0.007041
0.004065
0.000000
0.000000
0.008130
0.000000
0.000000
0.000000
0.005701
0.00000
0.00000
0.00000
Desogus, G.
Todone, F.
Brick, P.
Onesti, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
142.020
142.020
175.390
C11 H18 N5 O12 P3
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
C
N
9
R
P
N
10
N
O
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
C
N
15
R
C
N
16
N
O
N
17
S
C
N
18
N
O
N
19
R
C
N
20
N
O
N
21
R
C
Y
22
N
N
Y
23
N
C
Y
24
N
N
Y
25
N
C
Y
26
N
C
N
27
N
N
Y
28
N
N
Y
29
N
C
Y
30
N
N
Y
31
N
C
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
O
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
Y
205
N
C
Y
206
N
N
Y
207
N
C
Y
208
N
C
Y
209
N
N
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
S
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
N
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
S
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
MG
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
R
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
Y
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
39
8418
10.1021/BI0006722
10913247
Active Site of Lysyl-tRNA Synthetase: Structural Studies of the Adenylation Reaction
2000
10.2210/pdb1e22/pdb
pdb_00001e22
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
IMAGE PLATE
1995-06-15
MARRESEARCH
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.32
1.0
5.2R
ELETTRA
1.32
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
57767.191
LYSYL-TRNA SYNTHETASE
6.1.1.6
1
man
polymer
147.195
LYSINE
1
syn
non-polymer
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
1
syn
non-polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
92.094
GLYCEROL
6
syn
non-polymer
18.015
water
306
nat
water
no
no
SEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG
KASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQ
DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE
LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFG
KPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLA
RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDR
MIMLFTNSHTIRDVILFPAMRPQK
SEQETRGANEAIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG
KASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQ
DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE
LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFG
KPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLA
RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDR
MIMLFTNSHTIRDVILFPAMRPQK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
CYTOPLASM
LYSU
83333
ESCHERICHIA COLI
LYSU
562
ESCHERICHIA COLI
TG2
PXLYS5
1
4.8
74
STRUCTURE WAS SOLVED BY DIFFERENCE FOURIER METHODS USING PHASES FROM 1E1O
6.80
THE PROTEIN WAS CONCENTRATED TO 12 MG/ML IN THE PRESENCE OF 5 MM LYSINE AND WAS CRYSTALLISED FROM 0.1 M PIPES PH 6.8, 0.5 M LICL, 20% PEG 4K, 17% GLYCEROL; THEN, A SMALL AMOUNT OF A SOLUTION CONTAINING AMP-PCP AND MGCL2 WAS ADDED TO THE DROP TO GET A FINAL CONCENTRATION OF ABOUT 5 MM.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Atomic model
Derived calculations
Non-polymer description
Other
Refinement description
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2000-07-28
1
1
2011-08-24
1
2
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
LYSYL-TRNA SYNTHETASE (LYSU) (E.C.6.1.1.6) COMPLEXED WITH LYSINE
LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM, COMPLEXED WITH LYSINE
LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH THE LYSYL_ADENYLATE INTERMEDIATE
LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH LYSINE AND ATP AND MN2+
PDBE
Y
PDBE
2000-05-15
REL
REL
LYS
LYSINE
ACP
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
MG
MAGNESIUM ION
GOL
GLYCEROL
HOH
water
WHEN THE NON-HYDROLYSABLE ATP ANALOGUE AMP-PCP IS USED
INSTEAD OF ATP THE FIRST STEP OF THE REACTION DOES NOT
OCCUR AND THE RESULTING MODEL SHOWS THE CONFORMATION OF THE
ATP SUBSTRATE BEFORE THE REACTION.
1E1O
PDB
experimental model
LYS
510
2
LYS
LYS
510
A
ACP
512
3
ACP
ACP
512
A
MG
515
4
MG
MG
515
A
MG
516
4
MG
MG
516
A
MG
517
4
MG
MG
517
A
GOL
520
5
GOL
GOL
520
A
GOL
521
5
GOL
GOL
521
A
GOL
522
5
GOL
GOL
522
A
GOL
523
5
GOL
GOL
523
A
GOL
524
5
GOL
GOL
524
A
GOL
525
5
GOL
GOL
525
A
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2041
6
HOH
HOH
2041
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2044
6
HOH
HOH
2044
A
HOH
2045
6
HOH
HOH
2045
A
HOH
2046
6
HOH
HOH
2046
A
HOH
2047
6
HOH
HOH
2047
A
HOH
2048
6
HOH
HOH
2048
A
HOH
2049
6
HOH
HOH
2049
A
HOH
2050
6
HOH
HOH
2050
A
HOH
2051
6
HOH
HOH
2051
A
HOH
2052
6
HOH
HOH
2052
A
HOH
2053
6
HOH
HOH
2053
A
HOH
2054
6
HOH
HOH
2054
A
HOH
2055
6
HOH
HOH
2055
A
HOH
2056
6
HOH
HOH
2056
A
HOH
2057
6
HOH
HOH
2057
A
HOH
2058
6
HOH
HOH
2058
A
HOH
2059
6
HOH
HOH
2059
A
HOH
2060
6
HOH
HOH
2060
A
HOH
2061
6
HOH
HOH
2061
A
HOH
2062
6
HOH
HOH
2062
A
HOH
2063
6
HOH
HOH
2063
A
HOH
2064
6
HOH
HOH
2064
A
HOH
2065
6
HOH
HOH
2065
A
HOH
2066
6
HOH
HOH
2066
A
HOH
2067
6
HOH
HOH
2067
A
HOH
2068
6
HOH
HOH
2068
A
HOH
2069
6
HOH
HOH
2069
A
HOH
2070
6
HOH
HOH
2070
A
HOH
2071
6
HOH
HOH
2071
A
HOH
2072
6
HOH
HOH
2072
A
HOH
2073
6
HOH
HOH
2073
A
HOH
2074
6
HOH
HOH
2074
A
HOH
2075
6
HOH
HOH
2075
A
HOH
2076
6
HOH
HOH
2076
A
HOH
2077
6
HOH
HOH
2077
A
HOH
2078
6
HOH
HOH
2078
A
HOH
2079
6
HOH
HOH
2079
A
HOH
2080
6
HOH
HOH
2080
A
HOH
2081
6
HOH
HOH
2081
A
HOH
2082
6
HOH
HOH
2082
A
HOH
2083
6
HOH
HOH
2083
A
HOH
2084
6
HOH
HOH
2084
A
HOH
2085
6
HOH
HOH
2085
A
HOH
2086
6
HOH
HOH
2086
A
HOH
2087
6
HOH
HOH
2087
A
HOH
2088
6
HOH
HOH
2088
A
HOH
2089
6
HOH
HOH
2089
A
HOH
2090
6
HOH
HOH
2090
A
HOH
2091
6
HOH
HOH
2091
A
HOH
2092
6
HOH
HOH
2092
A
HOH
2093
6
HOH
HOH
2093
A
HOH
2094
6
HOH
HOH
2094
A
HOH
2095
6
HOH
HOH
2095
A
HOH
2096
6
HOH
HOH
2096
A
HOH
2097
6
HOH
HOH
2097
A
HOH
2098
6
HOH
HOH
2098
A
HOH
2099
6
HOH
HOH
2099
A
HOH
2100
6
HOH
HOH
2100
A
HOH
2101
6
HOH
HOH
2101
A
HOH
2102
6
HOH
HOH
2102
A
HOH
2103
6
HOH
HOH
2103
A
HOH
2104
6
HOH
HOH
2104
A
HOH
2105
6
HOH
HOH
2105
A
HOH
2106
6
HOH
HOH
2106
A
HOH
2107
6
HOH
HOH
2107
A
HOH
2108
6
HOH
HOH
2108
A
HOH
2109
6
HOH
HOH
2109
A
HOH
2110
6
HOH
HOH
2110
A
HOH
2111
6
HOH
HOH
2111
A
HOH
2112
6
HOH
HOH
2112
A
HOH
2113
6
HOH
HOH
2113
A
HOH
2114
6
HOH
HOH
2114
A
HOH
2115
6
HOH
HOH
2115
A
HOH
2116
6
HOH
HOH
2116
A
HOH
2117
6
HOH
HOH
2117
A
HOH
2118
6
HOH
HOH
2118
A
HOH
2119
6
HOH
HOH
2119
A
HOH
2120
6
HOH
HOH
2120
A
HOH
2121
6
HOH
HOH
2121
A
HOH
2122
6
HOH
HOH
2122
A
HOH
2123
6
HOH
HOH
2123
A
HOH
2124
6
HOH
HOH
2124
A
HOH
2125
6
HOH
HOH
2125
A
HOH
2126
6
HOH
HOH
2126
A
HOH
2127
6
HOH
HOH
2127
A
HOH
2128
6
HOH
HOH
2128
A
HOH
2129
6
HOH
HOH
2129
A
HOH
2130
6
HOH
HOH
2130
A
HOH
2131
6
HOH
HOH
2131
A
HOH
2132
6
HOH
HOH
2132
A
HOH
2133
6
HOH
HOH
2133
A
HOH
2134
6
HOH
HOH
2134
A
HOH
2135
6
HOH
HOH
2135
A
HOH
2136
6
HOH
HOH
2136
A
HOH
2137
6
HOH
HOH
2137
A
HOH
2138
6
HOH
HOH
2138
A
HOH
2139
6
HOH
HOH
2139
A
HOH
2140
6
HOH
HOH
2140
A
HOH
2141
6
HOH
HOH
2141
A
HOH
2142
6
HOH
HOH
2142
A
HOH
2143
6
HOH
HOH
2143
A
HOH
2144
6
HOH
HOH
2144
A
HOH
2145
6
HOH
HOH
2145
A
HOH
2146
6
HOH
HOH
2146
A
HOH
2147
6
HOH
HOH
2147
A
HOH
2148
6
HOH
HOH
2148
A
HOH
2149
6
HOH
HOH
2149
A
HOH
2150
6
HOH
HOH
2150
A
HOH
2151
6
HOH
HOH
2151
A
HOH
2152
6
HOH
HOH
2152
A
HOH
2153
6
HOH
HOH
2153
A
HOH
2154
6
HOH
HOH
2154
A
HOH
2155
6
HOH
HOH
2155
A
HOH
2156
6
HOH
HOH
2156
A
HOH
2157
6
HOH
HOH
2157
A
HOH
2158
6
HOH
HOH
2158
A
HOH
2159
6
HOH
HOH
2159
A
HOH
2160
6
HOH
HOH
2160
A
HOH
2161
6
HOH
HOH
2161
A
HOH
2162
6
HOH
HOH
2162
A
HOH
2163
6
HOH
HOH
2163
A
HOH
2164
6
HOH
HOH
2164
A
HOH
2165
6
HOH
HOH
2165
A
HOH
2166
6
HOH
HOH
2166
A
HOH
2167
6
HOH
HOH
2167
A
HOH
2168
6
HOH
HOH
2168
A
HOH
2169
6
HOH
HOH
2169
A
HOH
2170
6
HOH
HOH
2170
A
HOH
2171
6
HOH
HOH
2171
A
HOH
2172
6
HOH
HOH
2172
A
HOH
2173
6
HOH
HOH
2173
A
HOH
2174
6
HOH
HOH
2174
A
HOH
2175
6
HOH
HOH
2175
A
HOH
2176
6
HOH
HOH
2176
A
HOH
2177
6
HOH
HOH
2177
A
HOH
2178
6
HOH
HOH
2178
A
HOH
2179
6
HOH
HOH
2179
A
HOH
2180
6
HOH
HOH
2180
A
HOH
2181
6
HOH
HOH
2181
A
HOH
2182
6
HOH
HOH
2182
A
HOH
2183
6
HOH
HOH
2183
A
HOH
2184
6
HOH
HOH
2184
A
HOH
2185
6
HOH
HOH
2185
A
HOH
2186
6
HOH
HOH
2186
A
HOH
2187
6
HOH
HOH
2187
A
HOH
2188
6
HOH
HOH
2188
A
HOH
2189
6
HOH
HOH
2189
A
HOH
2190
6
HOH
HOH
2190
A
HOH
2191
6
HOH
HOH
2191
A
HOH
2192
6
HOH
HOH
2192
A
HOH
2193
6
HOH
HOH
2193
A
HOH
2194
6
HOH
HOH
2194
A
HOH
2195
6
HOH
HOH
2195
A
HOH
2196
6
HOH
HOH
2196
A
HOH
2197
6
HOH
HOH
2197
A
HOH
2198
6
HOH
HOH
2198
A
HOH
2199
6
HOH
HOH
2199
A
HOH
2200
6
HOH
HOH
2200
A
HOH
2201
6
HOH
HOH
2201
A
HOH
2202
6
HOH
HOH
2202
A
HOH
2203
6
HOH
HOH
2203
A
HOH
2204
6
HOH
HOH
2204
A
HOH
2205
6
HOH
HOH
2205
A
HOH
2206
6
HOH
HOH
2206
A
HOH
2207
6
HOH
HOH
2207
A
HOH
2208
6
HOH
HOH
2208
A
HOH
2209
6
HOH
HOH
2209
A
HOH
2210
6
HOH
HOH
2210
A
HOH
2211
6
HOH
HOH
2211
A
HOH
2212
6
HOH
HOH
2212
A
HOH
2213
6
HOH
HOH
2213
A
HOH
2214
6
HOH
HOH
2214
A
HOH
2215
6
HOH
HOH
2215
A
HOH
2216
6
HOH
HOH
2216
A
HOH
2217
6
HOH
HOH
2217
A
HOH
2218
6
HOH
HOH
2218
A
HOH
2219
6
HOH
HOH
2219
A
HOH
2220
6
HOH
HOH
2220
A
HOH
2221
6
HOH
HOH
2221
A
HOH
2222
6
HOH
HOH
2222
A
HOH
2223
6
HOH
HOH
2223
A
HOH
2224
6
HOH
HOH
2224
A
HOH
2225
6
HOH
HOH
2225
A
HOH
2226
6
HOH
HOH
2226
A
HOH
2227
6
HOH
HOH
2227
A
HOH
2228
6
HOH
HOH
2228
A
HOH
2229
6
HOH
HOH
2229
A
HOH
2230
6
HOH
HOH
2230
A
HOH
2231
6
HOH
HOH
2231
A
HOH
2232
6
HOH
HOH
2232
A
HOH
2233
6
HOH
HOH
2233
A
HOH
2234
6
HOH
HOH
2234
A
HOH
2235
6
HOH
HOH
2235
A
HOH
2236
6
HOH
HOH
2236
A
HOH
2237
6
HOH
HOH
2237
A
HOH
2238
6
HOH
HOH
2238
A
HOH
2239
6
HOH
HOH
2239
A
HOH
2240
6
HOH
HOH
2240
A
HOH
2241
6
HOH
HOH
2241
A
HOH
2242
6
HOH
HOH
2242
A
HOH
2243
6
HOH
HOH
2243
A
HOH
2244
6
HOH
HOH
2244
A
HOH
2245
6
HOH
HOH
2245
A
HOH
2246
6
HOH
HOH
2246
A
HOH
2247
6
HOH
HOH
2247
A
HOH
2248
6
HOH
HOH
2248
A
HOH
2249
6
HOH
HOH
2249
A
HOH
2250
6
HOH
HOH
2250
A
HOH
2251
6
HOH
HOH
2251
A
HOH
2252
6
HOH
HOH
2252
A
HOH
2253
6
HOH
HOH
2253
A
HOH
2254
6
HOH
HOH
2254
A
HOH
2255
6
HOH
HOH
2255
A
HOH
2256
6
HOH
HOH
2256
A
HOH
2257
6
HOH
HOH
2257
A
HOH
2258
6
HOH
HOH
2258
A
HOH
2259
6
HOH
HOH
2259
A
HOH
2260
6
HOH
HOH
2260
A
HOH
2261
6
HOH
HOH
2261
A
HOH
2262
6
HOH
HOH
2262
A
HOH
2263
6
HOH
HOH
2263
A
HOH
2264
6
HOH
HOH
2264
A
HOH
2265
6
HOH
HOH
2265
A
HOH
2266
6
HOH
HOH
2266
A
HOH
2267
6
HOH
HOH
2267
A
HOH
2268
6
HOH
HOH
2268
A
HOH
2269
6
HOH
HOH
2269
A
HOH
2270
6
HOH
HOH
2270
A
HOH
2271
6
HOH
HOH
2271
A
HOH
2272
6
HOH
HOH
2272
A
HOH
2273
6
HOH
HOH
2273
A
HOH
2274
6
HOH
HOH
2274
A
HOH
2275
6
HOH
HOH
2275
A
HOH
2276
6
HOH
HOH
2276
A
HOH
2277
6
HOH
HOH
2277
A
HOH
2278
6
HOH
HOH
2278
A
HOH
2279
6
HOH
HOH
2279
A
HOH
2280
6
HOH
HOH
2280
A
HOH
2281
6
HOH
HOH
2281
A
HOH
2282
6
HOH
HOH
2282
A
HOH
2283
6
HOH
HOH
2283
A
HOH
2284
6
HOH
HOH
2284
A
HOH
2285
6
HOH
HOH
2285
A
HOH
2286
6
HOH
HOH
2286
A
HOH
2287
6
HOH
HOH
2287
A
HOH
2288
6
HOH
HOH
2288
A
HOH
2289
6
HOH
HOH
2289
A
HOH
2290
6
HOH
HOH
2290
A
HOH
2291
6
HOH
HOH
2291
A
HOH
2292
6
HOH
HOH
2292
A
HOH
2293
6
HOH
HOH
2293
A
HOH
2294
6
HOH
HOH
2294
A
HOH
2295
6
HOH
HOH
2295
A
HOH
2296
6
HOH
HOH
2296
A
HOH
2297
6
HOH
HOH
2297
A
HOH
2298
6
HOH
HOH
2298
A
HOH
2299
6
HOH
HOH
2299
A
HOH
2300
6
HOH
HOH
2300
A
HOH
2301
6
HOH
HOH
2301
A
HOH
2302
6
HOH
HOH
2302
A
HOH
2303
6
HOH
HOH
2303
A
HOH
2304
6
HOH
HOH
2304
A
HOH
2305
6
HOH
HOH
2305
A
HOH
2306
6
HOH
HOH
2306
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
ALA
11
n
11
ALA
11
A
ILE
12
n
12
ILE
12
A
ASP
13
n
13
ASP
13
A
PHE
14
n
14
PHE
14
A
ASN
15
n
15
ASN
15
A
ASP
16
n
16
ASP
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
ARG
19
n
19
ARG
19
A
ASN
20
n
20
ASN
20
A
ARG
21
n
21
ARG
21
A
ARG
22
n
22
ARG
22
A
GLU
23
n
23
GLU
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
GLN
30
n
30
GLN
30
A
GLN
31
n
31
GLN
31
A
GLY
32
n
32
GLY
32
A
VAL
33
n
33
VAL
33
A
ALA
34
n
34
ALA
34
A
PHE
35
n
35
PHE
35
A
PRO
36
n
36
PRO
36
A
ASN
37
n
37
ASN
37
A
ASP
38
n
38
ASP
38
A
PHE
39
n
39
PHE
39
A
ARG
40
n
40
ARG
40
A
ARG
41
n
41
ARG
41
A
ASP
42
n
42
ASP
42
A
HIS
43
n
43
HIS
43
A
THR
44
n
44
THR
44
A
SER
45
n
45
SER
45
A
ASP
46
n
46
ASP
46
A
GLN
47
n
47
GLN
47
A
LEU
48
n
48
LEU
48
A
HIS
49
n
49
HIS
49
A
GLU
50
n
50
GLU
50
A
GLU
51
n
51
GLU
51
A
PHE
52
n
52
PHE
52
A
ASP
53
n
53
ASP
53
A
ALA
54
n
54
ALA
54
A
LYS
55
n
55
LYS
55
A
ASP
56
n
56
ASP
56
A
ASN
57
n
57
ASN
57
A
GLN
58
n
58
GLN
58
A
GLU
59
n
59
GLU
59
A
LEU
60
n
60
LEU
60
A
GLU
61
n
61
GLU
61
A
SER
62
n
62
SER
62
A
LEU
63
n
63
LEU
63
A
ASN
64
n
64
ASN
64
A
ILE
65
n
65
ILE
65
A
GLU
66
n
66
GLU
66
A
VAL
67
n
67
VAL
67
A
SER
68
n
68
SER
68
A
VAL
69
n
69
VAL
69
A
ALA
70
n
70
ALA
70
A
GLY
71
n
71
GLY
71
A
ARG
72
n
72
ARG
72
A
MET
73
n
73
MET
73
A
MET
74
n
74
MET
74
A
THR
75
n
75
THR
75
A
ARG
76
n
76
ARG
76
A
ARG
77
n
77
ARG
77
A
ILE
78
n
78
ILE
78
A
MET
79
n
79
MET
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
ALA
82
n
82
ALA
82
A
SER
83
n
83
SER
83
A
PHE
84
n
84
PHE
84
A
VAL
85
n
85
VAL
85
A
THR
86
n
86
THR
86
A
LEU
87
n
87
LEU
87
A
GLN
88
n
88
GLN
88
A
ASP
89
n
89
ASP
89
A
VAL
90
n
90
VAL
90
A
GLY
91
n
91
GLY
91
A
GLY
92
n
92
GLY
92
A
ARG
93
n
93
ARG
93
A
ILE
94
n
94
ILE
94
A
GLN
95
n
95
GLN
95
A
LEU
96
n
96
LEU
96
A
TYR
97
n
97
TYR
97
A
VAL
98
n
98
VAL
98
A
ALA
99
n
99
ALA
99
A
ARG
100
n
100
ARG
100
A
ASP
101
n
101
ASP
101
A
SER
102
n
102
SER
102
A
LEU
103
n
103
LEU
103
A
PRO
104
n
104
PRO
104
A
GLU
105
n
105
GLU
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
TYR
108
n
108
TYR
108
A
ASN
109
n
109
ASN
109
A
ASP
110
n
110
ASP
110
A
GLN
111
n
111
GLN
111
A
PHE
112
n
112
PHE
112
A
LYS
113
n
113
LYS
113
A
LYS
114
n
114
LYS
114
A
TRP
115
n
115
TRP
115
A
ASP
116
n
116
ASP
116
A
LEU
117
n
117
LEU
117
A
GLY
118
n
118
GLY
118
A
ASP
119
n
119
ASP
119
A
ILE
120
n
120
ILE
120
A
ILE
121
n
121
ILE
121
A
GLY
122
n
122
GLY
122
A
ALA
123
n
123
ALA
123
A
ARG
124
n
124
ARG
124
A
GLY
125
n
125
GLY
125
A
THR
126
n
126
THR
126
A
LEU
127
n
127
LEU
127
A
PHE
128
n
128
PHE
128
A
LYS
129
n
129
LYS
129
A
THR
130
n
130
THR
130
A
GLN
131
n
131
GLN
131
A
THR
132
n
132
THR
132
A
GLY
133
n
133
GLY
133
A
GLU
134
n
134
GLU
134
A
LEU
135
n
135
LEU
135
A
SER
136
n
136
SER
136
A
ILE
137
n
137
ILE
137
A
HIS
138
n
138
HIS
138
A
CYS
139
n
139
CYS
139
A
THR
140
n
140
THR
140
A
GLU
141
n
141
GLU
141
A
LEU
142
n
142
LEU
142
A
ARG
143
n
143
ARG
143
A
LEU
144
n
144
LEU
144
A
LEU
145
n
145
LEU
145
A
THR
146
n
146
THR
146
A
LYS
147
n
147
LYS
147
A
ALA
148
n
148
ALA
148
A
LEU
149
n
149
LEU
149
A
ARG
150
n
150
ARG
150
A
PRO
151
n
151
PRO
151
A
LEU
152
n
152
LEU
152
A
PRO
153
n
153
PRO
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
ASP
161
n
161
ASP
161
A
GLN
162
n
162
GLN
162
A
GLU
163
n
163
GLU
163
A
VAL
164
n
164
VAL
164
A
ARG
165
n
165
ARG
165
A
TYR
166
n
166
TYR
166
A
ARG
167
n
167
ARG
167
A
GLN
168
n
168
GLN
168
A
ARG
169
n
169
ARG
169
A
TYR
170
n
170
TYR
170
A
LEU
171
n
171
LEU
171
A
ASP
172
n
172
ASP
172
A
LEU
173
n
173
LEU
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
ASN
176
n
176
ASN
176
A
ASP
177
n
177
ASP
177
A
LYS
178
n
178
LYS
178
A
SER
179
n
179
SER
179
A
ARG
180
n
180
ARG
180
A
GLN
181
n
181
GLN
181
A
THR
182
n
182
THR
182
A
PHE
183
n
183
PHE
183
A
VAL
184
n
184
VAL
184
A
VAL
185
n
185
VAL
185
A
ARG
186
n
186
ARG
186
A
SER
187
n
187
SER
187
A
LYS
188
n
188
LYS
188
A
ILE
189
n
189
ILE
189
A
LEU
190
n
190
LEU
190
A
ALA
191
n
191
ALA
191
A
ALA
192
n
192
ALA
192
A
ILE
193
n
193
ILE
193
A
ARG
194
n
194
ARG
194
A
GLN
195
n
195
GLN
195
A
PHE
196
n
196
PHE
196
A
MET
197
n
197
MET
197
A
VAL
198
n
198
VAL
198
A
ALA
199
n
199
ALA
199
A
ARG
200
n
200
ARG
200
A
GLY
201
n
201
GLY
201
A
PHE
202
n
202
PHE
202
A
MET
203
n
203
MET
203
A
GLU
204
n
204
GLU
204
A
VAL
205
n
205
VAL
205
A
GLU
206
n
206
GLU
206
A
THR
207
n
207
THR
207
A
PRO
208
n
208
PRO
208
A
MET
209
n
209
MET
209
A
MET
210
n
210
MET
210
A
GLN
211
n
211
GLN
211
A
VAL
212
n
212
VAL
212
A
ILE
213
n
213
ILE
213
A
PRO
214
n
214
PRO
214
A
GLY
215
n
215
GLY
215
A
GLY
216
n
216
GLY
216
A
ALA
217
n
217
ALA
217
A
SER
218
n
218
SER
218
A
ALA
219
n
219
ALA
219
A
ARG
220
n
220
ARG
220
A
PRO
221
n
221
PRO
221
A
PHE
222
n
222
PHE
222
A
ILE
223
n
223
ILE
223
A
THR
224
n
224
THR
224
A
HIS
225
n
225
HIS
225
A
HIS
226
n
226
HIS
226
A
ASN
227
n
227
ASN
227
A
ALA
228
n
228
ALA
228
A
LEU
229
n
229
LEU
229
A
ASP
230
n
230
ASP
230
A
LEU
231
n
231
LEU
231
A
ASP
232
n
232
ASP
232
A
MET
233
n
233
MET
233
A
TYR
234
n
234
TYR
234
A
LEU
235
n
235
LEU
235
A
ARG
236
n
236
ARG
236
A
ILE
237
n
237
ILE
237
A
ALA
238
n
238
ALA
238
A
PRO
239
n
239
PRO
239
A
GLU
240
n
240
GLU
240
A
LEU
241
n
241
LEU
241
A
TYR
242
n
242
TYR
242
A
LEU
243
n
243
LEU
243
A
LYS
244
n
244
LYS
244
A
ARG
245
n
245
ARG
245
A
LEU
246
n
246
LEU
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
GLY
249
n
249
GLY
249
A
GLY
250
n
250
GLY
250
A
PHE
251
n
251
PHE
251
A
GLU
252
n
252
GLU
252
A
ARG
253
n
253
ARG
253
A
VAL
254
n
254
VAL
254
A
PHE
255
n
255
PHE
255
A
GLU
256
n
256
GLU
256
A
ILE
257
n
257
ILE
257
A
ASN
258
n
258
ASN
258
A
ARG
259
n
259
ARG
259
A
ASN
260
n
260
ASN
260
A
PHE
261
n
261
PHE
261
A
ARG
262
n
262
ARG
262
A
ASN
263
n
263
ASN
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
ILE
266
n
266
ILE
266
A
SER
267
n
267
SER
267
A
VAL
268
n
268
VAL
268
A
ARG
269
n
269
ARG
269
A
HIS
270
n
270
HIS
270
A
ASN
271
n
271
ASN
271
A
PRO
272
n
272
PRO
272
A
GLU
273
n
273
GLU
273
A
PHE
274
n
274
PHE
274
A
THR
275
n
275
THR
275
A
MET
276
n
276
MET
276
A
MET
277
n
277
MET
277
A
GLU
278
n
278
GLU
278
A
LEU
279
n
279
LEU
279
A
TYR
280
n
280
TYR
280
A
MET
281
n
281
MET
281
A
ALA
282
n
282
ALA
282
A
TYR
283
n
283
TYR
283
A
ALA
284
n
284
ALA
284
A
ASP
285
n
285
ASP
285
A
TYR
286
n
286
TYR
286
A
HIS
287
n
287
HIS
287
A
ASP
288
n
288
ASP
288
A
LEU
289
n
289
LEU
289
A
ILE
290
n
290
ILE
290
A
GLU
291
n
291
GLU
291
A
LEU
292
n
292
LEU
292
A
THR
293
n
293
THR
293
A
GLU
294
n
294
GLU
294
A
SER
295
n
295
SER
295
A
LEU
296
n
296
LEU
296
A
PHE
297
n
297
PHE
297
A
ARG
298
n
298
ARG
298
A
THR
299
n
299
THR
299
A
LEU
300
n
300
LEU
300
A
ALA
301
n
301
ALA
301
A
GLN
302
n
302
GLN
302
A
GLU
303
n
303
GLU
303
A
VAL
304
n
304
VAL
304
A
LEU
305
n
305
LEU
305
A
GLY
306
n
306
GLY
306
A
THR
307
n
307
THR
307
A
THR
308
n
308
THR
308
A
LYS
309
n
309
LYS
309
A
VAL
310
n
310
VAL
310
A
THR
311
n
311
THR
311
A
TYR
312
n
312
TYR
312
A
GLY
313
n
313
GLY
313
A
GLU
314
n
314
GLU
314
A
HIS
315
n
315
HIS
315
A
VAL
316
n
316
VAL
316
A
PHE
317
n
317
PHE
317
A
ASP
318
n
318
ASP
318
A
PHE
319
n
319
PHE
319
A
GLY
320
n
320
GLY
320
A
LYS
321
n
321
LYS
321
A
PRO
322
n
322
PRO
322
A
PHE
323
n
323
PHE
323
A
GLU
324
n
324
GLU
324
A
LYS
325
n
325
LYS
325
A
LEU
326
n
326
LEU
326
A
THR
327
n
327
THR
327
A
MET
328
n
328
MET
328
A
ARG
329
n
329
ARG
329
A
GLU
330
n
330
GLU
330
A
ALA
331
n
331
ALA
331
A
ILE
332
n
332
ILE
332
A
LYS
333
n
333
LYS
333
A
LYS
334
n
334
LYS
334
A
TYR
335
n
335
TYR
335
A
ARG
336
n
336
ARG
336
A
PRO
337
n
337
PRO
337
A
GLU
338
n
338
GLU
338
A
THR
339
n
339
THR
339
A
ASP
340
n
340
ASP
340
A
MET
341
n
341
MET
341
A
ALA
342
n
342
ALA
342
A
ASP
343
n
343
ASP
343
A
LEU
344
n
344
LEU
344
A
ASP
345
n
345
ASP
345
A
ASN
346
n
346
ASN
346
A
PHE
347
n
347
PHE
347
A
ASP
348
n
348
ASP
348
A
ALA
349
n
349
ALA
349
A
ALA
350
n
350
ALA
350
A
LYS
351
n
351
LYS
351
A
ALA
352
n
352
ALA
352
A
LEU
353
n
353
LEU
353
A
ALA
354
n
354
ALA
354
A
GLU
355
n
355
GLU
355
A
SER
356
n
356
SER
356
A
ILE
357
n
357
ILE
357
A
GLY
358
n
358
GLY
358
A
ILE
359
n
359
ILE
359
A
THR
360
n
360
THR
360
A
VAL
361
n
361
VAL
361
A
GLU
362
n
362
GLU
362
A
LYS
363
n
363
LYS
363
A
SER
364
n
364
SER
364
A
TRP
365
n
365
TRP
365
A
GLY
366
n
366
GLY
366
A
LEU
367
n
367
LEU
367
A
GLY
368
n
368
GLY
368
A
ARG
369
n
369
ARG
369
A
ILE
370
n
370
ILE
370
A
VAL
371
n
371
VAL
371
A
THR
372
n
372
THR
372
A
GLU
373
n
373
GLU
373
A
ILE
374
n
374
ILE
374
A
PHE
375
n
375
PHE
375
A
ASP
376
n
376
ASP
376
A
GLU
377
n
377
GLU
377
A
VAL
378
n
378
VAL
378
A
ALA
379
n
379
ALA
379
A
GLU
380
n
380
GLU
380
A
ALA
381
n
381
ALA
381
A
HIS
382
n
382
HIS
382
A
LEU
383
n
383
LEU
383
A
ILE
384
n
384
ILE
384
A
GLN
385
n
385
GLN
385
A
PRO
386
n
386
PRO
386
A
THR
387
n
387
THR
387
A
PHE
388
n
388
PHE
388
A
ILE
389
n
389
ILE
389
A
THR
390
n
390
THR
390
A
GLU
391
n
391
GLU
391
A
TYR
392
n
392
TYR
392
A
PRO
393
n
393
PRO
393
A
ALA
394
n
394
ALA
394
A
GLU
395
n
395
GLU
395
A
VAL
396
n
396
VAL
396
A
SER
397
n
397
SER
397
A
PRO
398
n
398
PRO
398
A
LEU
399
n
399
LEU
399
A
ALA
400
n
400
ALA
400
A
ARG
401
n
401
ARG
401
A
ARG
402
n
402
ARG
402
A
ASN
403
n
403
ASN
403
A
ASP
404
n
404
ASP
404
A
VAL
405
n
405
VAL
405
A
ASN
406
n
406
ASN
406
A
PRO
407
n
407
PRO
407
A
GLU
408
n
408
GLU
408
A
ILE
409
n
409
ILE
409
A
THR
410
n
410
THR
410
A
ASP
411
n
411
ASP
411
A
ARG
412
n
412
ARG
412
A
PHE
413
n
413
PHE
413
A
GLU
414
n
414
GLU
414
A
PHE
415
n
415
PHE
415
A
PHE
416
n
416
PHE
416
A
ILE
417
n
417
ILE
417
A
GLY
418
n
418
GLY
418
A
GLY
419
n
419
GLY
419
A
ARG
420
n
420
ARG
420
A
GLU
421
n
421
GLU
421
A
ILE
422
n
422
ILE
422
A
GLY
423
n
423
GLY
423
A
ASN
424
n
424
ASN
424
A
GLY
425
n
425
GLY
425
A
PHE
426
n
426
PHE
426
A
SER
427
n
427
SER
427
A
GLU
428
n
428
GLU
428
A
LEU
429
n
429
LEU
429
A
ASN
430
n
430
ASN
430
A
ASP
431
n
431
ASP
431
A
ALA
432
n
432
ALA
432
A
GLU
433
n
433
GLU
433
A
ASP
434
n
434
ASP
434
A
GLN
435
n
435
GLN
435
A
ALA
436
n
436
ALA
436
A
GLU
437
n
437
GLU
437
A
ARG
438
n
438
ARG
438
A
PHE
439
n
439
PHE
439
A
GLN
440
n
440
GLN
440
A
GLU
441
n
441
GLU
441
A
GLN
442
n
442
GLN
442
A
VAL
443
n
443
VAL
443
A
ASN
444
n
444
ASN
444
A
ALA
445
n
445
ALA
445
A
LYS
446
n
446
LYS
446
A
ALA
447
n
447
ALA
447
A
ALA
448
n
448
ALA
448
A
GLY
449
n
449
GLY
449
A
ASP
450
n
450
ASP
450
A
ASP
451
n
451
ASP
451
A
GLU
452
n
452
GLU
452
A
ALA
453
n
453
ALA
453
A
MET
454
n
454
MET
454
A
PHE
455
n
455
PHE
455
A
TYR
456
n
456
TYR
456
A
ASP
457
n
457
ASP
457
A
GLU
458
n
458
GLU
458
A
ASP
459
n
459
ASP
459
A
TYR
460
n
460
TYR
460
A
VAL
461
n
461
VAL
461
A
THR
462
n
462
THR
462
A
ALA
463
n
463
ALA
463
A
LEU
464
n
464
LEU
464
A
GLU
465
n
465
GLU
465
A
TYR
466
n
466
TYR
466
A
GLY
467
n
467
GLY
467
A
LEU
468
n
468
LEU
468
A
PRO
469
n
469
PRO
469
A
PRO
470
n
470
PRO
470
A
THR
471
n
471
THR
471
A
ALA
472
n
472
ALA
472
A
GLY
473
n
473
GLY
473
A
LEU
474
n
474
LEU
474
A
GLY
475
n
475
GLY
475
A
ILE
476
n
476
ILE
476
A
GLY
477
n
477
GLY
477
A
ILE
478
n
478
ILE
478
A
ASP
479
n
479
ASP
479
A
ARG
480
n
480
ARG
480
A
MET
481
n
481
MET
481
A
ILE
482
n
482
ILE
482
A
MET
483
n
483
MET
483
A
LEU
484
n
484
LEU
484
A
PHE
485
n
485
PHE
485
A
THR
486
n
486
THR
486
A
ASN
487
n
487
ASN
487
A
SER
488
n
488
SER
488
A
HIS
489
n
489
HIS
489
A
THR
490
n
490
THR
490
A
ILE
491
n
491
ILE
491
A
ARG
492
n
492
ARG
492
A
ASP
493
n
493
ASP
493
A
VAL
494
n
494
VAL
494
A
ILE
495
n
495
ILE
495
A
LEU
496
n
496
LEU
496
A
PHE
497
n
497
PHE
497
A
PRO
498
n
498
PRO
498
A
ALA
499
n
499
ALA
499
A
MET
500
n
500
MET
500
A
ARG
501
n
501
ARG
501
A
PRO
502
n
502
PRO
502
A
n
503
503
A
n
504
504
A
author_and_software_defined_assembly
PISA
2
dimeric
14310
-101.0
35380
A
GLU
414
A
OE2
GLU
414
1_555
A
MG
515
D
MG
MG
1_555
A
GLU
421
A
OE2
GLU
421
1_555
57.3
A
GLU
414
A
OE2
GLU
414
1_555
A
MG
515
D
MG
MG
1_555
A
ACP
512
C
O1A
ACP
1_555
89.6
A
GLU
421
A
OE2
GLU
421
1_555
A
MG
515
D
MG
MG
1_555
A
ACP
512
C
O1A
ACP
1_555
58.2
A
GLU
414
A
OE2
GLU
414
1_555
A
MG
515
D
MG
MG
1_555
A
ACP
512
C
O1B
ACP
1_555
123.5
A
GLU
421
A
OE2
GLU
421
1_555
A
MG
515
D
MG
MG
1_555
A
ACP
512
C
O1B
ACP
1_555
68.4
A
ACP
512
C
O1A
ACP
1_555
A
MG
515
D
MG
MG
1_555
A
ACP
512
C
O1B
ACP
1_555
73.5
A
GLU
421
A
OE1
GLU
421
1_555
A
MG
517
F
MG
MG
1_555
A
ACP
512
C
O1B
ACP
1_555
71.2
A
GLU
421
A
OE1
GLU
421
1_555
A
MG
517
F
MG
MG
1_555
A
ACP
512
C
O3G
ACP
1_555
72.5
A
ACP
512
C
O1B
ACP
1_555
A
MG
517
F
MG
MG
1_555
A
ACP
512
C
O3G
ACP
1_555
80.1
A
ACP
512
C
O2B
ACP
1_555
A
MG
516
E
MG
MG
1_555
A
ACP
512
C
O1G
ACP
1_555
74.5
A
ACP
512
C
O2B
ACP
1_555
A
MG
516
E
MG
MG
1_555
A
HOH
2172
M
O
HOH
1_555
78.9
A
ACP
512
C
O1G
ACP
1_555
A
MG
516
E
MG
MG
1_555
A
HOH
2172
M
O
HOH
1_555
153.3
A
ACP
512
C
O2B
ACP
1_555
A
MG
516
E
MG
MG
1_555
A
HOH
2303
M
O
HOH
1_555
66.1
A
ACP
512
C
O1G
ACP
1_555
A
MG
516
E
MG
MG
1_555
A
HOH
2303
M
O
HOH
1_555
111.6
A
HOH
2172
M
O
HOH
1_555
A
MG
516
E
MG
MG
1_555
A
HOH
2303
M
O
HOH
1_555
53.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
58.4633333333
A
O
VAL
67
A
O
VAL
67
A
N
GLY
125
A
N
GLY
125
A
O
THR
126
A
O
THR
126
A
N
HIS
138
A
N
HIS
138
A
O
ILE
137
A
O
ILE
137
A
N
GLN
95
A
N
GLN
95
A
O
GLY
92
A
O
GLY
92
A
N
ASP
89
A
N
ASP
89
A
O
ALA
82
A
O
ALA
82
A
N
MET
79
A
N
MET
79
A
O
THR
224
A
O
THR
224
A
N
MET
233
A
N
MET
233
A
O
VAL
254
A
O
VAL
254
A
N
TYR
280
A
N
TYR
280
A
O
MET
277
A
O
MET
277
A
N
ILE
476
A
N
ILE
476
A
O
GLY
473
A
O
GLY
473
A
N
PHE
426
A
N
PHE
426
A
O
ARG
420
A
O
ARG
420
A
N
ILE
417
A
N
ILE
417
A
O
GLU
414
A
O
GLU
414
A
N
ILE
389
A
N
ILE
389
A
O
PHE
388
A
O
PHE
388
A
N
GLU
324
A
N
GLU
324
A
O
VAL
310
A
O
VAL
310
A
N
PHE
317
A
N
PHE
317
A
O
ILE
120
A
O
ILE
120
A
N
THR
146
A
N
THR
146
1
A
CG1
ILE
12
A
CG1
ILE
12
1
Y
1
A
CG2
ILE
12
A
CG2
ILE
12
1
Y
1
A
CD1
ILE
12
A
CD1
ILE
12
1
Y
1
A
CG
ASP
13
A
CG
ASP
13
1
Y
1
A
OD1
ASP
13
A
OD1
ASP
13
1
Y
1
A
OD2
ASP
13
A
OD2
ASP
13
1
Y
1
A
NE
ARG
19
A
NE
ARG
19
1
Y
1
A
CZ
ARG
19
A
CZ
ARG
19
1
Y
1
A
NH1
ARG
19
A
NH1
ARG
19
1
Y
1
A
NH2
ARG
19
A
NH2
ARG
19
1
Y
1
A
CG
GLU
50
A
CG
GLU
50
1
Y
1
A
CD
GLU
50
A
CD
GLU
50
1
Y
1
A
OE1
GLU
50
A
OE1
GLU
50
1
Y
1
A
OE2
GLU
50
A
OE2
GLU
50
1
Y
1
A
CE
LYS
55
A
CE
LYS
55
1
Y
1
A
NZ
LYS
55
A
NZ
LYS
55
1
Y
1
A
CG
GLN
58
A
CG
GLN
58
1
Y
1
A
CD
GLN
58
A
CD
GLN
58
1
Y
1
A
OE1
GLN
58
A
OE1
GLN
58
1
Y
1
A
NE2
GLN
58
A
NE2
GLN
58
1
Y
1
A
CG
GLU
61
A
CG
GLU
61
1
Y
1
A
CD
GLU
61
A
CD
GLU
61
1
Y
1
A
OE1
GLU
61
A
OE1
GLU
61
1
Y
1
A
OE2
GLU
61
A
OE2
GLU
61
1
Y
1
A
CG
ARG
77
A
CG
ARG
77
1
Y
1
A
CD
ARG
77
A
CD
ARG
77
1
Y
1
A
NE
ARG
77
A
NE
ARG
77
1
Y
1
A
CZ
ARG
77
A
CZ
ARG
77
1
Y
1
A
NH1
ARG
77
A
NH1
ARG
77
1
Y
1
A
NH2
ARG
77
A
NH2
ARG
77
1
Y
1
A
CG
GLN
131
A
CG
GLN
131
1
Y
1
A
CD
GLN
131
A
CD
GLN
131
1
Y
1
A
OE1
GLN
131
A
OE1
GLN
131
1
Y
1
A
NE2
GLN
131
A
NE2
GLN
131
1
Y
1
A
CG
GLU
134
A
CG
GLU
134
1
Y
1
A
CD
GLU
134
A
CD
GLU
134
1
Y
1
A
OE1
GLU
134
A
OE1
GLU
134
1
Y
1
A
OE2
GLU
134
A
OE2
GLU
134
1
Y
1
A
CG
ASP
161
A
CG
ASP
161
1
Y
1
A
OD1
ASP
161
A
OD1
ASP
161
1
Y
1
A
OD2
ASP
161
A
OD2
ASP
161
1
Y
1
A
CG
GLN
162
A
CG
GLN
162
1
Y
1
A
CD
GLN
162
A
CD
GLN
162
1
Y
1
A
OE1
GLN
162
A
OE1
GLN
162
1
Y
1
A
NE2
GLN
162
A
NE2
GLN
162
1
Y
1
A
CG
GLU
163
A
CG
GLU
163
1
Y
1
A
CD
GLU
163
A
CD
GLU
163
1
Y
1
A
OE1
GLU
163
A
OE1
GLU
163
1
Y
1
A
OE2
GLU
163
A
OE2
GLU
163
1
Y
1
A
CG
LYS
178
A
CG
LYS
178
1
Y
1
A
CD
LYS
178
A
CD
LYS
178
1
Y
1
A
CE
LYS
178
A
CE
LYS
178
1
Y
1
A
NZ
LYS
178
A
NZ
LYS
178
1
Y
1
A
CD
GLN
195
A
CD
GLN
195
1
Y
1
A
OE1
GLN
195
A
OE1
GLN
195
1
Y
1
A
NE2
GLN
195
A
NE2
GLN
195
1
Y
1
A
NE
ARG
220
A
NE
ARG
220
1
Y
1
A
CZ
ARG
220
A
CZ
ARG
220
1
Y
1
A
NH1
ARG
220
A
NH1
ARG
220
1
Y
1
A
NH2
ARG
220
A
NH2
ARG
220
1
Y
1
A
CG
GLU
291
A
CG
GLU
291
1
Y
1
A
CD
GLU
291
A
CD
GLU
291
1
Y
1
A
OE1
GLU
291
A
OE1
GLU
291
1
Y
1
A
OE2
GLU
291
A
OE2
GLU
291
1
Y
1
A
CG
GLU
303
A
CG
GLU
303
1
Y
1
A
CD
GLU
303
A
CD
GLU
303
1
Y
1
A
OE1
GLU
303
A
OE1
GLU
303
1
Y
1
A
OE2
GLU
303
A
OE2
GLU
303
1
Y
1
A
CE
LYS
309
A
CE
LYS
309
1
Y
1
A
NZ
LYS
309
A
NZ
LYS
309
1
Y
1
A
CG
GLU
314
A
CG
GLU
314
1
Y
1
A
CD
GLU
314
A
CD
GLU
314
1
Y
1
A
OE1
GLU
314
A
OE1
GLU
314
1
Y
1
A
OE2
GLU
314
A
OE2
GLU
314
1
Y
1
A
CG
LYS
321
A
CG
LYS
321
1
Y
1
A
CD
LYS
321
A
CD
LYS
321
1
Y
1
A
CE
LYS
321
A
CE
LYS
321
1
Y
1
A
NZ
LYS
321
A
NZ
LYS
321
1
Y
1
A
CG
GLU
324
A
CG
GLU
324
1
Y
1
A
CD
GLU
324
A
CD
GLU
324
1
Y
1
A
OE1
GLU
324
A
OE1
GLU
324
1
Y
1
A
OE2
GLU
324
A
OE2
GLU
324
1
Y
1
A
CG
ASP
345
A
CG
ASP
345
1
Y
1
A
OD1
ASP
345
A
OD1
ASP
345
1
Y
1
A
OD2
ASP
345
A
OD2
ASP
345
1
Y
1
A
CG
ASP
451
A
CG
ASP
451
1
Y
1
A
OD1
ASP
451
A
OD1
ASP
451
1
Y
1
A
OD2
ASP
451
A
OD2
ASP
451
1
Y
1
A
CG
GLU
458
A
CG
GLU
458
1
Y
1
A
CD
GLU
458
A
CD
GLU
458
1
Y
1
A
OE1
GLU
458
A
OE1
GLU
458
1
Y
1
A
OE2
GLU
458
A
OE2
GLU
458
1
Y
1
A
SER
1
A
SER
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
ARG
6
A
ARG
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
ALA
8
A
ALA
8
1
Y
1
A
ASN
9
A
ASN
9
1
Y
1
A
GLU
10
A
GLU
10
1
Y
1
A
ASP
154
A
ASP
154
1
Y
1
A
LYS
155
A
LYS
155
1
Y
1
A
PHE
156
A
PHE
156
1
Y
1
A
HIS
157
A
HIS
157
1
Y
1
A
GLY
158
A
GLY
158
1
Y
1
A
LEU
159
A
LEU
159
1
Y
1
A
GLN
160
A
GLN
160
1
Y
1
A
GLN
503
A
GLN
503
1
Y
1
A
LYS
504
A
LYS
504
1
Y
1
A
ASP
38
-145.16
-29.77
1
A
ASP
89
-128.12
-169.29
1
A
ASP
230
39.03
48.27
1
A
ALA
238
-170.41
144.54
1
A
ARG
336
-153.92
67.55
1
A
ASP
450
-64.60
88.87
PROTEIN_REP.PARAM
TOPHCSDX.PRO
THE ASSIGNMENT OF THE ELECTRON DENSITY PEAKS AS MG2+ IONSIS BASED ON THE POSITIONS OBSERVED FOR METAL IONS WHEN THE ELECTRON-DENSE MN2+ IONS WERE USED
0.228
0.006
.176
.176
2.43
12.0
1347
33420
4.0
84.7
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1E1O
20.0
2.43
12.0
306
4202
80
0
3816
0.006
1.4
20.4
2.4
2.39
1.5
3.66
2.0
4.52
2.0
6.9
2.5
0.329
0.03
0.257
2.54
127
2895
8
4.3
65.1
2.430
25.000
1E22
33781
0.06500
0.06500
1
8.1000
3.600
84.7
0.09900
2.43
2.54
6.300
0.09900
1
3.10
65.1
refinement
X-PLOR
3.1
data reduction
MOSFLM
data scaling
CCP4
phasing
X-PLOR
3.1
LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM complexed with lysine and the non-hydrolysable atp analogue amp-pcp
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
ALA
11
A
ALA
11
HELX_P
A
GLY
32
A
GLY
32
1
1
22
A
THR
44
A
THR
44
HELX_P
A
ASP
53
A
ASP
53
1
2
10
A
ASP
56
A
ASP
56
HELX_P
A
ASN
64
A
ASN
64
1
3
9
A
GLY
106
A
GLY
106
HELX_P
A
GLN
111
A
GLN
111
1
4
6
A
PHE
112
A
PHE
112
HELX_P
A
TRP
115
A
TRP
115
5
5
4
A
GLN
162
A
GLN
162
HELX_P
A
GLN
168
A
GLN
168
1
6
7
A
GLN
168
A
GLN
168
HELX_P
A
ASN
176
A
ASN
176
1
7
9
A
ASN
176
A
ASN
176
HELX_P
A
ARG
200
A
ARG
200
1
8
25
A
PRO
239
A
PRO
239
HELX_P
A
GLY
250
A
GLY
250
1
9
12
A
ASP
285
A
ASP
285
HELX_P
A
GLY
306
A
GLY
306
1
10
22
A
MET
328
A
MET
328
HELX_P
A
ARG
336
A
ARG
336
1
11
9
A
ASP
340
A
ASP
340
HELX_P
A
ASP
345
A
ASP
345
5
12
6
A
ASN
346
A
ASN
346
HELX_P
A
ILE
357
A
ILE
357
1
13
12
A
GLY
366
A
GLY
366
HELX_P
A
ALA
379
A
ALA
379
1
14
14
A
GLU
380
A
GLU
380
HELX_P
A
LEU
383
A
LEU
383
5
15
4
A
ALA
394
A
ALA
394
HELX_P
A
SER
397
A
SER
397
5
16
4
A
ASP
431
A
ASP
431
HELX_P
A
ALA
448
A
ALA
448
1
17
18
A
ASP
457
A
ASP
457
HELX_P
A
GLY
467
A
GLY
467
1
18
11
A
ILE
478
A
ILE
478
HELX_P
A
THR
486
A
THR
486
1
19
9
A
THR
490
A
THR
490
HELX_P
A
VAL
494
A
VAL
494
5
20
5
metalc
2.345
A
GLU
414
A
OE2
GLU
414
1_555
A
MG
515
D
MG
MG
1_555
metalc
2.815
A
GLU
421
A
OE2
GLU
421
1_555
A
MG
515
D
MG
MG
1_555
metalc
2.301
A
GLU
421
A
OE1
GLU
421
1_555
A
MG
517
F
MG
MG
1_555
metalc
2.263
A
ACP
512
C
O1A
ACP
1_555
A
MG
515
D
MG
MG
1_555
metalc
2.434
A
ACP
512
C
O1B
ACP
1_555
A
MG
515
D
MG
MG
1_555
metalc
2.460
A
ACP
512
C
O2B
ACP
1_555
A
MG
516
E
MG
MG
1_555
metalc
2.755
A
ACP
512
C
O1G
ACP
1_555
A
MG
516
E
MG
MG
1_555
metalc
2.443
A
ACP
512
C
O1B
ACP
1_555
A
MG
517
F
MG
MG
1_555
metalc
2.361
A
ACP
512
C
O3G
ACP
1_555
A
MG
517
F
MG
MG
1_555
metalc
2.898
A
MG
516
E
MG
MG
1_555
A
HOH
2172
M
O
HOH
1_555
metalc
2.759
A
MG
516
E
MG
MG
1_555
A
HOH
2303
M
O
HOH
1_555
LIGASE
LIGASE, AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS
SYK2_ECOLI
UNP
1
P14825
1
504
1E22
1
504
P14825
A
1
1
504
6
2
7
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
66
A
GLU
66
A
ARG
72
A
ARG
72
A
ILE
120
A
ILE
120
A
LYS
129
A
LYS
129
A
LEU
135
A
LEU
135
A
CYS
139
A
CYS
139
A
GLY
92
A
GLY
92
A
ALA
99
A
ALA
99
A
ALA
82
A
ALA
82
A
ASP
89
A
ASP
89
A
ARG
72
A
ARG
72
A
MET
79
A
MET
79
A
ILE
223
A
ILE
223
A
HIS
226
A
HIS
226
A
LEU
231
A
LEU
231
A
TYR
234
A
TYR
234
A
ARG
253
A
ARG
253
A
PHE
261
A
PHE
261
A
GLU
273
A
GLU
273
A
ALA
282
A
ALA
282
A
THR
471
A
THR
471
A
GLY
477
A
GLY
477
A
ARG
420
A
ARG
420
A
SER
427
A
SER
427
A
ARG
412
A
ARG
412
A
ILE
417
A
ILE
417
A
THR
387
A
THR
387
A
THR
390
A
THR
390
A
GLU
324
A
GLU
324
A
THR
327
A
THR
327
A
LYS
309
A
LYS
309
A
TYR
312
A
TYR
312
A
HIS
315
A
HIS
315
A
ASP
318
A
ASP
318
A
ILE
120
A
ILE
120
A
ARG
124
A
ARG
124
A
GLU
141
A
GLU
141
A
THR
146
A
THR
146
BINDING SITE FOR RESIDUE MG A 515
A
MG
515
Software
5
BINDING SITE FOR RESIDUE MG A 516
A
MG
516
Software
4
BINDING SITE FOR RESIDUE MG A 517
A
MG
517
Software
3
BINDING SITE FOR RESIDUE LYS A 510
A
LYS
510
Software
13
BINDING SITE FOR RESIDUE ACP A 512
A
ACP
512
Software
21
BINDING SITE FOR RESIDUE GOL A 520
A
GOL
520
Software
6
BINDING SITE FOR RESIDUE GOL A 521
A
GOL
521
Software
8
BINDING SITE FOR RESIDUE GOL A 522
A
GOL
522
Software
6
BINDING SITE FOR RESIDUE GOL A 523
A
GOL
523
Software
10
BINDING SITE FOR RESIDUE GOL A 524
A
GOL
524
Software
12
BINDING SITE FOR RESIDUE GOL A 525
A
GOL
525
Software
7
A
ARG
412
A
ARG
412
5
1_555
A
GLU
414
A
GLU
414
5
1_555
A
GLU
421
A
GLU
421
5
1_555
A
ACP
512
C
ACP
5
1_555
A
MG
517
F
MG
5
1_555
A
GLU
264
A
GLU
264
4
1_555
A
ACP
512
C
ACP
4
1_555
A
HOH
2172
M
HOH
4
1_555
A
HOH
2303
M
HOH
4
1_555
A
GLU
421
A
GLU
421
3
1_555
A
ACP
512
C
ACP
3
1_555
A
MG
515
D
MG
3
1_555
A
GLY
216
A
GLY
216
13
1_555
A
ALA
217
A
ALA
217
13
1_555
A
GLU
240
A
GLU
240
13
1_555
A
ARG
262
A
ARG
262
13
1_555
A
MET
276
A
MET
276
13
1_555
A
GLU
278
A
GLU
278
13
1_555
A
TYR
280
A
TYR
280
13
1_555
A
ASN
424
A
ASN
424
13
1_555
A
PHE
426
A
PHE
426
13
1_555
A
GLU
428
A
GLU
428
13
1_555
A
GLY
473
A
GLY
473
13
1_555
A
ACP
512
C
ACP
13
1_555
A
GOL
523
J
GOL
13
1_555
A
ARG
262
A
ARG
262
21
1_555
A
GLU
264
A
GLU
264
21
1_555
A
ARG
269
A
ARG
269
21
1_555
A
HIS
270
A
HIS
270
21
1_555
A
ASN
271
A
ASN
271
21
1_555
A
PHE
274
A
PHE
274
21
1_555
A
GLU
380
A
GLU
380
21
1_555
A
GLU
414
A
GLU
414
21
1_555
A
GLU
421
A
GLU
421
21
1_555
A
ILE
422
A
ILE
422
21
1_555
A
GLY
477
A
GLY
477
21
1_555
A
ARG
480
A
ARG
480
21
1_555
A
ILE
491
A
ILE
491
21
1_555
A
LYS
510
B
LYS
21
1_555
A
MG
515
D
MG
21
1_555
A
MG
516
E
MG
21
1_555
A
MG
517
F
MG
21
1_555
A
GOL
523
J
GOL
21
1_555
A
HOH
2258
M
HOH
21
1_555
A
HOH
2302
M
HOH
21
1_555
A
HOH
2303
M
HOH
21
1_555
A
TYR
312
A
TYR
312
6
1_555
A
HIS
315
A
HIS
315
6
1_555
A
ILE
384
A
ILE
384
6
1_555
A
GLY
418
A
GLY
418
6
1_555
A
ARG
420
A
ARG
420
6
1_555
A
HIS
489
A
HIS
489
6
1_555
A
ARG
194
A
ARG
194
8
1_555
A
ARG
194
A
ARG
194
8
7_555
A
GLU
204
A
GLU
204
8
7_555
A
GLU
206
A
GLU
206
8
7_555
A
ILE
257
A
ILE
257
8
1_555
A
ASN
258
A
ASN
258
8
1_555
A
ASN
258
A
ASN
258
8
7_555
A
HOH
2169
M
HOH
8
1_555
A
TYR
286
A
TYR
286
6
1_555
A
GLU
391
A
GLU
391
6
1_555
A
ASN
403
A
ASN
403
6
1_555
A
THR
410
A
THR
410
6
1_555
A
ASP
411
A
ASP
411
6
1_555
A
ARG
412
A
ARG
412
6
1_555
A
ALA
217
A
ALA
217
10
1_555
A
SER
218
A
SER
218
10
1_555
A
VAL
396
A
VAL
396
10
1_555
A
ARG
412
A
ARG
412
10
1_555
A
ASN
424
A
ASN
424
10
1_555
A
PHE
426
A
PHE
426
10
1_555
A
LYS
510
B
LYS
10
1_555
A
ACP
512
C
ACP
10
1_555
A
HOH
2152
M
HOH
10
1_555
A
HOH
2305
M
HOH
10
1_555
A
PRO
214
A
PRO
214
12
1_555
A
GLY
215
A
GLY
215
12
1_555
A
ALA
217
A
ALA
217
12
1_555
A
SER
218
A
SER
218
12
1_555
A
ALA
219
A
ALA
219
12
1_555
A
PRO
221
A
PRO
221
12
1_555
A
ILE
237
A
ILE
237
12
1_555
A
LYS
446
A
LYS
446
12
1_555
A
GLU
452
A
GLU
452
12
1_555
A
ALA
453
A
ALA
453
12
1_555
A
MET
454
A
MET
454
12
1_555
A
PHE
455
A
PHE
455
12
1_555
A
VAL
33
A
VAL
33
7
6_555
A
LYS
333
A
LYS
333
7
1_555
A
ARG
402
A
ARG
402
7
11_555
A
ASN
403
A
ASN
403
7
11_555
A
ASP
404
A
ASP
404
7
11_555
A
HOH
2250
M
HOH
7
11_555
A
HOH
2306
M
HOH
7
1_555
178
P 61 2 2