0.010672 0.006162 0.000000 0.000000 0.012323 0.000000 0.000000 0.000000 0.013128 0.00000 0.00000 0.00000 Carr, S. Walker, D. James, R. Kleanthous, C. Hemmings, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 93.700 93.700 76.170 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 8 949 10.1016/S0969-2126(00)00186-6 10986462 Inhibition of a Ribosome Inactivating Ribonuclease: The Crystal Structure of the Cytotoxic Domain of Colicin E3 in Complex with its Immunity Protein 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD MAD M x-ray 1 0.9 1.0 0.97 1.0 0.979 1.0 BM14 ESRF 0.9, 0.97, 0.979 SYNCHROTRON ESRF BEAMLINE BM14 9910.762 IMMUNITY PROTEIN 1 man polymer 10812.117 COLICIN E3 RIBONUCLEASE DOMAIN RESIDUES 456-551 1 man polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 171 nat water no no MGLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDY RDGDW MGLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDY RDGDW A polypeptide(L) no no GFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIYEWDSQHGELEGYRASDGQHLGSFDPKTG NQLKGPDPKRNIKKYL GFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIYEWDSQHGELEGYRASDGQHLGSFDPKTG NQLKGPDPKRNIKKYL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 562 ESCHERICHIA COLI 469008 ESCHERICHIA COLI BL21(DE3) sample CO-EXPRESSED WITH A HIS-TAGGED IMMUNITY PROTEIN 562 ESCHERICHIA COLI CYTOPLASM 511693 ESCHERICHIA COLI BL21 1 4.39 72 5.60 0.1 M NA CITRATE PH 5.6, 20% ISOPROPANOL, 10% PEG 4000 repository Initial release Version format compliance Version format compliance 1 0 2001-06-28 1 1 2011-05-08 1 2 2011-07-13 PDBE Y PDBE 2000-06-28 REL EDO 1,2-ETHANEDIOL HOH water EDO 401 3 EDO EDO 401 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2015 4 HOH HOH 2015 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B HOH 2025 4 HOH HOH 2025 B HOH 2026 4 HOH HOH 2026 B HOH 2027 4 HOH HOH 2027 B HOH 2028 4 HOH HOH 2028 B HOH 2029 4 HOH HOH 2029 B HOH 2030 4 HOH HOH 2030 B HOH 2031 4 HOH HOH 2031 B HOH 2032 4 HOH HOH 2032 B HOH 2033 4 HOH HOH 2033 B HOH 2034 4 HOH HOH 2034 B HOH 2035 4 HOH HOH 2035 B HOH 2036 4 HOH HOH 2036 B HOH 2037 4 HOH HOH 2037 B HOH 2038 4 HOH HOH 2038 B HOH 2039 4 HOH HOH 2039 B HOH 2040 4 HOH HOH 2040 B HOH 2041 4 HOH HOH 2041 B HOH 2042 4 HOH HOH 2042 B HOH 2043 4 HOH HOH 2043 B HOH 2044 4 HOH HOH 2044 B HOH 2045 4 HOH HOH 2045 B HOH 2046 4 HOH HOH 2046 B HOH 2047 4 HOH HOH 2047 B HOH 2048 4 HOH HOH 2048 B HOH 2049 4 HOH HOH 2049 B HOH 2050 4 HOH HOH 2050 B HOH 2051 4 HOH HOH 2051 B HOH 2052 4 HOH HOH 2052 B HOH 2053 4 HOH HOH 2053 B HOH 2054 4 HOH HOH 2054 B HOH 2055 4 HOH HOH 2055 B HOH 2056 4 HOH HOH 2056 B HOH 2057 4 HOH HOH 2057 B HOH 2058 4 HOH HOH 2058 B HOH 2059 4 HOH HOH 2059 B HOH 2060 4 HOH HOH 2060 B HOH 2061 4 HOH HOH 2061 B HOH 2062 4 HOH HOH 2062 B HOH 2063 4 HOH HOH 2063 B HOH 2064 4 HOH HOH 2064 B HOH 2065 4 HOH HOH 2065 B HOH 2066 4 HOH HOH 2066 B HOH 2067 4 HOH HOH 2067 B HOH 2068 4 HOH HOH 2068 B HOH 2069 4 HOH HOH 2069 B HOH 2070 4 HOH HOH 2070 B HOH 2071 4 HOH HOH 2071 B HOH 2072 4 HOH HOH 2072 B HOH 2073 4 HOH HOH 2073 B HOH 2074 4 HOH HOH 2074 B HOH 2075 4 HOH HOH 2075 B HOH 2076 4 HOH HOH 2076 B HOH 2077 4 HOH HOH 2077 B HOH 2078 4 HOH HOH 2078 B HOH 2079 4 HOH HOH 2079 B HOH 2080 4 HOH HOH 2080 B HOH 2081 4 HOH HOH 2081 B HOH 2082 4 HOH HOH 2082 B HOH 2083 4 HOH HOH 2083 B HOH 2084 4 HOH HOH 2084 B HOH 2085 4 HOH HOH 2085 B HOH 2086 4 HOH HOH 2086 B HOH 2087 4 HOH HOH 2087 B HOH 2088 4 HOH HOH 2088 B n 1 -1 A GLY 1 n 2 GLY 1 A LEU 2 n 3 LEU 2 A LYS 3 n 4 LYS 3 A LEU 4 n 5 LEU 4 A ASP 5 n 6 ASP 5 A LEU 6 n 7 LEU 6 A THR 7 n 8 THR 7 A TRP 8 n 9 TRP 8 A PHE 9 n 10 PHE 9 A ASP 10 n 11 ASP 10 A LYS 11 n 12 LYS 11 A SER 12 n 13 SER 12 A THR 13 n 14 THR 13 A GLU 14 n 15 GLU 14 A ASP 15 n 16 ASP 15 A PHE 16 n 17 PHE 16 A LYS 17 n 18 LYS 17 A GLY 18 n 19 GLY 18 A GLU 19 n 20 GLU 19 A GLU 20 n 21 GLU 20 A TYR 21 n 22 TYR 21 A SER 22 n 23 SER 22 A LYS 23 n 24 LYS 23 A ASP 24 n 25 ASP 24 A PHE 25 n 26 PHE 25 A GLY 26 n 27 GLY 26 A ASP 27 n 28 ASP 27 A ASP 28 n 29 ASP 28 A GLY 29 n 30 GLY 29 A SER 30 n 31 SER 30 A VAL 31 n 32 VAL 31 A MET 32 n 33 MET 32 A GLU 33 n 34 GLU 33 A SER 34 n 35 SER 34 A LEU 35 n 36 LEU 35 A GLY 36 n 37 GLY 36 A VAL 37 n 38 VAL 37 A PRO 38 n 39 PRO 38 A PHE 39 n 40 PHE 39 A LYS 40 n 41 LYS 40 A ASP 41 n 42 ASP 41 A ASN 42 n 43 ASN 42 A VAL 43 n 44 VAL 43 A ASN 44 n 45 ASN 44 A ASN 45 n 46 ASN 45 A GLY 46 n 47 GLY 46 A CYS 47 n 48 CYS 47 A PHE 48 n 49 PHE 48 A ASP 49 n 50 ASP 49 A VAL 50 n 51 VAL 50 A ILE 51 n 52 ILE 51 A ALA 52 n 53 ALA 52 A GLU 53 n 54 GLU 53 A TRP 54 n 55 TRP 54 A VAL 55 n 56 VAL 55 A PRO 56 n 57 PRO 56 A LEU 57 n 58 LEU 57 A LEU 58 n 59 LEU 58 A GLN 59 n 60 GLN 59 A PRO 60 n 61 PRO 60 A TYR 61 n 62 TYR 61 A PHE 62 n 63 PHE 62 A ASN 63 n 64 ASN 63 A HIS 64 n 65 HIS 64 A GLN 65 n 66 GLN 65 A ILE 66 n 67 ILE 66 A ASP 67 n 68 ASP 67 A ILE 68 n 69 ILE 68 A SER 69 n 70 SER 69 A ASP 70 n 71 ASP 70 A ASN 71 n 72 ASN 71 A GLU 72 n 73 GLU 72 A TYR 73 n 74 TYR 73 A PHE 74 n 75 PHE 74 A VAL 75 n 76 VAL 75 A SER 76 n 77 SER 76 A PHE 77 n 78 PHE 77 A ASP 78 n 79 ASP 78 A TYR 79 n 80 TYR 79 A ARG 80 n 81 ARG 80 A ASP 81 n 82 ASP 81 A GLY 82 n 83 GLY 82 A ASP 83 n 84 ASP 83 A TRP 84 n 85 TRP 84 A GLY 1 n 1 GLY 1 B PHE 2 n 2 PHE 2 B LYS 3 n 3 LYS 3 B ASP 4 n 4 ASP 4 B TYR 5 n 5 TYR 5 B GLY 6 n 6 GLY 6 B HIS 7 n 7 HIS 7 B ASP 8 n 8 ASP 8 B TYR 9 n 9 TYR 9 B HIS 10 n 10 HIS 10 B PRO 11 n 11 PRO 11 B ALA 12 n 12 ALA 12 B PRO 13 n 13 PRO 13 B LYS 14 n 14 LYS 14 B THR 15 n 15 THR 15 B GLU 16 n 16 GLU 16 B ASN 17 n 17 ASN 17 B ILE 18 n 18 ILE 18 B LYS 19 n 19 LYS 19 B GLY 20 n 20 GLY 20 B LEU 21 n 21 LEU 21 B GLY 22 n 22 GLY 22 B ASP 23 n 23 ASP 23 B LEU 24 n 24 LEU 24 B LYS 25 n 25 LYS 25 B PRO 26 n 26 PRO 26 B GLY 27 n 27 GLY 27 B ILE 28 n 28 ILE 28 B PRO 29 n 29 PRO 29 B LYS 30 n 30 LYS 30 B THR 31 n 31 THR 31 B PRO 32 n 32 PRO 32 B LYS 33 n 33 LYS 33 B GLN 34 n 34 GLN 34 B ASN 35 n 35 ASN 35 B GLY 36 n 36 GLY 36 B GLY 37 n 37 GLY 37 B GLY 38 n 38 GLY 38 B LYS 39 n 39 LYS 39 B ARG 40 n 40 ARG 40 B LYS 41 n 41 LYS 41 B ARG 42 n 42 ARG 42 B TRP 43 n 43 TRP 43 B THR 44 n 44 THR 44 B GLY 45 n 45 GLY 45 B ASP 46 n 46 ASP 46 B LYS 47 n 47 LYS 47 B GLY 48 n 48 GLY 48 B ARG 49 n 49 ARG 49 B LYS 50 n 50 LYS 50 B ILE 51 n 51 ILE 51 B TYR 52 n 52 TYR 52 B GLU 53 n 53 GLU 53 B TRP 54 n 54 TRP 54 B ASP 55 n 55 ASP 55 B SER 56 n 56 SER 56 B GLN 57 n 57 GLN 57 B HIS 58 n 58 HIS 58 B GLY 59 n 59 GLY 59 B GLU 60 n 60 GLU 60 B LEU 61 n 61 LEU 61 B GLU 62 n 62 GLU 62 B GLY 63 n 63 GLY 63 B TYR 64 n 64 TYR 64 B ARG 65 n 65 ARG 65 B ALA 66 n 66 ALA 66 B SER 67 n 67 SER 67 B ASP 68 n 68 ASP 68 B GLY 69 n 69 GLY 69 B GLN 70 n 70 GLN 70 B HIS 71 n 71 HIS 71 B LEU 72 n 72 LEU 72 B GLY 73 n 73 GLY 73 B SER 74 n 74 SER 74 B PHE 75 n 75 PHE 75 B ASP 76 n 76 ASP 76 B PRO 77 n 77 PRO 77 B LYS 78 n 78 LYS 78 B THR 79 n 79 THR 79 B GLY 80 n 80 GLY 80 B ASN 81 n 81 ASN 81 B GLN 82 n 82 GLN 82 B LEU 83 n 83 LEU 83 B LYS 84 n 84 LYS 84 B GLY 85 n 85 GLY 85 B PRO 86 n 86 PRO 86 B ASP 87 n 87 ASP 87 B PRO 88 n 88 PRO 88 B LYS 89 n 89 LYS 89 B ARG 90 n 90 ARG 90 B ASN 91 n 91 ASN 91 B ILE 92 n 92 ILE 92 B LYS 93 n 93 LYS 93 B LYS 94 n 94 LYS 94 B TYR 95 n 95 TYR 95 B LEU 96 n 96 LEU 96 B software_defined_assembly PQS 2 dimeric 2980 -13.6 10960 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 48 A O PHE 49 A N VAL 75 A N VAL 76 A O GLU 72 A O GLU 73 A N PHE 9 A N PHE 10 A O LEU 6 A O LEU 7 A N GLU 20 A N GLU 21 B O LYS 25 B O LYS 25 B N THR 44 B N THR 44 B O TRP 43 B O TRP 43 B N TYR 52 B N TYR 52 B O ILE 51 B O ILE 51 B N TYR 64 B N TYR 64 1 A MET -1 A MET 1 1 Y 1 5.70 0.90 118.30 124.00 B B B CB CG OD1 ASP ASP ASP 55 55 55 N 1 A A N CA GLY GLY 1 1 0.113 0.015 1.456 1.569 N 1 A ASN 45 -154.01 49.15 1 B LYS 30 -142.16 -7.79 0.228 0.192 0.192 2.4 30 726 14892 5.0 97.5 100000 1 THROUGHOUT 2 MAD 2.4 30 171 1633 4 0 1458 0.021 1.86 2.400 20.000 1E44 14892 0.03900 1 37.8000 3.000 98.7 2.40 2.45 2.800 0.23700 1 2.70 97.5 refinement CNS 0.5 data reduction DENZO data scaling SCALA phasing SOLVE IMMUNITY PROTEIN, COLICIN E3 ribonuclease domain of colicin E3 in complex with its immunity protein 1 N N 2 N N 3 N N 4 N N 4 N N A GLY 29 A GLY 30 HELX_P A GLY 36 A GLY 37 1 1 8 A GLU 53 A GLU 54 HELX_P A GLN 59 A GLN 60 1 2 7 A PRO 60 A PRO 61 HELX_P A PHE 62 A PHE 63 5 3 3 B GLY 1 B GLY 1 HELX_P B HIS 7 B HIS 7 1 4 7 B LYS 14 B LYS 14 HELX_P B ILE 18 B ILE 18 5 5 5 B ILE 92 B ILE 92 HELX_P B LEU 96 B LEU 96 5 6 5 RIBONUCLEASE RIBONUCLEASE, INHIBITION, PROTEIN-PROTEIN INTERACTIONS, RIBOSOME INACTIVATION, TOXIN IMM3_ECOLI UNP 1 P02984 CEA3_ECOLI UNP 2 P00646 1 85 1E44 -1 84 P02984 A 1 1 85 456 551 1E44 1 96 P00646 B 2 1 96 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A CYS 47 A CYS 48 A ASP 49 A ASP 50 A ASN 71 A ASN 72 A TYR 79 A TYR 80 A LEU 2 A LEU 3 A ASP 10 A ASP 11 A PHE 16 A PHE 17 A TYR 21 A TYR 22 B LEU 24 B LEU 24 B PRO 26 B PRO 26 B ARG 42 B ARG 42 B GLY 45 B GLY 45 B LYS 50 B LYS 50 B ASP 55 B ASP 55 B GLU 60 B GLU 60 B ARG 65 B ARG 65 BINDING SITE FOR RESIDUE EDO B 401 Software 7 A ASP 5 A ASP 6 7 1_555 A GLU 19 A GLU 20 7 1_555 B THR 15 B THR 15 7 1_555 B TRP 43 B TRP 43 7 1_555 B HOH 2038 E HOH 7 1_555 B HOH 2054 E HOH 7 1_555 B HOH 2087 E HOH 7 1_555 152 P 31 2 1