0.009891 0.000000 0.000000 0.000000 0.009891 0.000000 0.000000 0.000000 0.020325 0.00000 0.00000 0.00000 Ostermann, N. Schlichting, I. Brundiers, R. Konrad, M. Reinstein, J. Veit, T. Goody, R.S. Lavie, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 101.100 101.100 49.200 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C10 H15 N2 O8 P 322.208 THYMIDINE-5'-PHOSPHATE non-polymer C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C10 H16 N2 O11 P2 402.188 THYMIDINE-5'-DIPHOSPHATE non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 8 629 10.1016/S0969-2126(00)00149-0 10873853 Insights Into the Phosphoryltransfer Mechanism of Human Thymidylate Kinase Gained from Crystal Structures of Enzyme Complexes Along the Reaction Coordinate 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRROR IMAGE PLATE MAR scanner 345 mm plate NO SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE ENRAF-NONIUS FR591 24052.533 THYMIDYLATE KINASE 2.7.4.9 YES 1 man polymer 322.208 THYMIDINE-5'-PHOSPHATE 1 syn non-polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 402.188 THYMIDINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 269 nat water TMPK no no GSHMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQ ERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGELWK GSHMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQ ERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGELWK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 562 ESCHERICHIA COLI 1 2.61 52.94 VAPOR DIFFUSION 8.00 VAPOR DIFFUSION AT 293 K MIXING 2 MICROLITERS OF A SOLUTION CONTAINING THE ENZYME, NUCLEOTIDES, AND 50 MM MGCL2 WITH 2 MICROLITERS OF A SOLUTION CONTAINING 21% PEG 3350, 100 MM TRIS HCL PH 8.0 AND 50 MICROLITERS OF DEAD SEA WATER. 293 diffrn_source database_PDB_rev database_PDB_rev_record exptl_crystal_grow repository Initial release Version format compliance Version format compliance Data collection Data collection Experimental preparation 1 0 2001-05-17 1 1 2011-05-08 1 2 2011-07-13 1 3 2017-06-28 1 4 2019-03-06 _diffrn_source.type _exptl_crystal_grow.method _exptl_crystal_grow.temp HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION HUMAN THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR AZTP5A HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND APPNP CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +ADP WILD TYPE HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE,A MAGNESIUM-ION AND ALF3 MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH DTMP AND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH TP5A AND A MAGNESIUM-ION CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH D4TMP +APPNHP CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND APPNHP CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH NH2TMPAND APPNHP HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE BUTENYL PHOSPHONATE MONOPHOSPHATE AND ADP MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH AZTMP AND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH FLTMPAND APPNHP MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND ADP CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE KINASE WITH DDTMPAND ADP MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND APPNP PDBE Y PDBE 2000-05-22 REL 1 A O HOH 2010 6.31 1 A O HOH 2025 6.94 TMP THYMIDINE-5'-PHOSPHATE ADP ADENOSINE-5'-DIPHOSPHATE TYD THYMIDINE-5'-DIPHOSPHATE MG MAGNESIUM ION HOH water ENGINEERED RESIDUE IN CHAIN A, ARG 200 TO ALA GLY, SER, HIS INSERTED AT THE N-TERMINUS THE ACTIVE SITE CONTAINS A MIXTURE OF NUCLEOTIDES, ADP TMP AND ADP + TDP. CORRESPONDINGLY, THE P-LOOP HAS TWO CONFORMATIONS. SAMPLE COMTAINS SER183, ILE184, ASP190, AND A ILE191 (CONFIRMED BY THE DNA SEQUENCE AND ELECTRON DENSITY OF SIDE-CHAINS). POSSIBLE ERROR IN SWISSPROT ENTRY. TMP 301 2 TMP TMP 301 A ADP 302 3 ADP ADP 302 A TYD 304 4 TYD TYD 304 A MG 401 5 MG MG 401 A MG 402 5 MG MG 402 A HOH 2001 6 HOH HOH 2001 A HOH 2002 6 HOH HOH 2002 A HOH 2003 6 HOH HOH 2003 A HOH 2004 6 HOH HOH 2004 A HOH 2005 6 HOH HOH 2005 A HOH 2006 6 HOH HOH 2006 A HOH 2007 6 HOH HOH 2007 A HOH 2008 6 HOH HOH 2008 A HOH 2009 6 HOH HOH 2009 A HOH 2010 6 HOH HOH 2010 A HOH 2011 6 HOH HOH 2011 A HOH 2012 6 HOH HOH 2012 A HOH 2013 6 HOH HOH 2013 A HOH 2014 6 HOH HOH 2014 A HOH 2015 6 HOH HOH 2015 A HOH 2016 6 HOH HOH 2016 A HOH 2017 6 HOH HOH 2017 A HOH 2018 6 HOH HOH 2018 A HOH 2019 6 HOH HOH 2019 A HOH 2020 6 HOH HOH 2020 A HOH 2021 6 HOH HOH 2021 A HOH 2022 6 HOH HOH 2022 A HOH 2023 6 HOH HOH 2023 A HOH 2024 6 HOH HOH 2024 A HOH 2025 6 HOH HOH 2025 A HOH 2026 6 HOH HOH 2026 A HOH 2027 6 HOH HOH 2027 A HOH 2028 6 HOH HOH 2028 A HOH 2029 6 HOH HOH 2029 A HOH 2030 6 HOH HOH 2030 A HOH 2031 6 HOH HOH 2031 A HOH 2032 6 HOH HOH 2032 A HOH 2033 6 HOH HOH 2033 A HOH 2034 6 HOH HOH 2034 A HOH 2035 6 HOH HOH 2035 A HOH 2036 6 HOH HOH 2036 A HOH 2037 6 HOH HOH 2037 A HOH 2038 6 HOH HOH 2038 A HOH 2039 6 HOH HOH 2039 A HOH 2040 6 HOH HOH 2040 A HOH 2041 6 HOH HOH 2041 A HOH 2042 6 HOH HOH 2042 A HOH 2043 6 HOH HOH 2043 A HOH 2044 6 HOH HOH 2044 A HOH 2045 6 HOH HOH 2045 A HOH 2046 6 HOH HOH 2046 A HOH 2047 6 HOH HOH 2047 A HOH 2048 6 HOH HOH 2048 A HOH 2049 6 HOH HOH 2049 A HOH 2050 6 HOH HOH 2050 A HOH 2051 6 HOH HOH 2051 A HOH 2052 6 HOH HOH 2052 A HOH 2053 6 HOH HOH 2053 A HOH 2054 6 HOH HOH 2054 A HOH 2055 6 HOH HOH 2055 A HOH 2056 6 HOH HOH 2056 A HOH 2057 6 HOH HOH 2057 A HOH 2058 6 HOH HOH 2058 A HOH 2059 6 HOH HOH 2059 A HOH 2060 6 HOH HOH 2060 A HOH 2061 6 HOH HOH 2061 A HOH 2062 6 HOH HOH 2062 A HOH 2063 6 HOH HOH 2063 A HOH 2064 6 HOH HOH 2064 A HOH 2065 6 HOH HOH 2065 A HOH 2066 6 HOH HOH 2066 A HOH 2067 6 HOH HOH 2067 A HOH 2068 6 HOH HOH 2068 A HOH 2069 6 HOH HOH 2069 A HOH 2070 6 HOH HOH 2070 A HOH 2071 6 HOH HOH 2071 A HOH 2072 6 HOH HOH 2072 A HOH 2073 6 HOH HOH 2073 A HOH 2074 6 HOH HOH 2074 A HOH 2075 6 HOH HOH 2075 A HOH 2076 6 HOH HOH 2076 A HOH 2077 6 HOH HOH 2077 A HOH 2078 6 HOH HOH 2078 A HOH 2079 6 HOH HOH 2079 A HOH 2080 6 HOH HOH 2080 A HOH 2081 6 HOH HOH 2081 A HOH 2082 6 HOH HOH 2082 A HOH 2083 6 HOH HOH 2083 A HOH 2084 6 HOH HOH 2084 A HOH 2085 6 HOH HOH 2085 A HOH 2086 6 HOH HOH 2086 A HOH 2087 6 HOH HOH 2087 A HOH 2088 6 HOH HOH 2088 A HOH 2089 6 HOH HOH 2089 A HOH 2090 6 HOH HOH 2090 A HOH 2091 6 HOH HOH 2091 A HOH 2092 6 HOH HOH 2092 A HOH 2093 6 HOH HOH 2093 A HOH 2094 6 HOH HOH 2094 A HOH 2095 6 HOH HOH 2095 A HOH 2096 6 HOH HOH 2096 A HOH 2097 6 HOH HOH 2097 A HOH 2098 6 HOH HOH 2098 A HOH 2099 6 HOH HOH 2099 A HOH 2100 6 HOH HOH 2100 A HOH 2101 6 HOH HOH 2101 A HOH 2102 6 HOH HOH 2102 A HOH 2103 6 HOH HOH 2103 A HOH 2104 6 HOH HOH 2104 A HOH 2105 6 HOH HOH 2105 A HOH 2106 6 HOH HOH 2106 A HOH 2107 6 HOH HOH 2107 A HOH 2108 6 HOH HOH 2108 A HOH 2109 6 HOH HOH 2109 A HOH 2110 6 HOH HOH 2110 A HOH 2111 6 HOH HOH 2111 A HOH 2112 6 HOH HOH 2112 A HOH 2113 6 HOH HOH 2113 A HOH 2114 6 HOH HOH 2114 A HOH 2115 6 HOH HOH 2115 A HOH 2116 6 HOH HOH 2116 A HOH 2117 6 HOH HOH 2117 A HOH 2118 6 HOH HOH 2118 A HOH 2119 6 HOH HOH 2119 A HOH 2120 6 HOH HOH 2120 A HOH 2121 6 HOH HOH 2121 A HOH 2122 6 HOH HOH 2122 A HOH 2123 6 HOH HOH 2123 A HOH 2124 6 HOH HOH 2124 A HOH 2125 6 HOH HOH 2125 A HOH 2126 6 HOH HOH 2126 A HOH 2127 6 HOH HOH 2127 A HOH 2128 6 HOH HOH 2128 A HOH 2129 6 HOH HOH 2129 A HOH 2130 6 HOH HOH 2130 A HOH 2131 6 HOH HOH 2131 A HOH 2132 6 HOH HOH 2132 A HOH 2133 6 HOH HOH 2133 A HOH 2134 6 HOH HOH 2134 A HOH 2135 6 HOH HOH 2135 A HOH 2136 6 HOH HOH 2136 A HOH 2137 6 HOH HOH 2137 A HOH 2138 6 HOH HOH 2138 A HOH 2139 6 HOH HOH 2139 A HOH 2140 6 HOH HOH 2140 A HOH 2141 6 HOH HOH 2141 A HOH 2142 6 HOH HOH 2142 A HOH 2143 6 HOH HOH 2143 A HOH 2144 6 HOH HOH 2144 A HOH 2145 6 HOH HOH 2145 A HOH 2146 6 HOH HOH 2146 A HOH 2147 6 HOH HOH 2147 A HOH 2148 6 HOH HOH 2148 A HOH 2149 6 HOH HOH 2149 A HOH 2150 6 HOH HOH 2150 A HOH 2151 6 HOH HOH 2151 A HOH 2152 6 HOH HOH 2152 A HOH 2153 6 HOH HOH 2153 A HOH 2154 6 HOH HOH 2154 A HOH 2155 6 HOH HOH 2155 A HOH 2156 6 HOH HOH 2156 A HOH 2157 6 HOH HOH 2157 A HOH 2158 6 HOH HOH 2158 A HOH 2159 6 HOH HOH 2159 A HOH 2160 6 HOH HOH 2160 A HOH 2161 6 HOH HOH 2161 A HOH 2162 6 HOH HOH 2162 A HOH 2163 6 HOH HOH 2163 A HOH 2164 6 HOH HOH 2164 A HOH 2165 6 HOH HOH 2165 A HOH 2166 6 HOH HOH 2166 A HOH 2167 6 HOH HOH 2167 A HOH 2168 6 HOH HOH 2168 A HOH 2169 6 HOH HOH 2169 A HOH 2170 6 HOH HOH 2170 A HOH 2171 6 HOH HOH 2171 A HOH 2172 6 HOH HOH 2172 A HOH 2173 6 HOH HOH 2173 A HOH 2174 6 HOH HOH 2174 A HOH 2175 6 HOH HOH 2175 A HOH 2176 6 HOH HOH 2176 A HOH 2177 6 HOH HOH 2177 A HOH 2178 6 HOH HOH 2178 A HOH 2179 6 HOH HOH 2179 A HOH 2180 6 HOH HOH 2180 A HOH 2181 6 HOH HOH 2181 A HOH 2182 6 HOH HOH 2182 A HOH 2183 6 HOH HOH 2183 A HOH 2184 6 HOH HOH 2184 A HOH 2185 6 HOH HOH 2185 A HOH 2186 6 HOH HOH 2186 A HOH 2187 6 HOH HOH 2187 A HOH 2188 6 HOH HOH 2188 A HOH 2189 6 HOH HOH 2189 A HOH 2190 6 HOH HOH 2190 A HOH 2191 6 HOH HOH 2191 A HOH 2192 6 HOH HOH 2192 A HOH 2193 6 HOH HOH 2193 A HOH 2194 6 HOH HOH 2194 A HOH 2195 6 HOH HOH 2195 A HOH 2196 6 HOH HOH 2196 A HOH 2197 6 HOH HOH 2197 A HOH 2198 6 HOH HOH 2198 A HOH 2199 6 HOH HOH 2199 A HOH 2200 6 HOH HOH 2200 A HOH 2201 6 HOH HOH 2201 A HOH 2202 6 HOH HOH 2202 A HOH 2203 6 HOH HOH 2203 A HOH 2204 6 HOH HOH 2204 A HOH 2205 6 HOH HOH 2205 A HOH 2206 6 HOH HOH 2206 A HOH 2207 6 HOH HOH 2207 A HOH 2208 6 HOH HOH 2208 A HOH 2209 6 HOH HOH 2209 A HOH 2210 6 HOH HOH 2210 A HOH 2211 6 HOH HOH 2211 A HOH 2212 6 HOH HOH 2212 A HOH 2213 6 HOH HOH 2213 A HOH 2214 6 HOH HOH 2214 A HOH 2215 6 HOH HOH 2215 A HOH 2216 6 HOH HOH 2216 A HOH 2217 6 HOH HOH 2217 A HOH 2218 6 HOH HOH 2218 A HOH 2219 6 HOH HOH 2219 A HOH 2220 6 HOH HOH 2220 A HOH 2221 6 HOH HOH 2221 A HOH 2222 6 HOH HOH 2222 A HOH 2223 6 HOH HOH 2223 A HOH 2224 6 HOH HOH 2224 A HOH 2225 6 HOH HOH 2225 A HOH 2226 6 HOH HOH 2226 A HOH 2227 6 HOH HOH 2227 A HOH 2228 6 HOH HOH 2228 A HOH 2229 6 HOH HOH 2229 A HOH 2230 6 HOH HOH 2230 A HOH 2231 6 HOH HOH 2231 A HOH 2232 6 HOH HOH 2232 A HOH 2233 6 HOH HOH 2233 A HOH 2234 6 HOH HOH 2234 A HOH 2235 6 HOH HOH 2235 A HOH 2236 6 HOH HOH 2236 A HOH 2237 6 HOH HOH 2237 A HOH 2238 6 HOH HOH 2238 A HOH 2239 6 HOH HOH 2239 A HOH 2240 6 HOH HOH 2240 A HOH 2241 6 HOH HOH 2241 A HOH 2242 6 HOH HOH 2242 A HOH 2243 6 HOH HOH 2243 A HOH 2244 6 HOH HOH 2244 A HOH 2245 6 HOH HOH 2245 A HOH 2246 6 HOH HOH 2246 A HOH 2247 6 HOH HOH 2247 A HOH 2248 6 HOH HOH 2248 A HOH 2249 6 HOH HOH 2249 A HOH 2250 6 HOH HOH 2250 A HOH 2251 6 HOH HOH 2251 A HOH 2252 6 HOH HOH 2252 A HOH 2253 6 HOH HOH 2253 A HOH 2254 6 HOH HOH 2254 A HOH 2255 6 HOH HOH 2255 A HOH 2256 6 HOH HOH 2256 A HOH 2257 6 HOH HOH 2257 A HOH 2258 6 HOH HOH 2258 A HOH 2259 6 HOH HOH 2259 A HOH 2260 6 HOH HOH 2260 A HOH 2261 6 HOH HOH 2261 A HOH 2262 6 HOH HOH 2262 A HOH 2263 6 HOH HOH 2263 A HOH 2264 6 HOH HOH 2264 A HOH 2265 6 HOH HOH 2265 A HOH 2266 6 HOH HOH 2266 A HOH 2267 6 HOH HOH 2267 A HOH 2268 6 HOH HOH 2268 A HOH 2269 6 HOH HOH 2269 A n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A ARG 4 n 7 ARG 4 A ARG 5 n 8 ARG 5 A GLY 6 n 9 GLY 6 A ALA 7 n 10 ALA 7 A LEU 8 n 11 LEU 8 A ILE 9 n 12 ILE 9 A VAL 10 n 13 VAL 10 A LEU 11 n 14 LEU 11 A GLU 12 n 15 GLU 12 A GLY 13 n 16 GLY 13 A VAL 14 n 17 VAL 14 A ASP 15 n 18 ASP 15 A ARG 16 n 19 ARG 16 A ALA 17 n 20 ALA 17 A GLY 18 n 21 GLY 18 A LYS 19 n 22 LYS 19 A SER 20 n 23 SER 20 A THR 21 n 24 THR 21 A GLN 22 n 25 GLN 22 A SER 23 n 26 SER 23 A ARG 24 n 27 ARG 24 A LYS 25 n 28 LYS 25 A LEU 26 n 29 LEU 26 A VAL 27 n 30 VAL 27 A GLU 28 n 31 GLU 28 A ALA 29 n 32 ALA 29 A LEU 30 n 33 LEU 30 A CYS 31 n 34 CYS 31 A ALA 32 n 35 ALA 32 A ALA 33 n 36 ALA 33 A GLY 34 n 37 GLY 34 A HIS 35 n 38 HIS 35 A ARG 36 n 39 ARG 36 A ALA 37 n 40 ALA 37 A GLU 38 n 41 GLU 38 A LEU 39 n 42 LEU 39 A LEU 40 n 43 LEU 40 A ARG 41 n 44 ARG 41 A PHE 42 n 45 PHE 42 A PRO 43 n 46 PRO 43 A GLU 44 n 47 GLU 44 A ARG 45 n 48 ARG 45 A SER 46 n 49 SER 46 A THR 47 n 50 THR 47 A GLU 48 n 51 GLU 48 A ILE 49 n 52 ILE 49 A GLY 50 n 53 GLY 50 A LYS 51 n 54 LYS 51 A LEU 52 n 55 LEU 52 A LEU 53 n 56 LEU 53 A SER 54 n 57 SER 54 A SER 55 n 58 SER 55 A TYR 56 n 59 TYR 56 A LEU 57 n 60 LEU 57 A GLN 58 n 61 GLN 58 A LYS 59 n 62 LYS 59 A LYS 60 n 63 LYS 60 A SER 61 n 64 SER 61 A ASP 62 n 65 ASP 62 A VAL 63 n 66 VAL 63 A GLU 64 n 67 GLU 64 A ASP 65 n 68 ASP 65 A HIS 66 n 69 HIS 66 A SER 67 n 70 SER 67 A VAL 68 n 71 VAL 68 A HIS 69 n 72 HIS 69 A LEU 70 n 73 LEU 70 A LEU 71 n 74 LEU 71 A PHE 72 n 75 PHE 72 A SER 73 n 76 SER 73 A ALA 74 n 77 ALA 74 A ASN 75 n 78 ASN 75 A ARG 76 n 79 ARG 76 A TRP 77 n 80 TRP 77 A GLU 78 n 81 GLU 78 A GLN 79 n 82 GLN 79 A VAL 80 n 83 VAL 80 A PRO 81 n 84 PRO 81 A LEU 82 n 85 LEU 82 A ILE 83 n 86 ILE 83 A LYS 84 n 87 LYS 84 A GLU 85 n 88 GLU 85 A LYS 86 n 89 LYS 86 A LEU 87 n 90 LEU 87 A SER 88 n 91 SER 88 A GLN 89 n 92 GLN 89 A GLY 90 n 93 GLY 90 A VAL 91 n 94 VAL 91 A THR 92 n 95 THR 92 A LEU 93 n 96 LEU 93 A VAL 94 n 97 VAL 94 A VAL 95 n 98 VAL 95 A ASP 96 n 99 ASP 96 A ARG 97 n 100 ARG 97 A TYR 98 n 101 TYR 98 A ALA 99 n 102 ALA 99 A PHE 100 n 103 PHE 100 A SER 101 n 104 SER 101 A GLY 102 n 105 GLY 102 A VAL 103 n 106 VAL 103 A ALA 104 n 107 ALA 104 A PHE 105 n 108 PHE 105 A THR 106 n 109 THR 106 A GLY 107 n 110 GLY 107 A ALA 108 n 111 ALA 108 A LYS 109 n 112 LYS 109 A GLU 110 n 113 GLU 110 A ASN 111 n 114 ASN 111 A PHE 112 n 115 PHE 112 A SER 113 n 116 SER 113 A LEU 114 n 117 LEU 114 A ASP 115 n 118 ASP 115 A TRP 116 n 119 TRP 116 A CYS 117 n 120 CYS 117 A LYS 118 n 121 LYS 118 A GLN 119 n 122 GLN 119 A PRO 120 n 123 PRO 120 A ASP 121 n 124 ASP 121 A VAL 122 n 125 VAL 122 A GLY 123 n 126 GLY 123 A LEU 124 n 127 LEU 124 A PRO 125 n 128 PRO 125 A LYS 126 n 129 LYS 126 A PRO 127 n 130 PRO 127 A ASP 128 n 131 ASP 128 A LEU 129 n 132 LEU 129 A VAL 130 n 133 VAL 130 A LEU 131 n 134 LEU 131 A PHE 132 n 135 PHE 132 A LEU 133 n 136 LEU 133 A GLN 134 n 137 GLN 134 A LEU 135 n 138 LEU 135 A GLN 136 n 139 GLN 136 A LEU 137 n 140 LEU 137 A ALA 138 n 141 ALA 138 A ASP 139 n 142 ASP 139 A ALA 140 n 143 ALA 140 A ALA 141 n 144 ALA 141 A LYS 142 n 145 LYS 142 A ARG 143 n 146 ARG 143 A GLY 144 n 147 GLY 144 A n 148 145 A n 149 146 A n 150 147 A n 151 148 A GLU 149 n 152 GLU 149 A ARG 150 n 153 ARG 150 A TYR 151 n 154 TYR 151 A GLU 152 n 155 GLU 152 A ASN 153 n 156 ASN 153 A GLY 154 n 157 GLY 154 A ALA 155 n 158 ALA 155 A PHE 156 n 159 PHE 156 A GLN 157 n 160 GLN 157 A GLU 158 n 161 GLU 158 A ARG 159 n 162 ARG 159 A ALA 160 n 163 ALA 160 A LEU 161 n 164 LEU 161 A ARG 162 n 165 ARG 162 A CYS 163 n 166 CYS 163 A PHE 164 n 167 PHE 164 A HIS 165 n 168 HIS 165 A GLN 166 n 169 GLN 166 A LEU 167 n 170 LEU 167 A MET 168 n 171 MET 168 A LYS 169 n 172 LYS 169 A ASP 170 n 173 ASP 170 A THR 171 n 174 THR 171 A THR 172 n 175 THR 172 A LEU 173 n 176 LEU 173 A ASN 174 n 177 ASN 174 A TRP 175 n 178 TRP 175 A LYS 176 n 179 LYS 176 A MET 177 n 180 MET 177 A VAL 178 n 181 VAL 178 A ASP 179 n 182 ASP 179 A ALA 180 n 183 ALA 180 A SER 181 n 184 SER 181 A LYS 182 n 185 LYS 182 A SER 183 n 186 SER 183 A ILE 184 n 187 ILE 184 A GLU 185 n 188 GLU 185 A ALA 186 n 189 ALA 186 A VAL 187 n 190 VAL 187 A HIS 188 n 191 HIS 188 A GLU 189 n 192 GLU 189 A ASP 190 n 193 ASP 190 A ILE 191 n 194 ILE 191 A ARG 192 n 195 ARG 192 A VAL 193 n 196 VAL 193 A LEU 194 n 197 LEU 194 A SER 195 n 198 SER 195 A GLU 196 n 199 GLU 196 A ASP 197 n 200 ASP 197 A ALA 198 n 201 ALA 198 A ILE 199 n 202 ILE 199 A ALA 200 n 203 ALA 200 A THR 201 n 204 THR 201 A ALA 202 n 205 ALA 202 A THR 203 n 206 THR 203 A GLU 204 n 207 GLU 204 A LYS 205 n 208 LYS 205 A PRO 206 n 209 PRO 206 A LEU 207 n 210 LEU 207 A GLY 208 n 211 GLY 208 A GLU 209 n 212 GLU 209 A LEU 210 n 213 LEU 210 A TRP 211 n 214 TRP 211 A LYS 212 n 215 LYS 212 A author_and_software_defined_assembly PISA 2 dimeric 6240 -89.6 16510 A SER 20 A OG SER 23 1_555 A MG 401 E MG MG 1_555 A ADP 302 C O2B ADP 1_555 94.3 A SER 20 A OG SER 23 1_555 A MG 401 E MG MG 1_555 A HOH 2124 G O HOH 1_555 82.9 A ADP 302 C O2B ADP 1_555 A MG 401 E MG MG 1_555 A HOH 2124 G O HOH 1_555 97.5 A SER 20 A OG SER 23 1_555 A MG 401 E MG MG 1_555 A HOH 2252 G O HOH 1_555 173.5 A ADP 302 C O2B ADP 1_555 A MG 401 E MG MG 1_555 A HOH 2252 G O HOH 1_555 92.0 A HOH 2124 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2252 G O HOH 1_555 94.5 A SER 20 A OG SER 23 1_555 A MG 401 E MG MG 1_555 A HOH 2259 G O HOH 1_555 92.0 A ADP 302 C O2B ADP 1_555 A MG 401 E MG MG 1_555 A HOH 2259 G O HOH 1_555 87.3 A HOH 2124 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2259 G O HOH 1_555 173.2 A HOH 2252 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2259 G O HOH 1_555 90.2 A SER 20 A OG SER 23 1_555 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 85.2 A ADP 302 C O2B ADP 1_555 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 178.1 A HOH 2124 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 84.3 A HOH 2252 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 88.6 A HOH 2259 G O HOH 1_555 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 90.9 A HOH 2061 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 8_665 84.8 A HOH 2061 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 8_665 86.7 A HOH 2144 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 8_665 83.3 A HOH 2061 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2061 G O HOH 8_665 92.2 A HOH 2144 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2061 G O HOH 8_665 168.6 A HOH 2142 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2061 G O HOH 8_665 85.6 A HOH 2061 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 1_555 174.2 A HOH 2144 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 1_555 90.2 A HOH 2142 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 1_555 95.6 A HOH 2061 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 1_555 93.3 A HOH 2061 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 85.8 A HOH 2144 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 95.6 A HOH 2142 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 172.5 A HOH 2061 G O HOH 8_665 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 95.1 A HOH 2144 G O HOH 1_555 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 91.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 101.1000000000 101.1000000000 24.6000000000 A O LYS 176 A O LYS 179 A N VAL 130 A N VAL 133 A O LEU 129 A O LEU 132 A N VAL 10 A N VAL 13 A O ILE 9 A O ILE 12 A N LEU 93 A N LEU 96 A O THR 92 A O THR 95 A N GLU 38 A N GLU 41 1 A MG 402 F MG 1 A HOH 2183 G HOH 1 A CG LYS 142 A CG LYS 145 1 Y 1 A CD LYS 142 A CD LYS 145 1 Y 1 A CE LYS 142 A CE LYS 145 1 Y 1 A NZ LYS 142 A NZ LYS 145 1 Y 1 A CG GLU 149 A CG GLU 152 1 Y 1 A CD GLU 149 A CD GLU 152 1 Y 1 A OE1 GLU 149 A OE1 GLU 152 1 Y 1 A OE2 GLU 149 A OE2 GLU 152 1 Y 1 A CG GLU 204 A CG GLU 207 1 Y 1 A CD GLU 204 A CD GLU 207 1 Y 1 A OE1 GLU 204 A OE1 GLU 207 1 Y 1 A OE2 GLU 204 A OE2 GLU 207 1 Y 1 A CG LYS 205 A CG LYS 208 1 Y 1 A CD LYS 205 A CD LYS 208 1 Y 1 A CE LYS 205 A CE LYS 208 1 Y 1 A NZ LYS 205 A NZ LYS 208 1 Y 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A ALA 2 A ALA 5 1 Y 1 A ALA 3 A ALA 6 1 Y 1 A ALA 145 A ALA 148 1 Y 1 A PHE 146 A PHE 149 1 Y 1 A GLY 147 A GLY 150 1 Y 1 A HIS 148 A HIS 151 1 Y 1 A A N O ARG HOH 4 2002 2.19 1 9.48 1.40 123.60 133.08 A A A CD NE CZ ARG ARG ARG 4 4 4 N 1 11.77 1.40 123.60 135.37 A A A CD NE CZ ARG ARG ARG 16 16 16 B B B N 1 -4.69 0.50 120.30 115.61 A A A NE CZ NH2 ARG ARG ARG 16 16 16 A A A N 1 9.23 0.90 118.30 127.53 A A A CB CG OD1 ASP ASP ASP 96 96 96 N 1 -6.86 0.90 118.30 111.44 A A A CB CG OD2 ASP ASP ASP 96 96 96 N 1 A ARG 97 76.50 144.60 1 A TYR 98 -149.42 -146.72 1 A TYR 151 80.46 0.46 1 A ASP 170 -67.73 98.13 0.240 0.191 1.70 50.5 2859 28445 0.1 99.4 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 1.70 50.5 269 1952 75 0 1608 0.012 1.3 1.700 50.500 1E2G 28445 0.05200 1 19.0000 4.900 99.4 1.70 1.80 3.700 0.29600 1 4.50 99.6 refinement REFMAC data reduction XDS data scaling XSCALE phasing AMoRE THYMIDYLATE KINASE (E.C.2.7.4.9) Human thymidylate kinase complexed with ADP, TDP and a magnesium-ion 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N A GLY 18 A GLY 21 HELX_P A ALA 33 A ALA 36 1 1 16 A THR 47 A THR 50 HELX_P A GLN 58 A GLN 61 1 2 12 A GLU 64 A GLU 67 HELX_P A GLU 78 A GLU 81 1 3 15 A GLN 79 A GLN 82 HELX_P A GLN 89 A GLN 92 1 4 11 A TYR 98 A TYR 101 HELX_P A ALA 108 A ALA 111 1 5 11 A SER 113 A SER 116 HELX_P A GLN 119 A GLN 122 1 6 7 A PRO 120 A PRO 123 HELX_P A VAL 122 A VAL 125 5 7 3 A GLN 136 A GLN 139 HELX_P A ALA 141 A ALA 144 1 8 6 A ASN 153 A ASN 156 HELX_P A MET 168 A MET 171 1 9 16 A SER 183 A SER 186 HELX_P A ALA 202 A ALA 205 1 10 20 A THR 203 A THR 206 HELX_P A LYS 205 A LYS 208 5 11 3 metalc 2.060 A MG 401 E MG MG 1_555 A SER 20 A OG SER 23 1_555 metalc 2.027 A MG 401 E MG MG 1_555 A ADP 302 C O2B ADP 1_555 metalc 2.260 A MG 401 E MG MG 1_555 A HOH 2124 G O HOH 1_555 metalc 2.119 A MG 401 E MG MG 1_555 A HOH 2252 G O HOH 1_555 metalc 2.115 A MG 401 E MG MG 1_555 A HOH 2259 G O HOH 1_555 metalc 2.161 A MG 401 E MG MG 1_555 A HOH 2267 G O HOH 1_555 metalc 2.235 A MG 402 F MG MG 1_555 A HOH 2061 G O HOH 1_555 metalc 2.184 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 8_665 metalc 2.256 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 8_665 metalc 2.083 A MG 402 F MG MG 1_555 A HOH 2061 G O HOH 8_665 metalc 2.016 A MG 402 F MG MG 1_555 A HOH 2144 G O HOH 1_555 metalc 2.094 A MG 402 F MG MG 1_555 A HOH 2142 G O HOH 1_555 TRANSFERASE TRANSFERASE, P-LOOP A PHE 42 A PHE 45 1 A PRO 43 A PRO 46 -4.66 KTHY_HUMAN UNP 1 P23919 1 212 1E2G 1 212 P23919 A 1 4 215 1 expression tag GLY -2 1E2G A P23919 UNP 1 1 expression tag SER -1 1E2G A P23919 UNP 2 1 expression tag HIS 0 1E2G A P23919 UNP 3 1 ARG engineered mutation ALA 200 1E2G A P23919 UNP 200 203 5 parallel parallel parallel parallel A TRP 175 A TRP 178 A ASP 179 A ASP 182 A LEU 129 A LEU 132 A GLN 134 A GLN 137 A LEU 8 A LEU 11 A GLU 12 A GLU 15 A THR 92 A THR 95 A ASP 96 A ASP 99 A ALA 37 A ALA 40 A ARG 41 A ARG 44 BINDING SITE FOR RESIDUE TMP A 301 Software 16 BINDING SITE FOR RESIDUE ADP A 302 Software 22 BINDING SITE FOR RESIDUE TYD A 304 Software 24 BINDING SITE FOR RESIDUE MG A 401 Software 6 BINDING SITE FOR RESIDUE MG A 402 Software 6 A ASP 15 A ASP 18 16 1_555 A PHE 42 A PHE 45 16 1_555 A LEU 57 A LEU 60 16 1_555 A PHE 72 A PHE 75 16 1_555 A ARG 76 A ARG 79 16 1_555 A ARG 97 A ARG 100 16 1_555 A GLY 102 A GLY 105 16 1_555 A PHE 105 A PHE 108 16 1_555 A TYR 151 A TYR 154 16 1_555 A HOH 2124 G HOH 16 1_555 A HOH 2128 G HOH 16 1_555 A HOH 2249 G HOH 16 1_555 A HOH 2250 G HOH 16 1_555 A HOH 2251 G HOH 16 1_555 A HOH 2252 G HOH 16 1_555 A HOH 2269 G HOH 16 1_555 A ARG 16 A ARG 19 22 1_555 A ALA 17 A ALA 20 22 1_555 A GLY 18 A GLY 21 22 1_555 A LYS 19 A LYS 22 22 1_555 A SER 20 A SER 23 22 1_555 A THR 21 A THR 24 22 1_555 A ARG 143 A ARG 146 22 1_555 A LYS 182 A LYS 185 22 1_555 A SER 183 A SER 186 22 1_555 A ILE 184 A ILE 187 22 1_555 A ARG 192 A ARG 195 22 4_455 A MG 401 E MG 22 1_555 A HOH 2230 G HOH 22 4_455 A HOH 2252 G HOH 22 1_555 A HOH 2254 G HOH 22 1_555 A HOH 2255 G HOH 22 1_555 A HOH 2256 G HOH 22 1_555 A HOH 2257 G HOH 22 1_555 A HOH 2258 G HOH 22 1_555 A HOH 2259 G HOH 22 1_555 A HOH 2260 G HOH 22 1_555 A HOH 2261 G HOH 22 1_555 A ASP 15 A ASP 18 24 1_555 A PHE 42 A PHE 45 24 1_555 A ARG 45 A ARG 48 24 1_555 A LEU 57 A LEU 60 24 1_555 A PHE 72 A PHE 75 24 1_555 A ARG 76 A ARG 79 24 1_555 A ARG 97 A ARG 100 24 1_555 A GLY 102 A GLY 105 24 1_555 A PHE 105 A PHE 108 24 1_555 A TYR 151 A TYR 154 24 1_555 A GLU 152 A GLU 155 24 1_555 A HOH 2068 G HOH 24 1_555 A HOH 2249 G HOH 24 1_555 A HOH 2250 G HOH 24 1_555 A HOH 2251 G HOH 24 1_555 A HOH 2252 G HOH 24 1_555 A HOH 2262 G HOH 24 1_555 A HOH 2263 G HOH 24 1_555 A HOH 2264 G HOH 24 1_555 A HOH 2265 G HOH 24 1_555 A HOH 2266 G HOH 24 1_555 A HOH 2267 G HOH 24 1_555 A HOH 2268 G HOH 24 1_555 A HOH 2269 G HOH 24 1_555 A SER 20 A SER 23 6 1_555 A ADP 302 C ADP 6 1_555 A HOH 2124 G HOH 6 1_555 A HOH 2252 G HOH 6 1_555 A HOH 2259 G HOH 6 1_555 A HOH 2267 G HOH 6 1_555 A HOH 2061 G HOH 6 1_555 A HOH 2061 G HOH 6 8_665 A HOH 2142 G HOH 6 1_555 A HOH 2142 G HOH 6 8_665 A HOH 2144 G HOH 6 1_555 A HOH 2144 G HOH 6 8_665 96 P 43 21 2