0.009766
0.005638
0.000000
0.000000
0.011276
0.000000
0.000000
0.000000
0.008905
0.00000
0.00000
0.00000
Takeda, K.
Matsui, Y.
Sato, H.
Hino, T.
Kanamori, E.
Okumura, H.
Yamane, T.
Iizuka, T.
Kamiya, N.
Adachi, S.
Kouyama, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
102.400
102.400
112.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C43 H89 O6 P
733.137
3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL
1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCERO-3-PHOSPHATE
non-polymer
C43 H88 O3
653.157
2,3-DI-PHYTANYL-GLYCEROL
1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL
non-polymer
C46 H94 O11 P2 -2
885.179
2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE
non-polymer
C46 H95 O8 P
807.215
3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL
2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
R
C
N
76
S
C
N
77
R
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
S
C
N
99
R
C
N
100
S
C
N
101
S
C
N
102
R
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
S
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
O
N
200
N
C
N
201
N
O
N
202
N
P
N
203
N
O
N
204
N
O
N
205
N
O
N
206
N
C
N
207
N
C
N
208
R
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
R
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
R
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
R
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
R
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
R
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
R
C
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
C
N
348
R
C
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
R
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
R
C
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
R
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
C
N
373
R
C
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
C
N
470
S
C
N
471
N
C
N
472
N
C
N
473
R
C
N
474
N
C
N
475
N
O
N
476
N
O
N
477
N
O
N
478
N
O
N
479
N
O
N
480
N
O
N
481
N
O
N
482
N
O
N
483
N
O
N
484
N
O
N
485
N
O
N
486
N
P
N
487
N
P
N
488
N
C
N
489
N
C
N
490
R
C
N
491
N
C
N
492
N
C
N
493
N
C
N
494
N
C
N
495
R
C
N
496
N
C
N
497
N
C
N
498
N
C
N
499
N
C
N
500
R
C
N
501
N
C
N
502
N
C
N
503
N
C
N
504
N
C
N
505
N
C
N
506
N
C
N
507
N
C
N
508
N
C
N
509
N
C
N
510
R
C
N
511
N
C
N
512
N
C
N
513
N
C
N
514
N
C
N
515
R
C
N
516
N
C
N
517
N
C
N
518
N
C
N
519
N
C
N
520
R
C
N
521
N
C
N
522
N
C
N
523
N
C
N
524
N
C
N
525
N
C
N
526
N
C
N
527
N
C
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
C
N
623
S
C
N
624
N
C
N
625
N
C
N
626
R
C
N
627
N
C
N
628
N
O
N
629
N
O
N
630
N
O
N
631
N
O
N
632
N
O
N
633
N
O
N
634
N
O
N
635
N
O
N
636
S
P
N
637
N
C
N
638
N
C
N
639
R
C
N
640
N
C
N
641
N
C
N
642
N
C
N
643
N
C
N
644
R
C
N
645
N
C
N
646
N
C
N
647
N
C
N
648
N
C
N
649
R
C
N
650
N
C
N
651
N
C
N
652
N
C
N
653
N
C
N
654
N
C
N
655
N
C
N
656
N
C
N
657
N
C
N
658
N
C
N
659
R
C
N
660
N
C
N
661
N
C
N
662
N
C
N
663
N
C
N
664
R
C
N
665
N
C
N
666
N
C
N
667
N
C
N
668
N
C
N
669
R
C
N
670
N
C
N
671
N
C
N
672
N
C
N
673
N
C
N
674
N
C
N
675
N
C
N
676
N
C
N
677
N
H
N
678
N
H
N
679
N
H
N
680
N
H
N
681
N
H
N
682
N
H
N
683
N
H
N
684
N
H
N
685
N
H
N
686
N
H
N
687
N
H
N
688
N
H
N
689
N
H
N
690
N
H
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
H
N
697
N
H
N
698
N
H
N
699
N
H
N
700
N
H
N
701
N
H
N
702
N
H
N
703
N
H
N
704
N
H
N
705
N
H
N
706
N
H
N
707
N
H
N
708
N
H
N
709
N
H
N
710
N
H
N
711
N
H
N
712
N
H
N
713
N
H
N
714
N
H
N
715
N
H
N
716
N
H
N
717
N
H
N
718
N
H
N
719
N
H
N
720
N
H
N
721
N
H
N
722
N
H
N
723
N
H
N
724
N
H
N
725
N
H
N
726
N
H
N
727
N
H
N
728
N
H
N
729
N
H
N
730
N
H
N
731
N
H
N
732
N
H
N
733
N
H
N
734
N
H
N
735
N
H
N
736
N
H
N
737
N
H
N
738
N
H
N
739
N
H
N
740
N
H
N
741
N
H
N
742
N
H
N
743
N
H
N
744
N
H
N
745
N
H
N
746
N
H
N
747
N
H
N
748
N
H
N
749
N
H
N
750
N
H
N
751
N
H
N
752
N
H
N
753
N
H
N
754
N
H
N
755
N
H
N
756
N
H
N
757
N
H
N
758
N
H
N
759
N
H
N
760
N
H
N
761
N
H
N
762
N
H
N
763
N
H
N
764
N
H
N
765
N
H
N
766
N
H
N
767
N
H
N
768
N
H
N
769
N
H
N
770
N
H
N
771
N
H
N
772
N
N
N
773
S
C
N
774
N
C
N
775
N
O
N
776
N
C
N
777
N
C
N
778
N
C
N
779
N
C
N
780
N
O
N
781
N
H
N
782
N
H
N
783
N
H
N
784
N
H
N
785
N
H
N
786
N
H
N
787
N
H
N
788
N
H
N
789
N
H
N
790
N
H
N
791
N
H
N
792
N
H
N
793
N
H
N
794
N
N
N
795
S
C
N
796
N
C
N
797
N
O
N
798
N
C
N
799
N
C
N
800
N
C
N
801
N
C
N
802
N
N
N
803
N
O
N
804
N
H
N
805
N
H
N
806
N
H
N
807
N
H
N
808
N
H
N
809
N
H
N
810
N
H
N
811
N
H
N
812
N
H
N
813
N
H
N
814
N
H
N
815
N
H
N
816
N
H
N
817
N
H
N
818
N
H
N
819
S
C
N
820
S
C
N
821
S
C
N
822
S
C
N
823
R
C
N
824
N
C
N
825
N
O
N
826
N
O
N
827
N
O
N
828
N
O
N
829
N
O
N
830
N
O
N
831
N
H
N
832
N
H
N
833
N
H
N
834
N
H
N
835
N
H
N
836
N
H
N
837
N
H
N
838
N
H
N
839
N
H
N
840
N
H
N
841
N
H
N
842
N
H
N
843
N
N
N
844
S
C
N
845
N
C
N
846
N
O
N
847
N
C
N
848
N
C
N
849
N
S
N
850
N
C
N
851
N
O
N
852
N
H
N
853
N
H
N
854
N
H
N
855
N
H
N
856
N
H
N
857
N
H
N
858
N
H
N
859
N
H
N
860
N
H
N
861
N
H
N
862
N
H
N
863
N
N
N
864
S
C
N
865
N
C
N
866
N
O
N
867
N
C
Y
868
N
C
Y
869
N
C
Y
870
N
C
Y
871
N
C
Y
872
N
C
Y
873
N
C
N
874
N
O
N
875
N
H
N
876
N
H
N
877
N
H
N
878
N
H
N
879
N
H
N
880
N
H
N
881
N
H
N
882
N
H
N
883
N
H
N
884
N
H
N
885
N
H
N
886
N
N
N
887
S
C
N
888
N
C
N
889
N
O
N
890
N
C
N
891
N
C
N
892
N
C
N
893
N
O
N
894
N
H
N
895
N
H
N
896
N
H
N
897
N
H
N
898
N
H
N
899
N
H
N
900
N
H
N
901
N
H
N
902
N
H
N
903
N
C
N
904
N
C
N
905
N
C
N
906
N
C
N
907
N
C
N
908
N
C
N
909
N
C
N
910
N
C
N
911
N
C
N
912
N
C
N
913
N
C
N
914
N
C
N
915
N
C
N
916
N
C
N
917
N
C
N
918
N
O
N
919
N
C
N
920
N
C
N
921
N
C
N
922
N
C
N
923
N
C
N
924
N
H
N
925
N
H
N
926
N
H
N
927
N
H
N
928
N
H
N
929
N
H
N
930
N
H
N
931
N
H
N
932
N
H
N
933
N
H
N
934
N
H
N
935
N
H
N
936
N
H
N
937
N
H
N
938
N
H
N
939
N
H
N
940
N
H
N
941
N
H
N
942
N
H
N
943
N
H
N
944
N
H
N
945
N
H
N
946
N
H
N
947
N
H
N
948
N
H
N
949
N
H
N
950
N
H
N
951
N
H
N
952
N
N
N
953
S
C
N
954
N
C
N
955
N
O
N
956
N
C
N
957
N
O
N
958
N
O
N
959
N
H
N
960
N
H
N
961
N
H
N
962
N
H
N
963
N
H
N
964
N
H
N
965
N
H
N
966
N
N
N
967
S
C
N
968
N
C
N
969
N
O
N
970
R
C
N
971
N
O
N
972
N
C
N
973
N
O
N
974
N
H
N
975
N
H
N
976
N
H
N
977
N
H
N
978
N
H
N
979
N
H
N
980
N
H
N
981
N
H
N
982
N
H
N
983
N
N
N
984
S
C
N
985
N
C
N
986
N
O
N
987
N
C
Y
988
N
C
Y
989
N
C
Y
990
N
C
Y
991
N
N
Y
992
N
C
Y
993
N
C
Y
994
N
C
Y
995
N
C
Y
996
N
C
N
997
N
O
N
998
N
H
N
999
N
H
N
1000
N
H
N
1001
N
H
N
1002
N
H
N
1003
N
H
N
1004
N
H
N
1005
N
H
N
1006
N
H
N
1007
N
H
N
1008
N
H
N
1009
N
H
N
1010
N
N
N
1011
S
C
N
1012
N
C
N
1013
N
O
N
1014
N
C
Y
1015
N
C
Y
1016
N
C
Y
1017
N
C
Y
1018
N
C
Y
1019
N
C
Y
1020
N
C
N
1021
N
O
N
1022
N
O
N
1023
N
H
N
1024
N
H
N
1025
N
H
N
1026
N
H
N
1027
N
H
N
1028
N
H
N
1029
N
H
N
1030
N
H
N
1031
N
H
N
1032
N
H
N
1033
N
H
N
1034
N
N
N
1035
S
C
N
1036
N
C
N
1037
N
O
N
1038
N
C
N
1039
N
C
N
1040
N
C
N
1041
N
O
N
1042
N
H
N
1043
N
H
N
1044
N
H
N
1045
N
H
N
1046
N
H
N
1047
N
H
N
1048
N
H
N
1049
N
H
N
1050
N
H
N
1051
N
H
N
1052
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
doub
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
sing
N
685
N
sing
N
686
N
sing
N
687
N
sing
N
688
N
sing
N
689
N
sing
N
690
N
sing
N
691
N
sing
N
692
N
sing
N
693
N
sing
N
694
N
sing
N
695
N
sing
N
696
N
sing
N
697
N
sing
N
698
N
sing
N
699
N
sing
N
700
N
sing
N
701
N
sing
N
702
N
sing
N
703
N
sing
N
704
N
sing
N
705
N
sing
N
706
N
sing
N
707
N
sing
N
708
N
sing
N
709
N
sing
N
710
N
sing
N
711
N
sing
N
712
N
sing
N
713
N
sing
N
714
N
sing
N
715
N
sing
N
716
N
sing
N
717
N
sing
N
718
N
sing
N
719
N
sing
N
720
N
sing
N
721
N
sing
N
722
N
sing
N
723
N
sing
N
724
N
sing
N
725
N
sing
N
726
N
sing
N
727
N
sing
N
728
N
sing
N
729
N
sing
N
730
N
sing
N
731
N
sing
N
732
N
sing
N
733
N
sing
N
734
N
sing
N
735
N
sing
N
736
N
sing
N
737
N
sing
N
738
N
sing
N
739
N
sing
N
740
N
sing
N
741
N
sing
N
742
N
sing
N
743
N
sing
N
744
N
sing
N
745
N
sing
N
746
N
sing
N
747
N
sing
N
748
N
sing
N
749
N
sing
N
750
N
sing
N
751
N
sing
N
752
N
sing
N
753
N
sing
N
754
N
sing
N
755
N
sing
N
756
N
sing
N
757
N
sing
N
758
N
sing
N
759
N
sing
N
760
N
sing
N
761
N
sing
N
762
N
sing
N
763
N
sing
N
764
N
sing
N
765
N
doub
N
766
N
sing
N
767
N
sing
N
768
N
sing
N
769
N
sing
N
770
N
sing
N
771
N
sing
N
772
N
sing
N
773
N
sing
N
774
N
sing
N
775
N
sing
N
776
N
sing
N
777
N
sing
N
778
N
sing
N
779
N
sing
N
780
N
sing
N
781
N
sing
N
782
N
sing
N
783
N
sing
N
784
N
sing
N
785
N
sing
N
786
N
doub
N
787
N
sing
N
788
N
sing
N
789
N
sing
N
790
N
sing
N
791
N
sing
N
792
N
sing
N
793
N
sing
N
794
N
sing
N
795
N
sing
N
796
N
sing
N
797
N
sing
N
798
N
sing
N
799
N
sing
N
800
N
sing
N
801
N
sing
N
802
N
sing
N
803
N
sing
N
804
N
sing
N
805
N
sing
N
806
N
sing
N
807
N
sing
N
808
N
sing
N
809
N
sing
N
810
N
sing
N
811
N
sing
N
812
N
sing
N
813
N
sing
N
814
N
sing
N
815
N
sing
N
816
N
sing
N
817
N
sing
N
818
N
sing
N
819
N
sing
N
820
N
sing
N
821
N
sing
N
822
N
sing
N
823
N
sing
N
824
N
sing
N
825
N
sing
N
826
N
sing
N
827
N
sing
N
828
N
sing
N
829
N
sing
N
830
N
sing
N
831
N
sing
N
832
N
sing
N
833
N
sing
N
834
N
doub
N
835
N
sing
N
836
N
sing
N
837
N
sing
N
838
N
sing
N
839
N
sing
N
840
N
sing
N
841
N
sing
N
842
N
sing
N
843
N
sing
N
844
N
sing
N
845
N
sing
N
846
N
sing
N
847
N
sing
N
848
N
sing
N
849
N
sing
N
850
N
sing
N
851
N
sing
N
852
N
sing
N
853
N
doub
N
854
N
sing
N
855
N
sing
N
856
N
sing
N
857
N
sing
Y
858
N
doub
Y
859
N
sing
Y
860
N
sing
N
861
N
sing
Y
862
N
doub
N
863
N
sing
Y
864
N
doub
N
865
N
sing
Y
866
N
sing
N
867
N
sing
N
868
N
sing
N
869
N
sing
N
870
N
sing
N
871
N
sing
N
872
N
sing
N
873
N
sing
N
874
N
sing
N
875
N
sing
N
876
N
doub
N
877
N
sing
N
878
N
sing
N
879
N
sing
N
880
N
sing
N
881
N
sing
N
882
N
sing
N
883
N
sing
N
884
N
sing
N
885
N
sing
N
886
N
sing
N
887
N
sing
N
888
N
sing
N
889
N
sing
N
890
N
sing
N
891
N
sing
N
892
N
sing
N
893
N
sing
N
894
N
sing
N
895
N
sing
N
896
N
sing
N
897
N
sing
N
898
N
sing
N
899
N
sing
N
900
N
doub
N
901
N
sing
N
902
N
sing
N
903
E
doub
N
904
N
sing
N
905
N
sing
N
906
N
sing
N
907
E
doub
N
908
N
sing
N
909
N
sing
N
910
N
sing
N
911
E
doub
N
912
N
sing
N
913
N
sing
N
914
N
sing
N
915
E
doub
N
916
N
sing
N
917
N
sing
N
918
N
sing
N
919
N
doub
N
920
N
sing
N
921
N
sing
N
922
N
sing
N
923
N
sing
N
924
N
sing
N
925
N
sing
N
926
N
sing
N
927
N
sing
N
928
N
sing
N
929
N
sing
N
930
N
sing
N
931
N
sing
N
932
N
sing
N
933
N
sing
N
934
N
sing
N
935
N
sing
N
936
N
sing
N
937
N
sing
N
938
N
sing
N
939
N
sing
N
940
N
sing
N
941
N
sing
N
942
N
doub
N
943
N
sing
N
944
N
sing
N
945
N
sing
N
946
N
sing
N
947
N
sing
N
948
N
sing
N
949
N
sing
N
950
N
sing
N
951
N
sing
N
952
N
sing
N
953
N
sing
N
954
N
sing
N
955
N
doub
N
956
N
sing
N
957
N
sing
N
958
N
sing
N
959
N
sing
N
960
N
sing
N
961
N
sing
N
962
N
sing
N
963
N
sing
N
964
N
sing
N
965
N
sing
N
966
N
sing
N
967
N
sing
N
968
N
sing
N
969
N
sing
N
970
N
sing
N
971
N
doub
N
972
N
sing
N
973
N
sing
N
974
N
sing
N
975
N
sing
Y
976
N
doub
Y
977
N
sing
Y
978
N
sing
N
979
N
sing
Y
980
N
doub
Y
981
N
sing
Y
982
N
sing
N
983
N
sing
Y
984
N
sing
Y
985
N
doub
N
986
N
sing
Y
987
N
doub
N
988
N
sing
Y
989
N
sing
N
990
N
sing
N
991
N
sing
N
992
N
sing
N
993
N
sing
N
994
N
sing
N
995
N
sing
N
996
N
sing
N
997
N
sing
N
998
N
sing
N
999
N
doub
N
1000
N
sing
N
1001
N
sing
N
1002
N
sing
N
1003
N
sing
Y
1004
N
doub
Y
1005
N
sing
Y
1006
N
sing
N
1007
N
sing
Y
1008
N
doub
N
1009
N
sing
Y
1010
N
doub
N
1011
N
sing
Y
1012
N
sing
N
1013
N
sing
N
1014
N
sing
N
1015
N
sing
N
1016
N
sing
N
1017
N
sing
N
1018
N
sing
N
1019
N
sing
N
1020
N
sing
N
1021
N
sing
N
1022
N
sing
N
1023
N
doub
N
1024
N
sing
N
1025
N
sing
N
1026
N
sing
N
1027
N
sing
N
1028
N
sing
N
1029
N
sing
N
1030
N
sing
N
1031
N
sing
N
1032
N
sing
N
1033
N
sing
N
1034
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
341
1023
10.1016/J.JMB.2004.06.080
15328615
Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
2004
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
D55
1251
10.1107/S090744499900503X
10393291
Specific Lipid-Protein Interactions in a Novel Honeycomb Lattice Structure of Bacteriorhodopsin
1999
10.2210/pdb1dze/pdb
pdb_00001dze
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
1998-11-18
RIGAKU IMAGE PLATE
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.70
1.0
BL44B2
SPring-8
0.70
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
5 LIPIDS AND 18 WATER MOLECULES
26814.412
BACTERIORHODOPSIN (M INTERMEDIATE)
1
nat
polymer
504.438
beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose
1
man
branched
284.436
RETINAL
1
syn
non-polymer
733.137
3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL
1
syn
non-polymer
653.157
2,3-DI-PHYTANYL-GLYCEROL
2
syn
non-polymer
885.179
2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE
1
syn
non-polymer
807.215
3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL
1
syn
non-polymer
18.015
water
18
nat
water
no
no
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATS
QAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYW
ARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKA
ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGEAEAPEPSA
GDGAAATS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HALOBACTERIUM SALINARIUM
sample
CELL MEMBRANE
2242
HALOBACTERIUM SALINARIUM
JW3
1
3.17
61.19
DATA WERE COLLECTED USING THE OSCILLATION METHOD
VAPOR DIFFUSION
5.20
THE CRYSTALLIZATION CONSISTS OF TWO STEPS. FIRST, A MIXTURE OF 5 MG/ML PURPLE MEMBRANE, 0.25% OTG, 1 M AMMONIUM SULFATE, 0.16 M NACL, 0.04 M SODIUM CITRATE (PH5.2) , 0.04% NAN3 WAS INCUBATED AND 15% TREHALOSE AT 305K FOR 5 DAYS. THIS RESULTED IN THE FORMATION OF SPHERICAL VESICLES WITH A DIAMETER OF 50 NM. AFTER SEDIMENTAL MATERIALS WERE REMOVED BY CENTRIFUGATION (4000G X 10 MIN), A SUSPENSION OF THE SPHERICAL VESICLES WAS COOLED TO 278K AND CONCENTRATED BY VAPOR DIFFUSION AGAINST A RESERVOIR SOLUTION CONTAINING 2.0 M AMMONIUM SULFATE 0.08M SODIUM CITRATE (PH 5.2) AND 30% TREHALOSE. INCUBATION FOR A COUPLE OF MONTHS YIELDED HEXAGONAL CRYSTALS.
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_conn
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Data collection
Derived calculations
Experimental preparation
Other
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2000-08-16
1
1
2011-05-07
1
2
2011-07-13
1
3
2019-03-06
2
0
2020-07-29
2
1
2023-12-06
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
GLC
400
n
B
GLC
1
A
MAN
410
n
B
MAN
2
A
GAL
420
n
B
GAL
3
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
DManpa
a-D-mannopyranose
a-D-Manp
Man
BACTERIORHODOPSIN/LIPID COMPLEX AT 1.55 A RESOLUTION (GROUND STATE WILD TYPE "BR")
BACTERIORHODOPSIN, HALOBACTERIUM HALOBIUM, ELECTRON DIFFRACTION
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN PURPLE MEMBRANE
X-RAY STRUCTURE OF THE BACTERIORHODOPSIN TRIMER/LIPID COMPLEX
RHODOPSIN (7-HELIX BUNDLE) COMPLEX WITH ALL-TRANS RETINAL (THEORETICAL MODEL)
BACTERIORHODOPSIN (7-HELIX BUNDLE) WITH 13-CIS RETINAL (THEORETICAL MODEL)
BACTERIORHODOPSIN (PROTEOLYTIC FRAGMENT 1 - 71, SOLUBILIZED IN SDS MICELLES) (NMR, 12 STRUCTURES)
BACTERIORHODOPSIN (PROTEOLYTIC FRAGMENT 1 - 71, SOLUBILIZED IN METHANOL-CHLOROFORM) (NMR, 12 STRUCTURES)
BACTERIORHODOPSIN (FRAGMENT 163-231) (NMR, 14 STRUCTURES)
X-RAY STRUCTURE OF BACTERIORHODOPSIN FROM MICROCRYSTALS GROWN IN LIPIDIC CUBIC PHASES
STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
STRUCTURE OF BACTERIORHODOPSIN AT 100 K
PDBE
Y
PDBE
2000-02-25
REL
oligosaccharide
DGalpb1-6DManpa1-2DGlcpa1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,3,2/[a2122h-1a_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3/a2-b1_b6-c1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Glcp]{[(2+1)][a-D-Manp]{[(6+1)][b-D-Galp]{}}}
2
PDB-CARE
LINUCS
C1
O2
MAN
GLC
2
1
2
O1
HO2
sing
C1
O6
GAL
MAN
3
2
2
O1
HO6
sing
n
n
n
RET
RETINAL
L1P
3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL
L2P
2,3-DI-PHYTANYL-GLYCEROL
L3P
2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE
L4P
3-[GLYCEROLYLPHOSPHONYL]-[1,2-DI-PHYTANYL]GLYCEROL
HOH
water
1QM8
PDB ENTRY 1QM8
PDB
experimental model
RET
250
3
RET
RET
250
A
L1P
260
4
L1P
L1P
260
A
L2P
270
5
L2P
L2P
270
A
L3P
280
6
L3P
L3P
280
A
L4P
290
7
L4P
L4P
290
A
L2P
300
5
L2P
L2P
300
A
HOH
2001
8
HOH
HOH
2001
A
HOH
2002
8
HOH
HOH
2002
A
HOH
2003
8
HOH
HOH
2003
A
HOH
2004
8
HOH
HOH
2004
A
HOH
2005
8
HOH
HOH
2005
A
HOH
2006
8
HOH
HOH
2006
A
HOH
2007
8
HOH
HOH
2007
A
HOH
2008
8
HOH
HOH
2008
A
HOH
2009
8
HOH
HOH
2009
A
HOH
2010
8
HOH
HOH
2010
A
HOH
2011
8
HOH
HOH
2011
A
HOH
2012
8
HOH
HOH
2012
A
HOH
2013
8
HOH
HOH
2013
A
HOH
2014
8
HOH
HOH
2014
A
HOH
2015
8
HOH
HOH
2015
A
HOH
2016
8
HOH
HOH
2016
A
HOH
2017
8
HOH
HOH
2017
A
HOH
2018
8
HOH
HOH
2018
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
GLY
6
n
6
GLY
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
TRP
10
n
10
TRP
10
A
ILE
11
n
11
ILE
11
A
TRP
12
n
12
TRP
12
A
LEU
13
n
13
LEU
13
A
ALA
14
n
14
ALA
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
LEU
25
n
25
LEU
25
A
TYR
26
n
26
TYR
26
A
PHE
27
n
27
PHE
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
PHE
42
n
42
PHE
42
A
TYR
43
n
43
TYR
43
A
ALA
44
n
44
ALA
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
PRO
50
n
50
PRO
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
PHE
54
n
54
PHE
54
A
THR
55
n
55
THR
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
SER
59
n
59
SER
59
A
MET
60
n
60
MET
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
MET
68
n
68
MET
68
A
VAL
69
n
69
VAL
69
A
PRO
70
n
70
PRO
70
A
PHE
71
n
71
PHE
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
GLN
75
n
75
GLN
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ARG
82
n
82
ARG
82
A
TYR
83
n
83
TYR
83
A
ALA
84
n
84
ALA
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
LEU
87
n
87
LEU
87
A
PHE
88
n
88
PHE
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
PRO
91
n
91
PRO
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASP
96
n
96
ASP
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASP
102
n
102
ASP
102
A
ALA
103
n
103
ALA
103
A
ASP
104
n
104
ASP
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
ILE
117
n
117
ILE
117
A
MET
118
n
118
MET
118
A
ILE
119
n
119
ILE
119
A
GLY
120
n
120
GLY
120
A
THR
121
n
121
THR
121
A
GLY
122
n
122
GLY
122
A
LEU
123
n
123
LEU
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
VAL
130
n
130
VAL
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
TRP
137
n
137
TRP
137
A
TRP
138
n
138
TRP
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
SER
141
n
141
SER
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
MET
145
n
145
MET
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
PHE
153
n
153
PHE
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
THR
157
n
157
THR
157
A
SER
158
n
158
SER
158
A
LYS
159
n
159
LYS
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
ARG
164
n
164
ARG
164
A
PRO
165
n
165
PRO
165
A
GLU
166
n
166
GLU
166
A
VAL
167
n
167
VAL
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
THR
170
n
170
THR
170
A
PHE
171
n
171
PHE
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
VAL
180
n
180
VAL
180
A
LEU
181
n
181
LEU
181
A
TRP
182
n
182
TRP
182
A
SER
183
n
183
SER
183
A
ALA
184
n
184
ALA
184
A
TYR
185
n
185
TYR
185
A
PRO
186
n
186
PRO
186
A
VAL
187
n
187
VAL
187
A
VAL
188
n
188
VAL
188
A
TRP
189
n
189
TRP
189
A
LEU
190
n
190
LEU
190
A
ILE
191
n
191
ILE
191
A
GLY
192
n
192
GLY
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
ILE
198
n
198
ILE
198
A
VAL
199
n
199
VAL
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
GLU
204
n
204
GLU
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
PHE
208
n
208
PHE
208
A
MET
209
n
209
MET
209
A
VAL
210
n
210
VAL
210
A
LEU
211
n
211
LEU
211
A
ASP
212
n
212
ASP
212
A
VAL
213
n
213
VAL
213
A
SER
214
n
214
SER
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
PHE
219
n
219
PHE
219
A
GLY
220
n
220
GLY
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
ARG
225
n
225
ARG
225
A
SER
226
n
226
SER
226
A
ARG
227
n
227
ARG
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
PHE
230
n
230
PHE
230
A
n
231
231
A
n
232
232
A
n
233
233
A
n
234
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
241
241
A
n
242
242
A
n
243
243
A
n
244
244
A
n
245
245
A
n
246
246
A
n
247
247
A
n
248
248
A
software_defined_assembly
PQS
3
trimeric
10290
-79.2
31220
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
51.2000000000
88.6810013475
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
102.4000000000
0.0000000000
0.0000000000
A
O
THR
67
A
O
THR
67
A
N
ILE
78
A
N
ILE
78
1
A
CG
ARG
227
A
CG
ARG
227
1
Y
1
A
CD
ARG
227
A
CD
ARG
227
1
Y
1
A
NE
ARG
227
A
NE
ARG
227
1
Y
1
A
CZ
ARG
227
A
CZ
ARG
227
1
Y
1
A
NH1
ARG
227
A
NH1
ARG
227
1
Y
1
A
NH2
ARG
227
A
NH2
ARG
227
1
Y
1
A
C51
L1P
260
D
C51
L1P
1
1
N
1
A
C52
L1P
260
D
C52
L1P
1
1
N
1
A
C53
L1P
260
D
C53
L1P
1
1
N
1
A
C54
L1P
260
D
C54
L1P
1
1
N
1
A
C55
L1P
260
D
C55
L1P
1
1
N
1
A
C56
L1P
260
D
C56
L1P
1
1
N
1
A
C57
L1P
260
D
C57
L1P
1
1
N
1
A
C58
L1P
260
D
C58
L1P
1
1
N
1
A
C59
L1P
260
D
C59
L1P
1
1
N
1
A
C60
L1P
260
D
C60
L1P
1
1
N
1
A
C58
L2P
270
E
C58
L2P
1
1
N
1
A
C59
L2P
270
E
C59
L2P
1
1
N
1
A
C60
L2P
270
E
C60
L2P
1
1
N
1
A
C22
L3P
280
F
C22
L3P
1
1
N
1
A
C23
L3P
280
F
C23
L3P
1
1
N
1
A
C24
L3P
280
F
C24
L3P
1
1
N
1
A
C25
L3P
280
F
C25
L3P
1
1
N
1
A
C26
L3P
280
F
C26
L3P
1
1
N
1
A
C27
L3P
280
F
C27
L3P
1
1
N
1
A
C28
L3P
280
F
C28
L3P
1
1
N
1
A
C29
L3P
280
F
C29
L3P
1
1
N
1
A
C30
L3P
280
F
C30
L3P
1
1
N
1
A
C51
L3P
280
F
C51
L3P
1
1
N
1
A
C52
L3P
280
F
C52
L3P
1
1
N
1
A
C53
L3P
280
F
C53
L3P
1
1
N
1
A
C54
L3P
280
F
C54
L3P
1
1
N
1
A
C55
L3P
280
F
C55
L3P
1
1
N
1
A
C56
L3P
280
F
C56
L3P
1
1
N
1
A
C57
L3P
280
F
C57
L3P
1
1
N
1
A
C58
L3P
280
F
C58
L3P
1
1
N
1
A
C59
L3P
280
F
C59
L3P
1
1
N
1
A
C60
L3P
280
F
C60
L3P
1
1
N
1
A
O6
L4P
290
G
O6
L4P
1
1
N
1
A
C48
L4P
290
G
C48
L4P
1
1
N
1
A
C49
L4P
290
G
C49
L4P
1
1
N
1
A
C50
L4P
290
G
C50
L4P
1
1
N
1
A
C51
L4P
290
G
C51
L4P
1
1
N
1
A
C52
L4P
290
G
C52
L4P
1
1
N
1
A
C53
L4P
290
G
C53
L4P
1
1
N
1
A
C54
L4P
290
G
C54
L4P
1
1
N
1
A
C55
L4P
290
G
C55
L4P
1
1
N
1
A
C56
L4P
290
G
C56
L4P
1
1
N
1
A
C57
L4P
290
G
C57
L4P
1
1
N
1
A
C58
L4P
290
G
C58
L4P
1
1
N
1
A
C59
L4P
290
G
C59
L4P
1
1
N
1
A
C60
L4P
290
G
C60
L4P
1
1
N
1
A
C18
L2P
300
H
C18
L2P
1
1
N
1
A
C19
L2P
300
H
C19
L2P
1
1
N
1
A
C20
L2P
300
H
C20
L2P
1
1
N
1
A
C21
L2P
300
H
C21
L2P
1
1
N
1
A
C22
L2P
300
H
C22
L2P
1
1
N
1
A
C23
L2P
300
H
C23
L2P
1
1
N
1
A
C24
L2P
300
H
C24
L2P
1
1
N
1
A
C25
L2P
300
H
C25
L2P
1
1
N
1
A
C26
L2P
300
H
C26
L2P
1
1
N
1
A
C27
L2P
300
H
C27
L2P
1
1
N
1
A
C28
L2P
300
H
C28
L2P
1
1
N
1
A
C29
L2P
300
H
C29
L2P
1
1
N
1
A
C30
L2P
300
H
C30
L2P
1
1
N
1
A
C58
L2P
300
H
C58
L2P
1
1
N
1
A
C59
L2P
300
H
C59
L2P
1
1
N
1
A
C60
L2P
300
H
C60
L2P
1
1
N
1
A
GLN
1
A
GLN
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ILE
4
A
ILE
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
GLY
231
A
GLY
231
1
Y
1
A
GLU
232
A
GLU
232
1
Y
1
A
ALA
233
A
ALA
233
1
Y
1
A
GLU
234
A
GLU
234
1
Y
1
A
ALA
235
A
ALA
235
1
Y
1
A
PRO
236
A
PRO
236
1
Y
1
A
GLU
237
A
GLU
237
1
Y
1
A
PRO
238
A
PRO
238
1
Y
1
A
SER
239
A
SER
239
1
Y
1
A
ALA
240
A
ALA
240
1
Y
1
A
GLY
241
A
GLY
241
1
Y
1
A
ASP
242
A
ASP
242
1
Y
1
A
GLY
243
A
GLY
243
1
Y
1
A
ALA
244
A
ALA
244
1
Y
1
A
ALA
245
A
ALA
245
1
Y
1
A
ALA
246
A
ALA
246
1
Y
1
A
THR
247
A
THR
247
1
Y
1
A
SER
248
A
SER
248
1
Y
1
A
ARG
7
-156.68
-58.06
1
A
SER
162
-84.28
31.94
1
A
ALA
196
-65.44
81.94
PARHCSDX.PRO
TOPHCSDX.PRO
RET_CIS.PAR
RET_CIS.TOP
DPG.PAR
DPG.TOP
GLC.PAR
GLC.TOP
36.0
-19.7
-9.8
0
-19.7
0
13.4
THE C-TERMINAL RESIDUES WERE NOT SEEN IN THE DENSITY MAPS
0.283
0.257
0.257
2.5
8
561
11017
5.0
90.8
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1QM8
2.5
8
18
2004
247
0
1739
0.006
1.22
20.1
1.22
0.437
0.371
2.61
41
756
8
5
2.500
50.000
1DZE
11480
0.000
0.06900
1
14.400
91.7
2.50
2.59
0.30400
1
55.2
refinement
X-PLOR
3.851
data reduction
MOSFLM
data scaling
SCALA
phasing
X-PLOR
Structure of the M Intermediate of Bacteriorhodopsin trapped at 100K
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
5
N
N
8
N
N
A
GLU
9
A
GLU
9
HELX_P
A
MET
32
A
MET
32
1
1
24
A
ASP
38
A
ASP
38
HELX_P
A
LEU
62
A
LEU
62
1
2
25
A
TRP
80
A
TRP
80
HELX_P
A
ASP
102
A
ASP
102
1
3
23
A
ASP
104
A
ASP
104
HELX_P
A
THR
128
A
THR
128
1
4
25
A
TYR
133
A
TYR
133
HELX_P
A
PHE
154
A
PHE
154
1
5
22
A
GLY
155
A
GLY
155
HELX_P
A
SER
162
A
SER
162
1
6
8
A
ARG
164
A
ARG
164
HELX_P
A
SER
183
A
SER
183
1
7
20
A
ALA
184
A
ALA
184
HELX_P
A
GLY
192
A
GLY
192
1
8
9
A
PRO
200
A
PRO
200
HELX_P
A
ARG
225
A
ARG
225
1
9
26
covale
1.343
one
A
LYS
216
A
NZ
LYS
216
1_555
A
RET
250
C
C15
RET
1_555
covale
1.430
one
A
L2P
270
E
O3
L2P
1_555
B
GLC
1
B
C1
GLC
1_555
covale
1.424
both
B
GLC
1
B
O2
GLC
1_555
B
MAN
2
B
C1
MAN
1_555
covale
1.445
both
B
MAN
2
B
O6
MAN
1_555
B
GAL
3
B
C1
GAL
1_555
BACTERIORHODOPSIN
BACTERIORHODOPSIN, PROTON PUMP, MEMBRANE PROTEIN, RETINAL PROTEIN, PHOTORECEPTOR, REACTION INTERMEDIATE, HALOBACTERIA, ION PUMP, HELIX, SLIDING
BACR_HALHA
UNP
1
P02945
14
261
1DZE
1
248
P02945
A
1
1
248
2
anti-parallel
A
LEU
66
A
LEU
66
A
PRO
70
A
PRO
70
A
GLN
75
A
GLN
75
A
TYR
79
A
TYR
79
177
P 6 2 2