1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bateman, A.
Bycroft, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
299
1113
10.1006/JMBI.2000.3778
10843862
The Structure of a Lysm Domain from E.Coli Membrane Bound Lytic Murein Transglycosylase D (Mltd)
2000
Can.J.Microbiol.
0008-4166
40
658
7922887
Cloning, Molecular Characterization, and Expression of the Genes Encoding the Lytic Functions of Lactococcal Bacteriophage-Phi-Lc3; a Dual Lysis System of Modular Design
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5442.219
Membrane-bound lytic murein transglycosylase D
4.2.2.-
LYSM DOMAIN
1
syn
polymer
no
no
DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK
DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
entity
entity_name_com
pdbx_database_status
pdbx_entity_src_syn
pdbx_nmr_software
struct_ref
struct_ref_seq
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Other
Source and taxonomy
Structure summary
1
0
2000-06-21
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-09-25
_entity.pdbx_description
_entity.pdbx_ec
_pdbx_database_status.status_code_mr
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_nmr_software.name
_struct_ref.db_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_seq_one_letter_code
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_accession
2003-11-05
SPRSDE
PDBE
Y
PDBE
2000-03-27
REL
REL
562
Escherichia coli
sample
1
48
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED MTLD LYSM DOMAIN
LEAST RESTRAINT VIOLATION
100
20
6.8
pH
310
K
SA FROM RANDOM COIL STARTING STRUCTURES
SA
BRUNGER
refinement
X-PLOR
structure solution
X-PLOR
500
Bruker
AMX
ASP
1
n
1
ASP
1
A
SER
2
n
2
SER
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
TYR
5
n
5
TYR
5
A
ARG
6
n
6
ARG
6
A
VAL
7
n
7
VAL
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
GLY
10
n
10
GLY
10
A
ASP
11
n
11
ASP
11
A
SER
12
n
12
SER
12
A
LEU
13
n
13
LEU
13
A
SER
14
n
14
SER
14
A
SER
15
n
15
SER
15
A
ILE
16
n
16
ILE
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
ARG
19
n
19
ARG
19
A
HIS
20
n
20
HIS
20
A
GLY
21
n
21
GLY
21
A
VAL
22
n
22
VAL
22
A
ASN
23
n
23
ASN
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
ASP
26
n
26
ASP
26
A
VAL
27
n
27
VAL
27
A
MET
28
n
28
MET
28
A
ARG
29
n
29
ARG
29
A
TRP
30
n
30
TRP
30
A
ASN
31
n
31
ASN
31
A
SER
32
n
32
SER
32
A
ASP
33
n
33
ASP
33
A
THR
34
n
34
THR
34
A
ALA
35
n
35
ALA
35
A
ASN
36
n
36
ASN
36
A
LEU
37
n
37
LEU
37
A
GLN
38
n
38
GLN
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ASP
41
n
41
ASP
41
A
LYS
42
n
42
LYS
42
A
LEU
43
n
43
LEU
43
A
THR
44
n
44
THR
44
A
LEU
45
n
45
LEU
45
A
PHE
46
n
46
PHE
46
A
VAL
47
n
47
VAL
47
A
LYS
48
n
48
LYS
48
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
5
A
O
TYR
5
A
N
LEU
43
A
N
LEU
43
1
A
ARG
6
0.294
SIDE CHAIN
1
A
ARG
8
0.301
SIDE CHAIN
1
A
ARG
19
0.308
SIDE CHAIN
1
A
ARG
29
0.296
SIDE CHAIN
2
A
ARG
6
0.291
SIDE CHAIN
2
A
ARG
8
0.293
SIDE CHAIN
2
A
ARG
19
0.129
SIDE CHAIN
2
A
ARG
29
0.259
SIDE CHAIN
3
A
ARG
6
0.307
SIDE CHAIN
3
A
ARG
8
0.317
SIDE CHAIN
3
A
ARG
19
0.135
SIDE CHAIN
3
A
ARG
29
0.262
SIDE CHAIN
4
A
ARG
6
0.318
SIDE CHAIN
4
A
ARG
8
0.235
SIDE CHAIN
4
A
ARG
19
0.264
SIDE CHAIN
4
A
ARG
29
0.312
SIDE CHAIN
5
A
ARG
6
0.317
SIDE CHAIN
5
A
ARG
8
0.273
SIDE CHAIN
5
A
ARG
19
0.237
SIDE CHAIN
5
A
ARG
29
0.276
SIDE CHAIN
6
A
ARG
6
0.315
SIDE CHAIN
6
A
ARG
8
0.315
SIDE CHAIN
6
A
ARG
19
0.248
SIDE CHAIN
6
A
ARG
29
0.310
SIDE CHAIN
7
A
ARG
6
0.264
SIDE CHAIN
7
A
ARG
8
0.220
SIDE CHAIN
7
A
ARG
19
0.215
SIDE CHAIN
7
A
ARG
29
0.229
SIDE CHAIN
8
A
ARG
6
0.249
SIDE CHAIN
8
A
ARG
8
0.309
SIDE CHAIN
8
A
ARG
19
0.284
SIDE CHAIN
8
A
ARG
29
0.239
SIDE CHAIN
9
A
ARG
6
0.300
SIDE CHAIN
9
A
ARG
8
0.277
SIDE CHAIN
9
A
ARG
19
0.251
SIDE CHAIN
9
A
ARG
29
0.289
SIDE CHAIN
10
A
ARG
6
0.287
SIDE CHAIN
10
A
ARG
8
0.303
SIDE CHAIN
10
A
ARG
19
0.297
SIDE CHAIN
10
A
ARG
29
0.227
SIDE CHAIN
11
A
ARG
6
0.221
SIDE CHAIN
11
A
ARG
8
0.186
SIDE CHAIN
11
A
ARG
19
0.210
SIDE CHAIN
11
A
ARG
29
0.316
SIDE CHAIN
12
A
ARG
6
0.259
SIDE CHAIN
12
A
ARG
8
0.306
SIDE CHAIN
12
A
ARG
19
0.230
SIDE CHAIN
12
A
ARG
29
0.241
SIDE CHAIN
13
A
ARG
6
0.230
SIDE CHAIN
13
A
ARG
8
0.317
SIDE CHAIN
13
A
ARG
19
0.108
SIDE CHAIN
13
A
ARG
29
0.300
SIDE CHAIN
14
A
ARG
6
0.275
SIDE CHAIN
14
A
ARG
8
0.310
SIDE CHAIN
14
A
ARG
19
0.304
SIDE CHAIN
14
A
ARG
29
0.212
SIDE CHAIN
15
A
ARG
6
0.218
SIDE CHAIN
15
A
ARG
8
0.242
SIDE CHAIN
15
A
ARG
19
0.279
SIDE CHAIN
15
A
ARG
29
0.307
SIDE CHAIN
16
A
ARG
6
0.307
SIDE CHAIN
16
A
ARG
8
0.288
SIDE CHAIN
16
A
ARG
19
0.280
SIDE CHAIN
16
A
ARG
29
0.214
SIDE CHAIN
17
A
ARG
6
0.148
SIDE CHAIN
17
A
ARG
8
0.312
SIDE CHAIN
17
A
ARG
19
0.281
SIDE CHAIN
17
A
ARG
29
0.293
SIDE CHAIN
18
A
ARG
6
0.254
SIDE CHAIN
18
A
ARG
8
0.110
SIDE CHAIN
18
A
ARG
19
0.118
SIDE CHAIN
18
A
ARG
29
0.316
SIDE CHAIN
19
A
ARG
6
0.316
SIDE CHAIN
19
A
ARG
8
0.222
SIDE CHAIN
19
A
ARG
19
0.259
SIDE CHAIN
19
A
ARG
29
0.281
SIDE CHAIN
20
A
ARG
6
0.203
SIDE CHAIN
20
A
ARG
8
0.304
SIDE CHAIN
20
A
ARG
19
0.289
SIDE CHAIN
20
A
ARG
29
0.228
SIDE CHAIN
1
A
PRO
39
-69.01
86.75
1
A
LEU
45
-117.02
55.32
1
A
VAL
47
-39.57
143.39
2
A
PRO
39
-68.84
84.53
2
A
LEU
45
-115.05
55.09
2
A
VAL
47
-39.43
141.57
3
A
SER
32
-89.68
-82.69
3
A
THR
34
-88.20
42.36
3
A
PRO
39
-68.45
86.30
3
A
LEU
45
-110.62
55.13
3
A
VAL
47
-39.64
144.65
4
A
THR
34
-86.97
32.61
4
A
PRO
39
-68.69
85.99
4
A
LEU
45
-109.02
55.53
4
A
VAL
47
-37.94
142.87
5
A
PRO
39
-69.08
85.04
5
A
VAL
47
-39.59
139.04
6
A
SER
32
-87.04
-81.92
6
A
THR
34
-89.82
43.78
6
A
PRO
39
-69.44
86.19
6
A
VAL
47
-39.40
140.06
7
A
SER
32
-93.13
-82.83
7
A
THR
34
-84.37
48.39
7
A
PRO
39
-68.91
86.83
7
A
LEU
45
-110.78
55.20
7
A
VAL
47
-38.94
142.88
8
A
THR
34
-89.13
32.48
8
A
PRO
39
-69.10
84.73
8
A
VAL
47
-37.21
138.15
9
A
THR
34
-86.99
41.08
9
A
PRO
39
-69.32
84.29
9
A
VAL
47
-38.24
143.12
10
A
SER
32
-92.31
-82.12
10
A
THR
34
-87.12
41.64
10
A
PRO
39
-69.87
86.39
10
A
LEU
45
-117.73
54.52
10
A
VAL
47
-38.39
137.30
11
A
SER
32
-91.00
-81.32
11
A
THR
34
-86.22
41.08
11
A
PRO
39
-68.98
85.59
11
A
LEU
45
-115.02
54.00
11
A
VAL
47
-38.53
137.46
12
A
PRO
39
-69.29
85.82
13
A
SER
32
-92.45
-78.72
13
A
THR
34
-84.84
47.06
13
A
PRO
39
-69.86
85.90
13
A
LEU
45
-118.38
54.53
13
A
VAL
47
-39.00
137.49
14
A
SER
32
-94.42
-82.53
14
A
THR
34
-84.29
47.57
14
A
PRO
39
-69.08
85.24
14
A
LEU
45
-116.70
54.59
15
A
SER
32
-92.68
-83.03
15
A
THR
34
-83.39
48.05
15
A
PRO
39
-68.86
87.40
15
A
LEU
45
-113.91
56.43
16
A
SER
32
-88.39
-81.95
16
A
THR
34
-86.17
43.36
16
A
PRO
39
-67.82
86.64
16
A
LEU
45
-111.67
54.78
17
A
SER
32
-97.29
-80.98
17
A
ASP
33
-69.58
94.14
17
A
THR
34
-87.28
49.43
17
A
PRO
39
-69.05
84.52
17
A
LEU
45
-117.20
55.49
17
A
VAL
47
-39.36
140.28
18
A
PRO
39
-69.06
85.55
18
A
VAL
47
-38.97
138.95
19
A
SER
32
-98.69
-78.31
19
A
ASP
33
-68.08
92.52
19
A
THR
34
-83.57
49.43
19
A
PRO
39
-69.28
85.44
19
A
LEU
45
-117.65
54.37
19
A
VAL
47
-39.17
138.80
20
A
PRO
39
-69.22
86.61
20
A
VAL
47
-37.61
141.09
MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE D
LYSM Domain from E.coli MLTD
1
N
N
A
SER
12
A
SER
12
HELX_P
A
HIS
20
A
HIS
20
1
1
9
A
ASN
23
A
ASN
23
HELX_P
A
ASN
31
A
ASN
31
1
2
9
A
ASP
33
A
ASP
33
HELX_P
A
LEU
37
A
LEU
37
5
3
5
HYDROLASE
CELL WALL, HYDROLASE, GLYCOSIDASE, LIPOPROTEIN, OUTER MEMBRANE, MULTIGENE FAMILY
A0A2Z2J5F1_ECOLX
UNP
1
352
A0A2Z2J5F1
DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK
352
399
1E0G
1
48
A0A2Z2J5F1
A
1
1
48
2
anti-parallel
A
THR
4
A
THR
4
A
VAL
7
A
VAL
7
A
ASP
41
A
ASP
41
A
THR
44
A
THR
44
1
P 1