0.009766 0.005638 0.000000 0.000000 0.011276 0.000000 0.000000 0.000000 0.008905 0.00000 0.00000 0.00000 Takeda, K. Matsui, Y. Sato, H. Hino, T. Kanamori, E. Okumura, H. Yamane, T. Iizuka, T. Kamiya, N. Adachi, S. Kouyama, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 102.400 102.400 112.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-galactopyranose beta-D-galactose; D-galactose; galactose D-saccharide, beta linking C6 H12 O6 180.156 alpha-D-glucopyranose alpha-D-glucose; D-glucose; glucose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C43 H89 O6 P 733.137 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCERO-3-PHOSPHATE non-polymer C43 H88 O3 653.157 2,3-DI-PHYTANYL-GLYCEROL 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL non-polymer C46 H94 O11 P2 -2 885.179 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE non-polymer C46 H95 O8 P 807.215 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 R C N 76 S C N 77 R C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 S C N 99 R C N 100 S C N 101 S C N 102 R C N 103 N C N 104 N O N 105 N O N 106 N O N 107 N O N 108 N O N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N N N 123 S C N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N O N 130 N N N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C N 147 N C N 148 N C N 149 N O N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 N C N 163 N C N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N O N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 S C N 179 N C N 180 N C N 181 N C N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N C N 197 N O N 198 S C N 199 N O N 200 N C N 201 N O N 202 N P N 203 N O N 204 N O N 205 N O N 206 N C N 207 N C N 208 R C N 209 N C N 210 N C N 211 N C N 212 N C N 213 R C N 214 N C N 215 N C N 216 N C N 217 N C N 218 R C N 219 N C N 220 N C N 221 N C N 222 N C N 223 N C N 224 N C N 225 N C N 226 N C N 227 N C N 228 R C N 229 N C N 230 N C N 231 N C N 232 N C N 233 R C N 234 N C N 235 N C N 236 N C N 237 N C N 238 R C N 239 N C N 240 N C N 241 N C N 242 N C N 243 N C N 244 N C N 245 N C N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N C N 342 N C N 343 R C N 344 N C N 345 N C N 346 N C N 347 N C N 348 R C N 349 N C N 350 N C N 351 N C N 352 N C N 353 R C N 354 N C N 355 N C N 356 N C N 357 N C N 358 N C N 359 N C N 360 N C N 361 N C N 362 N C N 363 R C N 364 N C N 365 N C N 366 N C N 367 N C N 368 R C N 369 N C N 370 N C N 371 N C N 372 N C N 373 R C N 374 N C N 375 N C N 376 N C N 377 N C N 378 N C N 379 N C N 380 N C N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N C N 470 S C N 471 N C N 472 N C N 473 R C N 474 N C N 475 N O N 476 N O N 477 N O N 478 N O N 479 N O N 480 N O N 481 N O N 482 N O N 483 N O N 484 N O N 485 N O N 486 N P N 487 N P N 488 N C N 489 N C N 490 R C N 491 N C N 492 N C N 493 N C N 494 N C N 495 R C N 496 N C N 497 N C N 498 N C N 499 N C N 500 R C N 501 N C N 502 N C N 503 N C N 504 N C N 505 N C N 506 N C N 507 N C N 508 N C N 509 N C N 510 R C N 511 N C N 512 N C N 513 N C N 514 N C N 515 R C N 516 N C N 517 N C N 518 N C N 519 N C N 520 R C N 521 N C N 522 N C N 523 N C N 524 N C N 525 N C N 526 N C N 527 N C N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N H N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N H N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N H N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 617 N H N 618 N H N 619 N H N 620 N H N 621 N H N 622 N C N 623 S C N 624 N C N 625 N C N 626 R C N 627 N C N 628 N O N 629 N O N 630 N O N 631 N O N 632 N O N 633 N O N 634 N O N 635 N O N 636 S P N 637 N C N 638 N C N 639 R C N 640 N C N 641 N C N 642 N C N 643 N C N 644 R C N 645 N C N 646 N C N 647 N C N 648 N C N 649 R C N 650 N C N 651 N C N 652 N C N 653 N C N 654 N C N 655 N C N 656 N C N 657 N C N 658 N C N 659 R C N 660 N C N 661 N C N 662 N C N 663 N C N 664 R C N 665 N C N 666 N C N 667 N C N 668 N C N 669 R C N 670 N C N 671 N C N 672 N C N 673 N C N 674 N C N 675 N C N 676 N C N 677 N H N 678 N H N 679 N H N 680 N H N 681 N H N 682 N H N 683 N H N 684 N H N 685 N H N 686 N H N 687 N H N 688 N H N 689 N H N 690 N H N 691 N H N 692 N H N 693 N H N 694 N H N 695 N H N 696 N H N 697 N H N 698 N H N 699 N H N 700 N H N 701 N H N 702 N H N 703 N H N 704 N H N 705 N H N 706 N H N 707 N H N 708 N H N 709 N H N 710 N H N 711 N H N 712 N H N 713 N H N 714 N H N 715 N H N 716 N H N 717 N H N 718 N H N 719 N H N 720 N H N 721 N H N 722 N H N 723 N H N 724 N H N 725 N H N 726 N H N 727 N H N 728 N H N 729 N H N 730 N H N 731 N H N 732 N H N 733 N H N 734 N H N 735 N H N 736 N H N 737 N H N 738 N H N 739 N H N 740 N H N 741 N H N 742 N H N 743 N H N 744 N H N 745 N H N 746 N H N 747 N H N 748 N H N 749 N H N 750 N H N 751 N H N 752 N H N 753 N H N 754 N H N 755 N H N 756 N H N 757 N H N 758 N H N 759 N H N 760 N H N 761 N H N 762 N H N 763 N H N 764 N H N 765 N H N 766 N H N 767 N H N 768 N H N 769 N H N 770 N H N 771 N H N 772 N N N 773 S C N 774 N C N 775 N O N 776 N C N 777 N C N 778 N C N 779 N C N 780 N O N 781 N H N 782 N H N 783 N H N 784 N H N 785 N H N 786 N H N 787 N H N 788 N H N 789 N H N 790 N H N 791 N H N 792 N H N 793 N H N 794 N N N 795 S C N 796 N C N 797 N O N 798 N C N 799 N C N 800 N C N 801 N C N 802 N N N 803 N O N 804 N H N 805 N H N 806 N H N 807 N H N 808 N H N 809 N H N 810 N H N 811 N H N 812 N H N 813 N H N 814 N H N 815 N H N 816 N H N 817 N H N 818 N H N 819 S C N 820 S C N 821 S C N 822 S C N 823 R C N 824 N C N 825 N O N 826 N O N 827 N O N 828 N O N 829 N O N 830 N O N 831 N H N 832 N H N 833 N H N 834 N H N 835 N H N 836 N H N 837 N H N 838 N H N 839 N H N 840 N H N 841 N H N 842 N H N 843 N N N 844 S C N 845 N C N 846 N O N 847 N C N 848 N C N 849 N S N 850 N C N 851 N O N 852 N H N 853 N H N 854 N H N 855 N H N 856 N H N 857 N H N 858 N H N 859 N H N 860 N H N 861 N H N 862 N H N 863 N N N 864 S C N 865 N C N 866 N O N 867 N C Y 868 N C Y 869 N C Y 870 N C Y 871 N C Y 872 N C Y 873 N C N 874 N O N 875 N H N 876 N H N 877 N H N 878 N H N 879 N H N 880 N H N 881 N H N 882 N H N 883 N H N 884 N H N 885 N H N 886 N N N 887 S C N 888 N C N 889 N O N 890 N C N 891 N C N 892 N C N 893 N O N 894 N H N 895 N H N 896 N H N 897 N H N 898 N H N 899 N H N 900 N H N 901 N H N 902 N H N 903 N C N 904 N C N 905 N C N 906 N C N 907 N C N 908 N C N 909 N C N 910 N C N 911 N C N 912 N C N 913 N C N 914 N C N 915 N C N 916 N C N 917 N C N 918 N O N 919 N C N 920 N C N 921 N C N 922 N C N 923 N C N 924 N H N 925 N H N 926 N H N 927 N H N 928 N H N 929 N H N 930 N H N 931 N H N 932 N H N 933 N H N 934 N H N 935 N H N 936 N H N 937 N H N 938 N H N 939 N H N 940 N H N 941 N H N 942 N H N 943 N H N 944 N H N 945 N H N 946 N H N 947 N H N 948 N H N 949 N H N 950 N H N 951 N H N 952 N N N 953 S C N 954 N C N 955 N O N 956 N C N 957 N O N 958 N O N 959 N H N 960 N H N 961 N H N 962 N H N 963 N H N 964 N H N 965 N H N 966 N N N 967 S C N 968 N C N 969 N O N 970 R C N 971 N O N 972 N C N 973 N O N 974 N H N 975 N H N 976 N H N 977 N H N 978 N H N 979 N H N 980 N H N 981 N H N 982 N H N 983 N N N 984 S C N 985 N C N 986 N O N 987 N C Y 988 N C Y 989 N C Y 990 N C Y 991 N N Y 992 N C Y 993 N C Y 994 N C Y 995 N C Y 996 N C N 997 N O N 998 N H N 999 N H N 1000 N H N 1001 N H N 1002 N H N 1003 N H N 1004 N H N 1005 N H N 1006 N H N 1007 N H N 1008 N H N 1009 N H N 1010 N N N 1011 S C N 1012 N C N 1013 N O N 1014 N C Y 1015 N C Y 1016 N C Y 1017 N C Y 1018 N C Y 1019 N C Y 1020 N C N 1021 N O N 1022 N O N 1023 N H N 1024 N H N 1025 N H N 1026 N H N 1027 N H N 1028 N H N 1029 N H N 1030 N H N 1031 N H N 1032 N H N 1033 N H N 1034 N N N 1035 S C N 1036 N C N 1037 N O N 1038 N C N 1039 N C N 1040 N C N 1041 N O N 1042 N H N 1043 N H N 1044 N H N 1045 N H N 1046 N H N 1047 N H N 1048 N H N 1049 N H N 1050 N H N 1051 N H N 1052 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing 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N 674 N sing N 675 N sing N 676 N sing N 677 N sing N 678 N sing N 679 N sing N 680 N sing N 681 N sing N 682 N sing N 683 N sing N 684 N sing N 685 N sing N 686 N sing N 687 N sing N 688 N sing N 689 N sing N 690 N sing N 691 N sing N 692 N sing N 693 N sing N 694 N sing N 695 N sing N 696 N sing N 697 N sing N 698 N sing N 699 N sing N 700 N sing N 701 N sing N 702 N sing N 703 N sing N 704 N sing N 705 N sing N 706 N sing N 707 N sing N 708 N sing N 709 N sing N 710 N sing N 711 N sing N 712 N sing N 713 N sing N 714 N sing N 715 N sing N 716 N sing N 717 N sing N 718 N sing N 719 N sing N 720 N sing N 721 N sing N 722 N sing N 723 N sing N 724 N sing N 725 N sing N 726 N sing N 727 N sing N 728 N sing N 729 N sing N 730 N sing N 731 N sing N 732 N sing N 733 N sing N 734 N sing N 735 N sing N 736 N sing N 737 N sing N 738 N sing N 739 N sing N 740 N sing N 741 N sing N 742 N sing N 743 N sing N 744 N sing N 745 N sing N 746 N sing N 747 N sing N 748 N sing N 749 N sing N 750 N sing N 751 N sing N 752 N sing N 753 N sing N 754 N sing N 755 N sing N 756 N sing N 757 N sing N 758 N sing N 759 N sing N 760 N sing N 761 N sing N 762 N sing N 763 N sing N 764 N sing N 765 N doub N 766 N sing N 767 N sing N 768 N sing N 769 N sing N 770 N sing N 771 N sing N 772 N sing N 773 N sing N 774 N sing N 775 N sing N 776 N sing N 777 N sing N 778 N sing N 779 N sing N 780 N sing N 781 N sing N 782 N sing N 783 N sing N 784 N sing N 785 N sing N 786 N doub N 787 N sing N 788 N sing N 789 N sing N 790 N sing N 791 N sing N 792 N sing N 793 N sing N 794 N sing N 795 N sing N 796 N sing N 797 N sing N 798 N sing N 799 N sing N 800 N sing N 801 N sing N 802 N sing N 803 N sing N 804 N sing N 805 N sing N 806 N sing N 807 N sing N 808 N sing N 809 N sing N 810 N sing N 811 N sing N 812 N sing N 813 N sing N 814 N sing N 815 N sing N 816 N sing N 817 N sing N 818 N sing N 819 N sing N 820 N sing N 821 N sing N 822 N sing N 823 N sing N 824 N sing N 825 N sing N 826 N sing N 827 N sing N 828 N sing N 829 N sing N 830 N sing N 831 N sing N 832 N sing N 833 N sing N 834 N doub N 835 N sing N 836 N sing N 837 N sing N 838 N sing N 839 N sing N 840 N sing N 841 N sing N 842 N sing N 843 N sing N 844 N sing N 845 N sing N 846 N sing N 847 N sing N 848 N sing N 849 N sing N 850 N sing N 851 N sing N 852 N sing N 853 N doub N 854 N sing N 855 N sing N 856 N sing N 857 N sing Y 858 N doub Y 859 N sing Y 860 N sing N 861 N sing Y 862 N doub N 863 N sing Y 864 N doub N 865 N sing Y 866 N sing N 867 N sing N 868 N sing N 869 N sing N 870 N sing N 871 N sing N 872 N sing N 873 N sing N 874 N sing N 875 N sing N 876 N doub N 877 N sing N 878 N sing N 879 N sing N 880 N sing N 881 N sing N 882 N sing N 883 N sing N 884 N sing N 885 N sing N 886 N sing N 887 N sing N 888 N sing N 889 N sing N 890 N sing N 891 N sing N 892 N sing N 893 N sing N 894 N sing N 895 N sing N 896 N sing N 897 N sing N 898 N sing N 899 N sing N 900 N doub N 901 N sing N 902 N sing N 903 E doub N 904 N sing N 905 N sing N 906 N sing N 907 E doub N 908 N sing N 909 N sing N 910 N sing N 911 E doub N 912 N sing N 913 N sing N 914 N sing N 915 E doub N 916 N sing N 917 N sing N 918 N sing N 919 N doub N 920 N sing N 921 N sing N 922 N sing N 923 N sing N 924 N sing N 925 N sing N 926 N sing N 927 N sing N 928 N sing N 929 N sing N 930 N sing N 931 N sing N 932 N sing N 933 N sing N 934 N sing N 935 N sing N 936 N sing N 937 N sing N 938 N sing N 939 N sing N 940 N sing N 941 N sing N 942 N doub N 943 N sing N 944 N sing N 945 N sing N 946 N sing N 947 N sing N 948 N sing N 949 N sing N 950 N sing N 951 N sing N 952 N sing N 953 N sing N 954 N sing N 955 N doub N 956 N sing N 957 N sing N 958 N sing N 959 N sing N 960 N sing N 961 N sing N 962 N sing N 963 N sing N 964 N sing N 965 N sing N 966 N sing N 967 N sing N 968 N sing N 969 N sing N 970 N sing N 971 N doub N 972 N sing N 973 N sing N 974 N sing N 975 N sing Y 976 N doub Y 977 N sing Y 978 N sing N 979 N sing Y 980 N doub Y 981 N sing Y 982 N sing N 983 N sing Y 984 N sing Y 985 N doub N 986 N sing Y 987 N doub N 988 N sing Y 989 N sing N 990 N sing N 991 N sing N 992 N sing N 993 N sing N 994 N sing N 995 N sing N 996 N sing N 997 N sing N 998 N sing N 999 N doub N 1000 N sing N 1001 N sing N 1002 N sing N 1003 N sing Y 1004 N doub Y 1005 N sing Y 1006 N sing N 1007 N sing Y 1008 N doub N 1009 N sing Y 1010 N doub N 1011 N sing Y 1012 N sing N 1013 N sing N 1014 N sing N 1015 N sing N 1016 N sing N 1017 N sing N 1018 N sing N 1019 N sing N 1020 N sing N 1021 N sing N 1022 N sing N 1023 N doub N 1024 N sing N 1025 N sing N 1026 N sing N 1027 N sing N 1028 N sing N 1029 N sing N 1030 N sing N 1031 N sing N 1032 N sing N 1033 N sing N 1034 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 341 1023 10.1016/J.JMB.2004.06.080 15328615 Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix 2004 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 D55 1251 10.1107/S090744499900503X 10393291 Specific Lipid-Protein Interactions in a Novel Honeycomb Lattice Structure of Bacteriorhodopsin 1999 10.2210/pdb1dze/pdb pdb_00001dze 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS IMAGE PLATE 1998-11-18 RIGAKU IMAGE PLATE SI(111) SINGLE WAVELENGTH M x-ray 1 0.70 1.0 BL44B2 SPring-8 0.70 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 5 LIPIDS AND 18 WATER MOLECULES 26814.412 BACTERIORHODOPSIN (M INTERMEDIATE) 1 nat polymer 504.438 beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose 1 man branched 284.436 RETINAL 1 syn non-polymer 733.137 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL 1 syn non-polymer 653.157 2,3-DI-PHYTANYL-GLYCEROL 2 syn non-polymer 885.179 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE 1 syn non-polymer 807.215 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL 1 syn non-polymer 18.015 water 18 nat water no no QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA GDGAAATS QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA GDGAAATS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HALOBACTERIUM SALINARIUM sample CELL MEMBRANE 2242 HALOBACTERIUM SALINARIUM JW3 1 3.17 61.19 DATA WERE COLLECTED USING THE OSCILLATION METHOD VAPOR DIFFUSION 5.20 THE CRYSTALLIZATION CONSISTS OF TWO STEPS. FIRST, A MIXTURE OF 5 MG/ML PURPLE MEMBRANE, 0.25% OTG, 1 M AMMONIUM SULFATE, 0.16 M NACL, 0.04 M SODIUM CITRATE (PH5.2) , 0.04% NAN3 WAS INCUBATED AND 15% TREHALOSE AT 305K FOR 5 DAYS. THIS RESULTED IN THE FORMATION OF SPHERICAL VESICLES WITH A DIAMETER OF 50 NM. AFTER SEDIMENTAL MATERIALS WERE REMOVED BY CENTRIFUGATION (4000G X 10 MIN), A SUSPENSION OF THE SPHERICAL VESICLES WAS COOLED TO 278K AND CONCENTRATED BY VAPOR DIFFUSION AGAINST A RESERVOIR SOLUTION CONTAINING 2.0 M AMMONIUM SULFATE 0.08M SODIUM CITRATE (PH 5.2) AND 30% TREHALOSE. INCUBATION FOR A COUPLE OF MONTHS YIELDED HEXAGONAL CRYSTALS. exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_conn atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Data collection Derived calculations Experimental preparation Other Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Refinement description Structure summary 1 0 2000-08-16 1 1 2011-05-07 1 2 2011-07-13 1 3 2019-03-06 2 0 2020-07-29 2 1 2023-12-06 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _struct_conn.pdbx_leaving_atom_flag _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_unobs_or_zero_occ_atoms.label_asym_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag A GLC 400 n B GLC 1 A MAN 410 n B MAN 2 A GAL 420 n B GAL 3 DGalpb b-D-galactopyranose b-D-Galp Gal DGlcpa a-D-glucopyranose a-D-Glcp Glc DManpa a-D-mannopyranose a-D-Manp Man BACTERIORHODOPSIN/LIPID COMPLEX AT 1.55 A RESOLUTION (GROUND STATE WILD TYPE "BR") BACTERIORHODOPSIN, HALOBACTERIUM HALOBIUM, ELECTRON DIFFRACTION CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN PURPLE MEMBRANE X-RAY STRUCTURE OF THE BACTERIORHODOPSIN TRIMER/LIPID COMPLEX RHODOPSIN (7-HELIX BUNDLE) COMPLEX WITH ALL-TRANS RETINAL (THEORETICAL MODEL) BACTERIORHODOPSIN (7-HELIX BUNDLE) WITH 13-CIS RETINAL (THEORETICAL MODEL) BACTERIORHODOPSIN (PROTEOLYTIC FRAGMENT 1 - 71, SOLUBILIZED IN SDS MICELLES) (NMR, 12 STRUCTURES) BACTERIORHODOPSIN (PROTEOLYTIC FRAGMENT 1 - 71, SOLUBILIZED IN METHANOL-CHLOROFORM) (NMR, 12 STRUCTURES) BACTERIORHODOPSIN (FRAGMENT 163-231) (NMR, 14 STRUCTURES) X-RAY STRUCTURE OF BACTERIORHODOPSIN FROM MICROCRYSTALS GROWN IN LIPIDIC CUBIC PHASES STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY STRUCTURE OF BACTERIORHODOPSIN AT 100 K PDBE Y PDBE 2000-02-25 REL oligosaccharide DGalpb1-6DManpa1-2DGlcpa1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1a_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3/a2-b1_b6-c1 2 PDB2Glycan 1.1.0 WURCS [][D-1-deoxy-Glcp]{[(2+1)][a-D-Manp]{[(6+1)][b-D-Galp]{}}} 2 PDB-CARE LINUCS C1 O2 MAN GLC 2 1 2 O1 HO2 sing C1 O6 GAL MAN 3 2 2 O1 HO6 sing n n n RET RETINAL L1P 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL L2P 2,3-DI-PHYTANYL-GLYCEROL L3P 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE L4P 3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL HOH water 1QM8 PDB ENTRY 1QM8 PDB experimental model RET 250 3 RET RET 250 A L1P 260 4 L1P L1P 260 A L2P 270 5 L2P L2P 270 A L3P 280 6 L3P L3P 280 A L4P 290 7 L4P L4P 290 A L2P 300 5 L2P L2P 300 A HOH 2001 8 HOH HOH 2001 A HOH 2002 8 HOH HOH 2002 A HOH 2003 8 HOH HOH 2003 A HOH 2004 8 HOH HOH 2004 A HOH 2005 8 HOH HOH 2005 A HOH 2006 8 HOH HOH 2006 A HOH 2007 8 HOH HOH 2007 A HOH 2008 8 HOH HOH 2008 A HOH 2009 8 HOH HOH 2009 A HOH 2010 8 HOH HOH 2010 A HOH 2011 8 HOH HOH 2011 A HOH 2012 8 HOH HOH 2012 A HOH 2013 8 HOH HOH 2013 A HOH 2014 8 HOH HOH 2014 A HOH 2015 8 HOH HOH 2015 A HOH 2016 8 HOH HOH 2016 A HOH 2017 8 HOH HOH 2017 A HOH 2018 8 HOH HOH 2018 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A GLY 6 n 6 GLY 6 A ARG 7 n 7 ARG 7 A PRO 8 n 8 PRO 8 A GLU 9 n 9 GLU 9 A TRP 10 n 10 TRP 10 A ILE 11 n 11 ILE 11 A TRP 12 n 12 TRP 12 A LEU 13 n 13 LEU 13 A ALA 14 n 14 ALA 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A THR 17 n 17 THR 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A MET 20 n 20 MET 20 A GLY 21 n 21 GLY 21 A LEU 22 n 22 LEU 22 A GLY 23 n 23 GLY 23 A THR 24 n 24 THR 24 A LEU 25 n 25 LEU 25 A TYR 26 n 26 TYR 26 A PHE 27 n 27 PHE 27 A LEU 28 n 28 LEU 28 A VAL 29 n 29 VAL 29 A LYS 30 n 30 LYS 30 A GLY 31 n 31 GLY 31 A MET 32 n 32 MET 32 A GLY 33 n 33 GLY 33 A VAL 34 n 34 VAL 34 A SER 35 n 35 SER 35 A ASP 36 n 36 ASP 36 A PRO 37 n 37 PRO 37 A ASP 38 n 38 ASP 38 A ALA 39 n 39 ALA 39 A LYS 40 n 40 LYS 40 A LYS 41 n 41 LYS 41 A PHE 42 n 42 PHE 42 A TYR 43 n 43 TYR 43 A ALA 44 n 44 ALA 44 A ILE 45 n 45 ILE 45 A THR 46 n 46 THR 46 A THR 47 n 47 THR 47 A LEU 48 n 48 LEU 48 A VAL 49 n 49 VAL 49 A PRO 50 n 50 PRO 50 A ALA 51 n 51 ALA 51 A ILE 52 n 52 ILE 52 A ALA 53 n 53 ALA 53 A PHE 54 n 54 PHE 54 A THR 55 n 55 THR 55 A MET 56 n 56 MET 56 A TYR 57 n 57 TYR 57 A LEU 58 n 58 LEU 58 A SER 59 n 59 SER 59 A MET 60 n 60 MET 60 A LEU 61 n 61 LEU 61 A LEU 62 n 62 LEU 62 A GLY 63 n 63 GLY 63 A TYR 64 n 64 TYR 64 A GLY 65 n 65 GLY 65 A LEU 66 n 66 LEU 66 A THR 67 n 67 THR 67 A MET 68 n 68 MET 68 A VAL 69 n 69 VAL 69 A PRO 70 n 70 PRO 70 A PHE 71 n 71 PHE 71 A GLY 72 n 72 GLY 72 A GLY 73 n 73 GLY 73 A GLU 74 n 74 GLU 74 A GLN 75 n 75 GLN 75 A ASN 76 n 76 ASN 76 A PRO 77 n 77 PRO 77 A ILE 78 n 78 ILE 78 A TYR 79 n 79 TYR 79 A TRP 80 n 80 TRP 80 A ALA 81 n 81 ALA 81 A ARG 82 n 82 ARG 82 A TYR 83 n 83 TYR 83 A ALA 84 n 84 ALA 84 A ASP 85 n 85 ASP 85 A TRP 86 n 86 TRP 86 A LEU 87 n 87 LEU 87 A PHE 88 n 88 PHE 88 A THR 89 n 89 THR 89 A THR 90 n 90 THR 90 A PRO 91 n 91 PRO 91 A LEU 92 n 92 LEU 92 A LEU 93 n 93 LEU 93 A LEU 94 n 94 LEU 94 A LEU 95 n 95 LEU 95 A ASP 96 n 96 ASP 96 A LEU 97 n 97 LEU 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A LEU 100 n 100 LEU 100 A VAL 101 n 101 VAL 101 A ASP 102 n 102 ASP 102 A ALA 103 n 103 ALA 103 A ASP 104 n 104 ASP 104 A GLN 105 n 105 GLN 105 A GLY 106 n 106 GLY 106 A THR 107 n 107 THR 107 A ILE 108 n 108 ILE 108 A LEU 109 n 109 LEU 109 A ALA 110 n 110 ALA 110 A LEU 111 n 111 LEU 111 A VAL 112 n 112 VAL 112 A GLY 113 n 113 GLY 113 A ALA 114 n 114 ALA 114 A ASP 115 n 115 ASP 115 A GLY 116 n 116 GLY 116 A ILE 117 n 117 ILE 117 A MET 118 n 118 MET 118 A ILE 119 n 119 ILE 119 A GLY 120 n 120 GLY 120 A THR 121 n 121 THR 121 A GLY 122 n 122 GLY 122 A LEU 123 n 123 LEU 123 A VAL 124 n 124 VAL 124 A GLY 125 n 125 GLY 125 A ALA 126 n 126 ALA 126 A LEU 127 n 127 LEU 127 A THR 128 n 128 THR 128 A LYS 129 n 129 LYS 129 A VAL 130 n 130 VAL 130 A TYR 131 n 131 TYR 131 A SER 132 n 132 SER 132 A TYR 133 n 133 TYR 133 A ARG 134 n 134 ARG 134 A PHE 135 n 135 PHE 135 A VAL 136 n 136 VAL 136 A TRP 137 n 137 TRP 137 A TRP 138 n 138 TRP 138 A ALA 139 n 139 ALA 139 A ILE 140 n 140 ILE 140 A SER 141 n 141 SER 141 A THR 142 n 142 THR 142 A ALA 143 n 143 ALA 143 A ALA 144 n 144 ALA 144 A MET 145 n 145 MET 145 A LEU 146 n 146 LEU 146 A TYR 147 n 147 TYR 147 A ILE 148 n 148 ILE 148 A LEU 149 n 149 LEU 149 A TYR 150 n 150 TYR 150 A VAL 151 n 151 VAL 151 A LEU 152 n 152 LEU 152 A PHE 153 n 153 PHE 153 A PHE 154 n 154 PHE 154 A GLY 155 n 155 GLY 155 A PHE 156 n 156 PHE 156 A THR 157 n 157 THR 157 A SER 158 n 158 SER 158 A LYS 159 n 159 LYS 159 A ALA 160 n 160 ALA 160 A GLU 161 n 161 GLU 161 A SER 162 n 162 SER 162 A MET 163 n 163 MET 163 A ARG 164 n 164 ARG 164 A PRO 165 n 165 PRO 165 A GLU 166 n 166 GLU 166 A VAL 167 n 167 VAL 167 A ALA 168 n 168 ALA 168 A SER 169 n 169 SER 169 A THR 170 n 170 THR 170 A PHE 171 n 171 PHE 171 A LYS 172 n 172 LYS 172 A VAL 173 n 173 VAL 173 A LEU 174 n 174 LEU 174 A ARG 175 n 175 ARG 175 A ASN 176 n 176 ASN 176 A VAL 177 n 177 VAL 177 A THR 178 n 178 THR 178 A VAL 179 n 179 VAL 179 A VAL 180 n 180 VAL 180 A LEU 181 n 181 LEU 181 A TRP 182 n 182 TRP 182 A SER 183 n 183 SER 183 A ALA 184 n 184 ALA 184 A TYR 185 n 185 TYR 185 A PRO 186 n 186 PRO 186 A VAL 187 n 187 VAL 187 A VAL 188 n 188 VAL 188 A TRP 189 n 189 TRP 189 A LEU 190 n 190 LEU 190 A ILE 191 n 191 ILE 191 A GLY 192 n 192 GLY 192 A SER 193 n 193 SER 193 A GLU 194 n 194 GLU 194 A GLY 195 n 195 GLY 195 A ALA 196 n 196 ALA 196 A GLY 197 n 197 GLY 197 A ILE 198 n 198 ILE 198 A VAL 199 n 199 VAL 199 A PRO 200 n 200 PRO 200 A LEU 201 n 201 LEU 201 A ASN 202 n 202 ASN 202 A ILE 203 n 203 ILE 203 A GLU 204 n 204 GLU 204 A THR 205 n 205 THR 205 A LEU 206 n 206 LEU 206 A LEU 207 n 207 LEU 207 A PHE 208 n 208 PHE 208 A MET 209 n 209 MET 209 A VAL 210 n 210 VAL 210 A LEU 211 n 211 LEU 211 A ASP 212 n 212 ASP 212 A VAL 213 n 213 VAL 213 A SER 214 n 214 SER 214 A ALA 215 n 215 ALA 215 A LYS 216 n 216 LYS 216 A VAL 217 n 217 VAL 217 A GLY 218 n 218 GLY 218 A PHE 219 n 219 PHE 219 A GLY 220 n 220 GLY 220 A LEU 221 n 221 LEU 221 A ILE 222 n 222 ILE 222 A LEU 223 n 223 LEU 223 A LEU 224 n 224 LEU 224 A ARG 225 n 225 ARG 225 A SER 226 n 226 SER 226 A ARG 227 n 227 ARG 227 A ALA 228 n 228 ALA 228 A ILE 229 n 229 ILE 229 A PHE 230 n 230 PHE 230 A n 231 231 A n 232 232 A n 233 233 A n 234 234 A n 235 235 A n 236 236 A n 237 237 A n 238 238 A n 239 239 A n 240 240 A n 241 241 A n 242 242 A n 243 243 A n 244 244 A n 245 245 A n 246 246 A n 247 247 A n 248 248 A software_defined_assembly PQS 3 trimeric 10290 -79.2 31220 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 51.2000000000 88.6810013475 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 102.4000000000 0.0000000000 0.0000000000 A O THR 67 A O THR 67 A N ILE 78 A N ILE 78 1 A CG ARG 227 A CG ARG 227 1 Y 1 A CD ARG 227 A CD ARG 227 1 Y 1 A NE ARG 227 A NE ARG 227 1 Y 1 A CZ ARG 227 A CZ ARG 227 1 Y 1 A NH1 ARG 227 A NH1 ARG 227 1 Y 1 A NH2 ARG 227 A NH2 ARG 227 1 Y 1 A C51 L1P 260 D C51 L1P 1 1 N 1 A C52 L1P 260 D C52 L1P 1 1 N 1 A C53 L1P 260 D C53 L1P 1 1 N 1 A C54 L1P 260 D C54 L1P 1 1 N 1 A C55 L1P 260 D C55 L1P 1 1 N 1 A C56 L1P 260 D C56 L1P 1 1 N 1 A C57 L1P 260 D C57 L1P 1 1 N 1 A C58 L1P 260 D C58 L1P 1 1 N 1 A C59 L1P 260 D C59 L1P 1 1 N 1 A C60 L1P 260 D C60 L1P 1 1 N 1 A C58 L2P 270 E C58 L2P 1 1 N 1 A C59 L2P 270 E C59 L2P 1 1 N 1 A C60 L2P 270 E C60 L2P 1 1 N 1 A C22 L3P 280 F C22 L3P 1 1 N 1 A C23 L3P 280 F C23 L3P 1 1 N 1 A C24 L3P 280 F C24 L3P 1 1 N 1 A C25 L3P 280 F C25 L3P 1 1 N 1 A C26 L3P 280 F C26 L3P 1 1 N 1 A C27 L3P 280 F C27 L3P 1 1 N 1 A C28 L3P 280 F C28 L3P 1 1 N 1 A C29 L3P 280 F C29 L3P 1 1 N 1 A C30 L3P 280 F C30 L3P 1 1 N 1 A C51 L3P 280 F C51 L3P 1 1 N 1 A C52 L3P 280 F C52 L3P 1 1 N 1 A C53 L3P 280 F C53 L3P 1 1 N 1 A C54 L3P 280 F C54 L3P 1 1 N 1 A C55 L3P 280 F C55 L3P 1 1 N 1 A C56 L3P 280 F C56 L3P 1 1 N 1 A C57 L3P 280 F C57 L3P 1 1 N 1 A C58 L3P 280 F C58 L3P 1 1 N 1 A C59 L3P 280 F C59 L3P 1 1 N 1 A C60 L3P 280 F C60 L3P 1 1 N 1 A O6 L4P 290 G O6 L4P 1 1 N 1 A C48 L4P 290 G C48 L4P 1 1 N 1 A C49 L4P 290 G C49 L4P 1 1 N 1 A C50 L4P 290 G C50 L4P 1 1 N 1 A C51 L4P 290 G C51 L4P 1 1 N 1 A C52 L4P 290 G C52 L4P 1 1 N 1 A C53 L4P 290 G C53 L4P 1 1 N 1 A C54 L4P 290 G C54 L4P 1 1 N 1 A C55 L4P 290 G C55 L4P 1 1 N 1 A C56 L4P 290 G C56 L4P 1 1 N 1 A C57 L4P 290 G C57 L4P 1 1 N 1 A C58 L4P 290 G C58 L4P 1 1 N 1 A C59 L4P 290 G C59 L4P 1 1 N 1 A C60 L4P 290 G C60 L4P 1 1 N 1 A C18 L2P 300 H C18 L2P 1 1 N 1 A C19 L2P 300 H C19 L2P 1 1 N 1 A C20 L2P 300 H C20 L2P 1 1 N 1 A C21 L2P 300 H C21 L2P 1 1 N 1 A C22 L2P 300 H C22 L2P 1 1 N 1 A C23 L2P 300 H C23 L2P 1 1 N 1 A C24 L2P 300 H C24 L2P 1 1 N 1 A C25 L2P 300 H C25 L2P 1 1 N 1 A C26 L2P 300 H C26 L2P 1 1 N 1 A C27 L2P 300 H C27 L2P 1 1 N 1 A C28 L2P 300 H C28 L2P 1 1 N 1 A C29 L2P 300 H C29 L2P 1 1 N 1 A C30 L2P 300 H C30 L2P 1 1 N 1 A C58 L2P 300 H C58 L2P 1 1 N 1 A C59 L2P 300 H C59 L2P 1 1 N 1 A C60 L2P 300 H C60 L2P 1 1 N 1 A GLN 1 A GLN 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A GLN 3 A GLN 3 1 Y 1 A ILE 4 A ILE 4 1 Y 1 A THR 5 A THR 5 1 Y 1 A GLY 231 A GLY 231 1 Y 1 A GLU 232 A GLU 232 1 Y 1 A ALA 233 A ALA 233 1 Y 1 A GLU 234 A GLU 234 1 Y 1 A ALA 235 A ALA 235 1 Y 1 A PRO 236 A PRO 236 1 Y 1 A GLU 237 A GLU 237 1 Y 1 A PRO 238 A PRO 238 1 Y 1 A SER 239 A SER 239 1 Y 1 A ALA 240 A ALA 240 1 Y 1 A GLY 241 A GLY 241 1 Y 1 A ASP 242 A ASP 242 1 Y 1 A GLY 243 A GLY 243 1 Y 1 A ALA 244 A ALA 244 1 Y 1 A ALA 245 A ALA 245 1 Y 1 A ALA 246 A ALA 246 1 Y 1 A THR 247 A THR 247 1 Y 1 A SER 248 A SER 248 1 Y 1 A ARG 7 -156.68 -58.06 1 A SER 162 -84.28 31.94 1 A ALA 196 -65.44 81.94 PARHCSDX.PRO TOPHCSDX.PRO RET_CIS.PAR RET_CIS.TOP DPG.PAR DPG.TOP GLC.PAR GLC.TOP 36.0 -19.7 -9.8 0 -19.7 0 13.4 THE C-TERMINAL RESIDUES WERE NOT SEEN IN THE DENSITY MAPS 0.283 0.257 0.257 2.5 8 561 11017 5.0 90.8 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1QM8 2.5 8 18 2004 247 0 1739 0.006 1.22 20.1 1.22 0.437 0.371 2.61 41 756 8 5 2.500 50.000 1DZE 11480 0.000 0.06900 1 14.400 91.7 2.50 2.59 0.30400 1 55.2 refinement X-PLOR 3.851 data reduction MOSFLM data scaling SCALA phasing X-PLOR Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 5 N N 8 N N A GLU 9 A GLU 9 HELX_P A MET 32 A MET 32 1 1 24 A ASP 38 A ASP 38 HELX_P A LEU 62 A LEU 62 1 2 25 A TRP 80 A TRP 80 HELX_P A ASP 102 A ASP 102 1 3 23 A ASP 104 A ASP 104 HELX_P A THR 128 A THR 128 1 4 25 A TYR 133 A TYR 133 HELX_P A PHE 154 A PHE 154 1 5 22 A GLY 155 A GLY 155 HELX_P A SER 162 A SER 162 1 6 8 A ARG 164 A ARG 164 HELX_P A SER 183 A SER 183 1 7 20 A ALA 184 A ALA 184 HELX_P A GLY 192 A GLY 192 1 8 9 A PRO 200 A PRO 200 HELX_P A ARG 225 A ARG 225 1 9 26 covale 1.343 one A LYS 216 A NZ LYS 216 1_555 A RET 250 C C15 RET 1_555 covale 1.430 one A L2P 270 E O3 L2P 1_555 B GLC 1 B C1 GLC 1_555 covale 1.424 both B GLC 1 B O2 GLC 1_555 B MAN 2 B C1 MAN 1_555 covale 1.445 both B MAN 2 B O6 MAN 1_555 B GAL 3 B C1 GAL 1_555 BACTERIORHODOPSIN BACTERIORHODOPSIN, PROTON PUMP, MEMBRANE PROTEIN, RETINAL PROTEIN, PHOTORECEPTOR, REACTION INTERMEDIATE, HALOBACTERIA, ION PUMP, HELIX, SLIDING BACR_HALHA UNP 1 P02945 14 261 1DZE 1 248 P02945 A 1 1 248 2 anti-parallel A LEU 66 A LEU 66 A PRO 70 A PRO 70 A GLN 75 A GLN 75 A TYR 79 A TYR 79 177 P 6 2 2