0.019646
0.000000
0.000000
0.000000
0.012048
0.000000
0.000000
0.000000
0.008944
0.00000
0.00000
0.00000
Maenaka, K.
Maenaka, T.
Tomiyama, H.
Takiguchi, M.
Stuart, D.I.
Jones, E.Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.900
83.000
111.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J Immunol.
0022-1767
165
3260
3267
10.4049/jimmunol.165.6.3260
10975842
Nonstandard peptide binding revealed by crystal structures of HLA-B*5101 complexed with HIV immunodominant epitopes.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
PX9.6
SRS
0.97
SYNCHROTRON
SRS BEAMLINE PX9.6
32077.340
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN
EXTRACELLULAR RESIDUES 25-300
1
man
polymer
11748.160
BETA-2 MICROGLOBULIN LIGHT CHAIN
EXTRACELLULAR RESIDUES 21-119
1
man
polymer
848.983
PEPTIDE
EXTRACELLULAR RESIDUES 282-289
1
syn
polymer
B51
B2M
no
no
GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRPPWIEQEGPEYWDRNTQIFKTNTQTYRENLRI
ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQLRAYL
EGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRT
FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRPPWIEQEGPEYWDRNTQIFKTNTQTYRENLRI
ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQLRAYL
EGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRT
FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
A
polypeptide(L)
no
no
IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC
RVNHVTLSQPKIVKWDRDM
IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC
RVNHVTLSQPKIVKWDRDM
B
polypeptide(L)
no
no
TAFTIPSI
TAFTIPSI
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
CELL SURFACE
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGMT7
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
XA90
PHN1
1
2.64
53.46
6.50
pH 6.50
citation
entity_src_gen
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Source and taxonomy
1
0
2000-09-12
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-10-09
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
PDBE
Y
PDBE
2000-05-18
REL
11676
HIV-1
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
sample
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
MET
5
n
5
MET
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
TYR
9
n
9
TYR
9
A
THR
10
n
10
THR
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
GLN
32
n
32
GLN
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
SER
42
n
42
SER
42
A
PRO
43
n
43
PRO
43
A
ARG
44
n
44
ARG
44
A
THR
45
n
45
THR
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
PRO
49
n
49
PRO
49
A
PRO
50
n
50
PRO
50
A
TRP
51
n
51
TRP
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
ASP
61
n
61
ASP
61
A
ARG
62
n
62
ARG
62
A
ASN
63
n
63
ASN
63
A
THR
64
n
64
THR
64
A
GLN
65
n
65
GLN
65
A
ILE
66
n
66
ILE
66
A
PHE
67
n
67
PHE
67
A
LYS
68
n
68
LYS
68
A
THR
69
n
69
THR
69
A
ASN
70
n
70
ASN
70
A
THR
71
n
71
THR
71
A
GLN
72
n
72
GLN
72
A
THR
73
n
73
THR
73
A
TYR
74
n
74
TYR
74
A
ARG
75
n
75
ARG
75
A
GLU
76
n
76
GLU
76
A
ASN
77
n
77
ASN
77
A
LEU
78
n
78
LEU
78
A
ARG
79
n
79
ARG
79
A
ILE
80
n
80
ILE
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
GLU
89
n
89
GLU
89
A
ALA
90
n
90
ALA
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
TRP
95
n
95
TRP
95
A
GLN
96
n
96
GLN
96
A
THR
97
n
97
THR
97
A
MET
98
n
98
MET
98
A
TYR
99
n
99
TYR
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
VAL
103
n
103
VAL
103
A
GLY
104
n
104
GLY
104
A
PRO
105
n
105
PRO
105
A
ASP
106
n
106
ASP
106
A
GLY
107
n
107
GLY
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
HIS
113
n
113
HIS
113
A
ASN
114
n
114
ASN
114
A
GLN
115
n
115
GLN
115
A
TYR
116
n
116
TYR
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
ASP
119
n
119
ASP
119
A
GLY
120
n
120
GLY
120
A
LYS
121
n
121
LYS
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
ASN
127
n
127
ASN
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
SER
131
n
131
SER
131
A
SER
132
n
132
SER
132
A
TRP
133
n
133
TRP
133
A
THR
134
n
134
THR
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
THR
138
n
138
THR
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
ILE
142
n
142
ILE
142
A
THR
143
n
143
THR
143
A
GLN
144
n
144
GLN
144
A
ARG
145
n
145
ARG
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
ALA
149
n
149
ALA
149
A
ALA
150
n
150
ALA
150
A
ARG
151
n
151
ARG
151
A
GLU
152
n
152
GLU
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
GLN
155
n
155
GLN
155
A
LEU
156
n
156
LEU
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
LEU
163
n
163
LEU
163
A
CYS
164
n
164
CYS
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
ARG
170
n
170
ARG
170
A
HIS
171
n
171
HIS
171
A
LEU
172
n
172
LEU
172
A
GLU
173
n
173
GLU
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
LYS
176
n
176
LYS
176
A
GLU
177
n
177
GLU
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
GLN
180
n
180
GLN
180
A
ARG
181
n
181
ARG
181
A
ALA
182
n
182
ALA
182
A
ASP
183
n
183
ASP
183
A
PRO
184
n
184
PRO
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
THR
187
n
187
THR
187
A
HIS
188
n
188
HIS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
PRO
193
n
193
PRO
193
A
VAL
194
n
194
VAL
194
A
SER
195
n
195
SER
195
A
ASP
196
n
196
ASP
196
A
HIS
197
n
197
HIS
197
A
GLU
198
n
198
GLU
198
A
ALA
199
n
199
ALA
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
GLU
212
n
212
GLU
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
GLN
218
n
218
GLN
218
A
ARG
219
n
219
ARG
219
A
ASP
220
n
220
ASP
220
A
GLY
221
n
221
GLY
221
A
GLU
222
n
222
GLU
222
A
ASP
223
n
223
ASP
223
A
GLN
224
n
224
GLN
224
A
THR
225
n
225
THR
225
A
GLN
226
n
226
GLN
226
A
ASP
227
n
227
ASP
227
A
THR
228
n
228
THR
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
ARG
239
n
239
ARG
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
ALA
245
n
245
ALA
245
A
ALA
246
n
246
ALA
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
SER
251
n
251
SER
251
A
GLY
252
n
252
GLY
252
A
GLU
253
n
253
GLU
253
A
GLU
254
n
254
GLU
254
A
GLN
255
n
255
GLN
255
A
ARG
256
n
256
ARG
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
HIS
260
n
260
HIS
260
A
VAL
261
n
261
VAL
261
A
GLN
262
n
262
GLN
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
LYS
268
n
268
LYS
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
GLU
275
n
275
GLU
275
A
PRO
276
n
276
PRO
276
A
ILE
1
n
1
ILE
1
B
GLN
2
n
2
GLN
2
B
ARG
3
n
3
ARG
3
B
THR
4
n
4
THR
4
B
PRO
5
n
5
PRO
5
B
LYS
6
n
6
LYS
6
B
ILE
7
n
7
ILE
7
B
GLN
8
n
8
GLN
8
B
VAL
9
n
9
VAL
9
B
TYR
10
n
10
TYR
10
B
SER
11
n
11
SER
11
B
ARG
12
n
12
ARG
12
B
HIS
13
n
13
HIS
13
B
PRO
14
n
14
PRO
14
B
ALA
15
n
15
ALA
15
B
GLU
16
n
16
GLU
16
B
ASN
17
n
17
ASN
17
B
GLY
18
n
18
GLY
18
B
LYS
19
n
19
LYS
19
B
SER
20
n
20
SER
20
B
ASN
21
n
21
ASN
21
B
PHE
22
n
22
PHE
22
B
LEU
23
n
23
LEU
23
B
ASN
24
n
24
ASN
24
B
CYS
25
n
25
CYS
25
B
TYR
26
n
26
TYR
26
B
VAL
27
n
27
VAL
27
B
SER
28
n
28
SER
28
B
GLY
29
n
29
GLY
29
B
PHE
30
n
30
PHE
30
B
HIS
31
n
31
HIS
31
B
PRO
32
n
32
PRO
32
B
SER
33
n
33
SER
33
B
ASP
34
n
34
ASP
34
B
ILE
35
n
35
ILE
35
B
GLU
36
n
36
GLU
36
B
VAL
37
n
37
VAL
37
B
ASP
38
n
38
ASP
38
B
LEU
39
n
39
LEU
39
B
LEU
40
n
40
LEU
40
B
LYS
41
n
41
LYS
41
B
ASN
42
n
42
ASN
42
B
GLY
43
n
43
GLY
43
B
GLU
44
n
44
GLU
44
B
ARG
45
n
45
ARG
45
B
ILE
46
n
46
ILE
46
B
GLU
47
n
47
GLU
47
B
LYS
48
n
48
LYS
48
B
VAL
49
n
49
VAL
49
B
GLU
50
n
50
GLU
50
B
HIS
51
n
51
HIS
51
B
SER
52
n
52
SER
52
B
ASP
53
n
53
ASP
53
B
LEU
54
n
54
LEU
54
B
SER
55
n
55
SER
55
B
PHE
56
n
56
PHE
56
B
SER
57
n
57
SER
57
B
LYS
58
n
58
LYS
58
B
ASP
59
n
59
ASP
59
B
TRP
60
n
60
TRP
60
B
SER
61
n
61
SER
61
B
PHE
62
n
62
PHE
62
B
TYR
63
n
63
TYR
63
B
LEU
64
n
64
LEU
64
B
LEU
65
n
65
LEU
65
B
TYR
66
n
66
TYR
66
B
TYR
67
n
67
TYR
67
B
THR
68
n
68
THR
68
B
GLU
69
n
69
GLU
69
B
PHE
70
n
70
PHE
70
B
THR
71
n
71
THR
71
B
PRO
72
n
72
PRO
72
B
THR
73
n
73
THR
73
B
GLU
74
n
74
GLU
74
B
LYS
75
n
75
LYS
75
B
ASP
76
n
76
ASP
76
B
GLU
77
n
77
GLU
77
B
TYR
78
n
78
TYR
78
B
ALA
79
n
79
ALA
79
B
CYS
80
n
80
CYS
80
B
ARG
81
n
81
ARG
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
HIS
84
n
84
HIS
84
B
VAL
85
n
85
VAL
85
B
THR
86
n
86
THR
86
B
LEU
87
n
87
LEU
87
B
SER
88
n
88
SER
88
B
GLN
89
n
89
GLN
89
B
PRO
90
n
90
PRO
90
B
LYS
91
n
91
LYS
91
B
ILE
92
n
92
ILE
92
B
VAL
93
n
93
VAL
93
B
LYS
94
n
94
LYS
94
B
TRP
95
n
95
TRP
95
B
ASP
96
n
96
ASP
96
B
ARG
97
n
97
ARG
97
B
ASP
98
n
98
ASP
98
B
MET
99
n
99
MET
99
B
THR
1
n
1
THR
1
C
ALA
2
n
2
ALA
2
C
PHE
3
n
3
PHE
3
C
THR
4
n
4
THR
4
C
ILE
5
n
5
ILE
5
C
PRO
6
n
6
PRO
6
C
SER
7
n
7
SER
7
C
ILE
8
n
8
ILE
8
C
software_defined_assembly
PQS
3
trimeric
4630
-30.1
24090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
46
A
N
GLU
46
A
O
ARG
35
A
O
ARG
35
A
N
PHE
36
A
N
PHE
36
A
O
ALA
24
A
O
ALA
24
A
N
TYR
27
A
N
TYR
27
A
O
ARG
6
A
O
ARG
6
A
N
ALA
11
A
N
ALA
11
A
O
TRP
95
A
O
TRP
95
A
O
ASP
102
A
O
ASP
102
A
N
LEU
110
A
N
LEU
110
A
N
TYR
118
A
N
TYR
118
A
O
LYS
121
A
O
LYS
121
A
N
ALA
125
A
N
ALA
125
A
O
THR
134
A
O
THR
134
A
N
HIS
192
A
N
HIS
192
A
O
THR
200
A
O
THR
200
A
N
PHE
208
A
N
PHE
208
A
O
PHE
241
A
O
PHE
241
A
N
GLN
242
A
N
GLN
242
A
O
ARG
234
A
O
ARG
234
A
N
GLU
222
A
N
GLU
222
A
O
ARG
219
A
O
ARG
219
A
N
GLN
218
A
N
GLN
218
A
O
THR
258
A
O
THR
258
A
N
VAL
261
A
N
VAL
261
A
O
LEU
270
A
O
LEU
270
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
PHE
30
B
N
PHE
30
B
O
PHE
62
B
O
PHE
62
B
N
TYR
67
B
N
TYR
67
B
O
GLU
50
B
O
GLU
50
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
PHE
30
B
N
PHE
30
B
O
PHE
62
B
O
PHE
62
B
N
TYR
63
B
N
TYR
63
B
O
SER
55
B
O
SER
55
B
N
GLU
44
B
N
GLU
44
B
O
LYS
41
B
O
LYS
41
B
N
LEU
40
B
N
LEU
40
B
O
ALA
79
B
O
ALA
79
B
N
VAL
82
B
N
VAL
82
B
O
LYS
91
B
O
LYS
91
1
A
PRO
15
-45.48
102.72
1
A
ARG
17
-95.44
31.32
1
A
ASP
29
62.87
-144.41
1
A
SER
38
-55.62
-9.99
1
A
SER
42
71.59
77.82
1
A
ASP
61
-64.01
-72.66
1
A
PRO
105
-60.12
69.13
1
A
ASP
106
178.47
-25.75
1
A
ASN
114
179.09
111.42
1
A
TYR
123
-95.26
-78.16
1
A
TYR
159
-75.74
-72.37
1
A
LEU
160
-38.74
-36.54
1
A
GLU
177
-30.09
-31.17
1
A
HIS
188
-179.80
148.72
1
A
VAL
194
-150.75
-46.76
1
A
ARG
239
108.70
-16.88
1
A
LYS
243
-170.71
149.21
1
A
GLU
253
-65.78
1.20
1
B
ASN
21
-168.25
-155.69
1
B
ASN
42
71.50
42.18
1
B
TRP
60
73.28
-7.15
0.253
0.013
0.194
0.194
3.00
25.00
354
7748
4.6
77.9
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
HLA B53
3.00
25.00
0
3154
0
0
3154
0.007
1.4
24.9
0.95
0.278
0.046
0.272
3.19
37
964
6
3.7
61.7
3.000
25.000
1E28
38887
0.000
0.12000
1
11.8000
3.200
83.0
0.24900
3.00
3.11
3.900
1
64.5
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN, BETA-2 MICROGLOBULIN LIGHT CHAIN, PEPTIDE
Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM2(TAFTIPSI)
1
N
N
2
N
N
3
N
N
A
PRO
50
A
PRO
50
HELX_P
A
GLU
55
A
GLU
55
5
1
6
A
GLY
56
A
GLY
56
HELX_P
A
ASN
86
A
ASN
86
1
2
31
A
ASP
137
A
ASP
137
HELX_P
A
ALA
150
A
ALA
150
1
3
14
A
ARG
151
A
ARG
151
HELX_P
A
GLY
162
A
GLY
162
1
4
12
A
GLY
162
A
GLY
162
HELX_P
A
GLY
175
A
GLY
175
1
5
14
A
GLY
175
A
GLY
175
HELX_P
A
GLN
180
A
GLN
180
1
6
6
A
THR
225
A
THR
225
HELX_P
A
THR
228
A
THR
228
5
7
4
A
GLY
252
A
GLY
252
HELX_P
A
GLN
255
A
GLN
255
5
8
4
disulf
2.042
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.041
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.037
B
CYS
25
B
SG
CYS
25
1_555
B
CYS
80
B
SG
CYS
80
1_555
HLA B51
HLA B51, HIV, MHC CLASS I, HISTOCOMPATIBILITY COMPLEX
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
-0.04
B
HIS
31
B
HIS
31
1
B
PRO
32
B
PRO
32
0.64
1B49_HUMAN
UNP
1
P18464
B2MG_HUMAN
UNP
2
P01884
POL_HV1Z2
UNP
3
P12499
25
300
1E28
1
276
P18464
A
1
1
276
21
119
1E28
1
99
P01884
B
2
1
99
282
289
1E28
1
8
P12499
C
3
1
8
1
ALA
conflict
PRO
49
1E28
A
P18464
UNP
49
49
8
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
THR
31
A
THR
31
A
ASP
37
A
ASP
37
A
ARG
21
A
ARG
21
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
MET
12
A
MET
12
A
THR
94
A
THR
94
A
VAL
103
A
VAL
103
A
LEU
109
A
LEU
109
A
TYR
118
A
TYR
118
A
LYS
121
A
LYS
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
GLU
198
A
GLU
198
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
PRO
250
A
PRO
250
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
GLU
222
A
GLU
222
A
ASP
223
A
ASP
223
A
THR
214
A
THR
214
A
ARG
219
A
ARG
219
A
TYR
257
A
TYR
257
A
GLN
262
A
GLN
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
B
LYS
6
B
LYS
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
62
B
PHE
62
B
PHE
70
B
PHE
70
B
GLU
50
B
GLU
50
B
HIS
51
B
HIS
51
B
LYS
6
B
LYS
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
62
B
PHE
62
B
PHE
70
B
PHE
70
B
SER
55
B
SER
55
B
PHE
56
B
PHE
56
B
GLU
44
B
GLU
44
B
ARG
45
B
ARG
45
B
GLU
36
B
GLU
36
B
LYS
41
B
LYS
41
B
TYR
78
B
TYR
78
B
ASN
83
B
ASN
83
B
LYS
91
B
LYS
91
B
LYS
94
B
LYS
94
19
P 21 21 21