 -5.75718 14.19541 Q81755 UNP 1 Q81755 Q81755 UNP 2 Q81755 305 491 1DY9 1 187 Q81755 A 1 1 187 305 491 1DY9 1 187 Q81755 B 1 1 187 955 970 1DY9 220 235 Q81755 C 2 1 16 955 970 1DY9 220 235 Q81755 D 2 1 16 3 THR engineered mutation LYS 220 1DY9 C Q81755 UNP 955 1 3 PRO engineered mutation LYS 235 1DY9 C Q81755 UNP 970 16 4 THR engineered mutation LYS 220 1DY9 D Q81755 UNP 955 1 4 PRO engineered mutation LYS 235 1DY9 D Q81755 UNP 970 16 7 2 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 4 A THR 4 A GLN 9 A GLN 9 C VAL 224 C VAL 5 C SER 232 C SER 13 A VAL 33 A VAL 33 A SER 37 A SER 37 A SER 42 A SER 42 A VAL 48 A VAL 48 A VAL 51 A VAL 51 A VAL 55 A VAL 55 A LEU 82 A LEU 82 A PRO 86 A PRO 86 A TYR 75 A TYR 75 A ASN 77 A ASN 77 A LEU 64 A LEU 64 A GLY 66 A GLY 66 A GLY 69 A GLY 69 A ILE 71 A ILE 71 A ASP 103 A ASP 103 A VAL 107 A VAL 107 A VAL 113 A VAL 113 A GLY 120 A GLY 120 A ARG 123 A ARG 123 A PRO 131 A PRO 131 A VAL 163 A VAL 163 A PRO 171 A PRO 171 A VAL 150 A VAL 150 A THR 160 A THR 160 A PRO 142 A PRO 142 A LEU 144 A LEU 144 A ASP 103 A ASP 103 A VAL 107 A VAL 107 B ALA 5 B ALA 5 B GLN 9 B GLN 9 D VAL 224 D VAL 5 D LEU 231 D LEU 12 B VAL 33 B VAL 33 B SER 37 B SER 37 B SER 42 B SER 42 B VAL 48 B VAL 48 B VAL 51 B VAL 51 B VAL 55 B VAL 55 B LEU 82 B LEU 82 B PRO 86 B PRO 86 B TYR 75 B TYR 75 B ASN 77 B ASN 77 B ASP 103 B ASP 103 B VAL 107 B VAL 107 B VAL 113 B VAL 113 B ARG 118 B ARG 118 B ARG 123 B ARG 123 B PRO 131 B PRO 131 B VAL 163 B VAL 163 B PRO 171 B PRO 171 B VAL 150 B VAL 150 B THR 160 B THR 160 B PRO 142 B PRO 142 B LEU 144 B LEU 144 B ASP 103 B ASP 103 B VAL 107 B VAL 107 BINDING SITE FOR RESIDUE 2ZF A 401 A 2ZF 401 Software 13 BINDING SITE FOR RESIDUE 2ZF B 401 B 2ZF 401 Software 13 BINDING SITE FOR RESIDUE ZN B 300 B ZN 300 Software 4 A SER 42 A SER 42 13 1_555 A HIS 57 A HIS 57 13 1_555 A LYS 136 A LYS 136 13 1_555 A GLY 137 A GLY 137 13 1_555 A SER 138 A SER 138 13 1_555 A SER 139 A SER 139 13 1_555 A PHE 154 A PHE 154 13 1_555 A ARG 155 A ARG 155 13 1_555 A ALA 156 A ALA 156 13 1_555 A ALA 157 A ALA 157 13 1_555 A CYS 159 A CYS 159 13 1_555 A HOH 2027 H HOH 13 1_555 A HOH 2098 H HOH 13 1_555 B SER 42 B SER 42 13 1_555 B HIS 57 B HIS 57 13 1_555 B VAL 132 B VAL 132 13 1_555 B LYS 136 B LYS 136 13 1_555 B GLY 137 B GLY 137 13 1_555 B SER 138 B SER 138 13 1_555 B SER 139 B SER 139 13 1_555 B PHE 154 B PHE 154 13 1_555 B ARG 155 B ARG 155 13 1_555 B ALA 156 B ALA 156 13 1_555 B ALA 157 B ALA 157 13 1_555 B HOH 2102 I HOH 13 1_555 B HOH 2103 I HOH 13 1_555 B CYS 97 B CYS 97 4 1_555 B CYS 99 B CYS 99 4 1_555 B CYS 145 B CYS 145 4 1_555 B HOH 2098 I HOH 4 1_555 169 P 61