0.016584
0.000000
0.001247
0.000000
0.012853
0.000000
0.000000
0.000000
0.017380
0.00000
0.00000
0.00000
Mueller, C.W.
Schulz, G.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
94.30
90.00
60.300
77.800
57.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C20 H29 N10 O22 P5
916.367
BIS(ADENOSINE)-5'-PENTAPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
15
42
49
10.1002/prot.340150106
8451239
Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop.
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
213
627
10.1016/S0022-2836(05)80250-5
2162964
Induced-Fit Movements in Adenylate Kinases
1990
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
202
909
10.1016/0022-2836(88)90567-0
2845103
Structure of the Complex of Adenylate Kinase from Escherichia Coli with the Inhibitor P1, P5-Bis (Adenosine-5'-) Pentaphosphate
1988
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
279.0
1
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
AP5A
23678.150
Adenylate kinase
2.7.4.3
L9P
2
man
polymer
916.367
BIS(ADENOSINE)-5'-PENTAPHOSPHATE
2
syn
non-polymer
AK,ATP-AMP transphosphorylase,ATP:AMP phosphotransferase,Adenylate monophosphate kinase
no
no
MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG
FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG
FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
CV2
sample
1
214
adk, dnaW, plsA, b0474, JW0463
562
Escherichia coli
562
Escherichia coli
Biological sequence
2.85
56.84
7.20
pH 7.20
diffrn_source
citation
citation_author
entity
entity_name_com
entity_src_gen
entity_src_nat
struct_ref
struct_ref_seq
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Database references
Source and taxonomy
Structure summary
1
0
2000-08-04
1
1
2011-05-08
1
2
2011-07-13
1
3
2017-07-05
1
4
2018-11-21
_diffrn_source.type
_citation.journal_abbrev
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_citation_author.name
_entity.pdbx_description
_entity.pdbx_mutation
_entity.src_method
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_seq_one_letter_code
_struct_ref_seq.pdbx_db_accession
ADENYLATE KINASE
STRUCTURE OF PHOSPHOTRANSFERASE
ADENYLATE KINASE (E.C.2.7.4.3) COMPLEX WITH THE INHIBITOR AP=5=AADENYLATE KINASE
ADENYLATE KINASE (ADK) (E.C.2.7.4.3)
MUTANT G10V OF ADENYLATE KINASE FROM E. COLI, MODIFIED IN THE GLY-LOOP
PDBE
Y
PDBE
2000-07-12
REL
AP5
BIS(ADENOSINE)-5'-PENTAPHOSPHATE
CHAIN A, B ENGINEERED MUTATION PRO9LEU
AP5
215
2
AP5
AP5
215
A
AP5
215
2
AP5
AP5
215
B
MET
1
n
1
MET
1
A
ARG
2
n
2
ARG
2
A
ILE
3
n
3
ILE
3
A
ILE
4
n
4
ILE
4
A
LEU
5
n
5
LEU
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
ALA
8
n
8
ALA
8
A
LEU
9
n
9
LEU
9
A
VAL
10
n
10
VAL
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
LYS
13
n
13
LYS
13
A
GLY
14
n
14
GLY
14
A
THR
15
n
15
THR
15
A
GLN
16
n
16
GLN
16
A
ALA
17
n
17
ALA
17
A
GLN
18
n
18
GLN
18
A
PHE
19
n
19
PHE
19
A
ILE
20
n
20
ILE
20
A
MET
21
n
21
MET
21
A
GLU
22
n
22
GLU
22
A
LYS
23
n
23
LYS
23
A
TYR
24
n
24
TYR
24
A
GLY
25
n
25
GLY
25
A
ILE
26
n
26
ILE
26
A
PRO
27
n
27
PRO
27
A
GLN
28
n
28
GLN
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
THR
31
n
31
THR
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
MET
34
n
34
MET
34
A
LEU
35
n
35
LEU
35
A
ARG
36
n
36
ARG
36
A
ALA
37
n
37
ALA
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
LYS
40
n
40
LYS
40
A
SER
41
n
41
SER
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
LYS
47
n
47
LYS
47
A
GLN
48
n
48
GLN
48
A
ALA
49
n
49
ALA
49
A
LYS
50
n
50
LYS
50
A
ASP
51
n
51
ASP
51
A
ILE
52
n
52
ILE
52
A
MET
53
n
53
MET
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
GLY
56
n
56
GLY
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
VAL
59
n
59
VAL
59
A
THR
60
n
60
THR
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
LEU
63
n
63
LEU
63
A
VAL
64
n
64
VAL
64
A
ILE
65
n
65
ILE
65
A
ALA
66
n
66
ALA
66
A
LEU
67
n
67
LEU
67
A
VAL
68
n
68
VAL
68
A
LYS
69
n
69
LYS
69
A
GLU
70
n
70
GLU
70
A
ARG
71
n
71
ARG
71
A
ILE
72
n
72
ILE
72
A
ALA
73
n
73
ALA
73
A
GLN
74
n
74
GLN
74
A
GLU
75
n
75
GLU
75
A
ASP
76
n
76
ASP
76
A
CYS
77
n
77
CYS
77
A
ARG
78
n
78
ARG
78
A
ASN
79
n
79
ASN
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
LEU
82
n
82
LEU
82
A
LEU
83
n
83
LEU
83
A
ASP
84
n
84
ASP
84
A
GLY
85
n
85
GLY
85
A
PHE
86
n
86
PHE
86
A
PRO
87
n
87
PRO
87
A
ARG
88
n
88
ARG
88
A
THR
89
n
89
THR
89
A
ILE
90
n
90
ILE
90
A
PRO
91
n
91
PRO
91
A
GLN
92
n
92
GLN
92
A
ALA
93
n
93
ALA
93
A
ASP
94
n
94
ASP
94
A
ALA
95
n
95
ALA
95
A
MET
96
n
96
MET
96
A
LYS
97
n
97
LYS
97
A
GLU
98
n
98
GLU
98
A
ALA
99
n
99
ALA
99
A
GLY
100
n
100
GLY
100
A
ILE
101
n
101
ILE
101
A
ASN
102
n
102
ASN
102
A
VAL
103
n
103
VAL
103
A
ASP
104
n
104
ASP
104
A
TYR
105
n
105
TYR
105
A
VAL
106
n
106
VAL
106
A
LEU
107
n
107
LEU
107
A
GLU
108
n
108
GLU
108
A
PHE
109
n
109
PHE
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
PRO
112
n
112
PRO
112
A
ASP
113
n
113
ASP
113
A
GLU
114
n
114
GLU
114
A
LEU
115
n
115
LEU
115
A
ILE
116
n
116
ILE
116
A
VAL
117
n
117
VAL
117
A
ASP
118
n
118
ASP
118
A
ARG
119
n
119
ARG
119
A
ILE
120
n
120
ILE
120
A
VAL
121
n
121
VAL
121
A
GLY
122
n
122
GLY
122
A
ARG
123
n
123
ARG
123
A
ARG
124
n
124
ARG
124
A
VAL
125
n
125
VAL
125
A
HIS
126
n
126
HIS
126
A
ALA
127
n
127
ALA
127
A
PRO
128
n
128
PRO
128
A
SER
129
n
129
SER
129
A
GLY
130
n
130
GLY
130
A
ARG
131
n
131
ARG
131
A
VAL
132
n
132
VAL
132
A
TYR
133
n
133
TYR
133
A
HIS
134
n
134
HIS
134
A
VAL
135
n
135
VAL
135
A
LYS
136
n
136
LYS
136
A
PHE
137
n
137
PHE
137
A
ASN
138
n
138
ASN
138
A
PRO
139
n
139
PRO
139
A
PRO
140
n
140
PRO
140
A
LYS
141
n
141
LYS
141
A
VAL
142
n
142
VAL
142
A
GLU
143
n
143
GLU
143
A
GLY
144
n
144
GLY
144
A
LYS
145
n
145
LYS
145
A
ASP
146
n
146
ASP
146
A
ASP
147
n
147
ASP
147
A
VAL
148
n
148
VAL
148
A
THR
149
n
149
THR
149
A
GLY
150
n
150
GLY
150
A
GLU
151
n
151
GLU
151
A
GLU
152
n
152
GLU
152
A
LEU
153
n
153
LEU
153
A
THR
154
n
154
THR
154
A
THR
155
n
155
THR
155
A
ARG
156
n
156
ARG
156
A
LYS
157
n
157
LYS
157
A
ASP
158
n
158
ASP
158
A
ASP
159
n
159
ASP
159
A
GLN
160
n
160
GLN
160
A
GLU
161
n
161
GLU
161
A
GLU
162
n
162
GLU
162
A
THR
163
n
163
THR
163
A
VAL
164
n
164
VAL
164
A
ARG
165
n
165
ARG
165
A
LYS
166
n
166
LYS
166
A
ARG
167
n
167
ARG
167
A
LEU
168
n
168
LEU
168
A
VAL
169
n
169
VAL
169
A
GLU
170
n
170
GLU
170
A
TYR
171
n
171
TYR
171
A
HIS
172
n
172
HIS
172
A
GLN
173
n
173
GLN
173
A
MET
174
n
174
MET
174
A
THR
175
n
175
THR
175
A
ALA
176
n
176
ALA
176
A
PRO
177
n
177
PRO
177
A
LEU
178
n
178
LEU
178
A
ILE
179
n
179
ILE
179
A
GLY
180
n
180
GLY
180
A
TYR
181
n
181
TYR
181
A
TYR
182
n
182
TYR
182
A
SER
183
n
183
SER
183
A
LYS
184
n
184
LYS
184
A
GLU
185
n
185
GLU
185
A
ALA
186
n
186
ALA
186
A
GLU
187
n
187
GLU
187
A
ALA
188
n
188
ALA
188
A
GLY
189
n
189
GLY
189
A
ASN
190
n
190
ASN
190
A
THR
191
n
191
THR
191
A
LYS
192
n
192
LYS
192
A
TYR
193
n
193
TYR
193
A
ALA
194
n
194
ALA
194
A
LYS
195
n
195
LYS
195
A
VAL
196
n
196
VAL
196
A
ASP
197
n
197
ASP
197
A
GLY
198
n
198
GLY
198
A
THR
199
n
199
THR
199
A
LYS
200
n
200
LYS
200
A
PRO
201
n
201
PRO
201
A
VAL
202
n
202
VAL
202
A
ALA
203
n
203
ALA
203
A
GLU
204
n
204
GLU
204
A
VAL
205
n
205
VAL
205
A
ARG
206
n
206
ARG
206
A
ALA
207
n
207
ALA
207
A
ASP
208
n
208
ASP
208
A
LEU
209
n
209
LEU
209
A
GLU
210
n
210
GLU
210
A
LYS
211
n
211
LYS
211
A
ILE
212
n
212
ILE
212
A
LEU
213
n
213
LEU
213
A
GLY
214
n
214
GLY
214
A
MET
1
n
1
MET
1
B
ARG
2
n
2
ARG
2
B
ILE
3
n
3
ILE
3
B
ILE
4
n
4
ILE
4
B
LEU
5
n
5
LEU
5
B
LEU
6
n
6
LEU
6
B
GLY
7
n
7
GLY
7
B
ALA
8
n
8
ALA
8
B
LEU
9
n
9
LEU
9
B
VAL
10
n
10
VAL
10
B
ALA
11
n
11
ALA
11
B
GLY
12
n
12
GLY
12
B
LYS
13
n
13
LYS
13
B
GLY
14
n
14
GLY
14
B
THR
15
n
15
THR
15
B
GLN
16
n
16
GLN
16
B
ALA
17
n
17
ALA
17
B
GLN
18
n
18
GLN
18
B
PHE
19
n
19
PHE
19
B
ILE
20
n
20
ILE
20
B
MET
21
n
21
MET
21
B
GLU
22
n
22
GLU
22
B
LYS
23
n
23
LYS
23
B
TYR
24
n
24
TYR
24
B
GLY
25
n
25
GLY
25
B
ILE
26
n
26
ILE
26
B
PRO
27
n
27
PRO
27
B
GLN
28
n
28
GLN
28
B
ILE
29
n
29
ILE
29
B
SER
30
n
30
SER
30
B
THR
31
n
31
THR
31
B
GLY
32
n
32
GLY
32
B
ASP
33
n
33
ASP
33
B
MET
34
n
34
MET
34
B
LEU
35
n
35
LEU
35
B
ARG
36
n
36
ARG
36
B
ALA
37
n
37
ALA
37
B
ALA
38
n
38
ALA
38
B
VAL
39
n
39
VAL
39
B
LYS
40
n
40
LYS
40
B
SER
41
n
41
SER
41
B
GLY
42
n
42
GLY
42
B
SER
43
n
43
SER
43
B
GLU
44
n
44
GLU
44
B
LEU
45
n
45
LEU
45
B
GLY
46
n
46
GLY
46
B
LYS
47
n
47
LYS
47
B
GLN
48
n
48
GLN
48
B
ALA
49
n
49
ALA
49
B
LYS
50
n
50
LYS
50
B
ASP
51
n
51
ASP
51
B
ILE
52
n
52
ILE
52
B
MET
53
n
53
MET
53
B
ASP
54
n
54
ASP
54
B
ALA
55
n
55
ALA
55
B
GLY
56
n
56
GLY
56
B
LYS
57
n
57
LYS
57
B
LEU
58
n
58
LEU
58
B
VAL
59
n
59
VAL
59
B
THR
60
n
60
THR
60
B
ASP
61
n
61
ASP
61
B
GLU
62
n
62
GLU
62
B
LEU
63
n
63
LEU
63
B
VAL
64
n
64
VAL
64
B
ILE
65
n
65
ILE
65
B
ALA
66
n
66
ALA
66
B
LEU
67
n
67
LEU
67
B
VAL
68
n
68
VAL
68
B
LYS
69
n
69
LYS
69
B
GLU
70
n
70
GLU
70
B
ARG
71
n
71
ARG
71
B
ILE
72
n
72
ILE
72
B
ALA
73
n
73
ALA
73
B
GLN
74
n
74
GLN
74
B
GLU
75
n
75
GLU
75
B
ASP
76
n
76
ASP
76
B
CYS
77
n
77
CYS
77
B
ARG
78
n
78
ARG
78
B
ASN
79
n
79
ASN
79
B
GLY
80
n
80
GLY
80
B
PHE
81
n
81
PHE
81
B
LEU
82
n
82
LEU
82
B
LEU
83
n
83
LEU
83
B
ASP
84
n
84
ASP
84
B
GLY
85
n
85
GLY
85
B
PHE
86
n
86
PHE
86
B
PRO
87
n
87
PRO
87
B
ARG
88
n
88
ARG
88
B
THR
89
n
89
THR
89
B
ILE
90
n
90
ILE
90
B
PRO
91
n
91
PRO
91
B
GLN
92
n
92
GLN
92
B
ALA
93
n
93
ALA
93
B
ASP
94
n
94
ASP
94
B
ALA
95
n
95
ALA
95
B
MET
96
n
96
MET
96
B
LYS
97
n
97
LYS
97
B
GLU
98
n
98
GLU
98
B
ALA
99
n
99
ALA
99
B
GLY
100
n
100
GLY
100
B
ILE
101
n
101
ILE
101
B
ASN
102
n
102
ASN
102
B
VAL
103
n
103
VAL
103
B
ASP
104
n
104
ASP
104
B
TYR
105
n
105
TYR
105
B
VAL
106
n
106
VAL
106
B
LEU
107
n
107
LEU
107
B
GLU
108
n
108
GLU
108
B
PHE
109
n
109
PHE
109
B
ASP
110
n
110
ASP
110
B
VAL
111
n
111
VAL
111
B
PRO
112
n
112
PRO
112
B
ASP
113
n
113
ASP
113
B
GLU
114
n
114
GLU
114
B
LEU
115
n
115
LEU
115
B
ILE
116
n
116
ILE
116
B
VAL
117
n
117
VAL
117
B
ASP
118
n
118
ASP
118
B
ARG
119
n
119
ARG
119
B
ILE
120
n
120
ILE
120
B
VAL
121
n
121
VAL
121
B
GLY
122
n
122
GLY
122
B
ARG
123
n
123
ARG
123
B
ARG
124
n
124
ARG
124
B
VAL
125
n
125
VAL
125
B
HIS
126
n
126
HIS
126
B
ALA
127
n
127
ALA
127
B
PRO
128
n
128
PRO
128
B
SER
129
n
129
SER
129
B
GLY
130
n
130
GLY
130
B
ARG
131
n
131
ARG
131
B
VAL
132
n
132
VAL
132
B
TYR
133
n
133
TYR
133
B
HIS
134
n
134
HIS
134
B
VAL
135
n
135
VAL
135
B
LYS
136
n
136
LYS
136
B
PHE
137
n
137
PHE
137
B
ASN
138
n
138
ASN
138
B
PRO
139
n
139
PRO
139
B
PRO
140
n
140
PRO
140
B
LYS
141
n
141
LYS
141
B
VAL
142
n
142
VAL
142
B
GLU
143
n
143
GLU
143
B
GLY
144
n
144
GLY
144
B
LYS
145
n
145
LYS
145
B
ASP
146
n
146
ASP
146
B
ASP
147
n
147
ASP
147
B
VAL
148
n
148
VAL
148
B
THR
149
n
149
THR
149
B
GLY
150
n
150
GLY
150
B
GLU
151
n
151
GLU
151
B
GLU
152
n
152
GLU
152
B
LEU
153
n
153
LEU
153
B
THR
154
n
154
THR
154
B
THR
155
n
155
THR
155
B
ARG
156
n
156
ARG
156
B
LYS
157
n
157
LYS
157
B
ASP
158
n
158
ASP
158
B
ASP
159
n
159
ASP
159
B
GLN
160
n
160
GLN
160
B
GLU
161
n
161
GLU
161
B
GLU
162
n
162
GLU
162
B
THR
163
n
163
THR
163
B
VAL
164
n
164
VAL
164
B
ARG
165
n
165
ARG
165
B
LYS
166
n
166
LYS
166
B
ARG
167
n
167
ARG
167
B
LEU
168
n
168
LEU
168
B
VAL
169
n
169
VAL
169
B
GLU
170
n
170
GLU
170
B
TYR
171
n
171
TYR
171
B
HIS
172
n
172
HIS
172
B
GLN
173
n
173
GLN
173
B
MET
174
n
174
MET
174
B
THR
175
n
175
THR
175
B
ALA
176
n
176
ALA
176
B
PRO
177
n
177
PRO
177
B
LEU
178
n
178
LEU
178
B
ILE
179
n
179
ILE
179
B
GLY
180
n
180
GLY
180
B
TYR
181
n
181
TYR
181
B
TYR
182
n
182
TYR
182
B
SER
183
n
183
SER
183
B
LYS
184
n
184
LYS
184
B
GLU
185
n
185
GLU
185
B
ALA
186
n
186
ALA
186
B
GLU
187
n
187
GLU
187
B
ALA
188
n
188
ALA
188
B
GLY
189
n
189
GLY
189
B
ASN
190
n
190
ASN
190
B
THR
191
n
191
THR
191
B
LYS
192
n
192
LYS
192
B
TYR
193
n
193
TYR
193
B
ALA
194
n
194
ALA
194
B
LYS
195
n
195
LYS
195
B
VAL
196
n
196
VAL
196
B
ASP
197
n
197
ASP
197
B
GLY
198
n
198
GLY
198
B
THR
199
n
199
THR
199
B
LYS
200
n
200
LYS
200
B
PRO
201
n
201
PRO
201
B
VAL
202
n
202
VAL
202
B
ALA
203
n
203
ALA
203
B
GLU
204
n
204
GLU
204
B
VAL
205
n
205
VAL
205
B
ARG
206
n
206
ARG
206
B
ALA
207
n
207
ALA
207
B
ASP
208
n
208
ASP
208
B
LEU
209
n
209
LEU
209
B
GLU
210
n
210
GLU
210
B
LYS
211
n
211
LYS
211
B
ILE
212
n
212
ILE
212
B
LEU
213
n
213
LEU
213
B
GLY
214
n
214
GLY
214
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
29
A
N
ILE
29
A
O
LEU
82
A
O
LEU
82
A
N
LEU
83
A
N
LEU
83
A
O
ILE
3
A
O
ILE
3
A
N
ILE
4
A
N
ILE
4
A
O
TYR
105
A
O
TYR
105
A
N
GLU
108
A
N
GLU
108
A
O
ALA
194
A
O
ALA
194
A
N
HIS
126
A
N
HIS
126
A
O
ARG
131
A
O
ARG
131
B
N
ILE
29
B
N
ILE
29
B
O
LEU
82
B
O
LEU
82
B
N
LEU
83
B
N
LEU
83
B
O
ILE
3
B
O
ILE
3
B
N
ILE
4
B
N
ILE
4
B
O
TYR
105
B
O
TYR
105
B
N
GLU
108
B
N
GLU
108
B
O
ALA
194
B
O
ALA
194
B
N
HIS
126
B
N
HIS
126
B
O
ARG
131
B
O
ARG
131
1
A
CB
VAL
10
A
CB
VAL
10
1
Y
1
A
CG1
VAL
10
A
CG1
VAL
10
1
Y
1
A
CG2
VAL
10
A
CG2
VAL
10
1
Y
1
B
CB
VAL
10
B
CB
VAL
10
1
Y
1
B
CG1
VAL
10
B
CG1
VAL
10
1
Y
1
B
CG2
VAL
10
B
CG2
VAL
10
1
Y
1
B
TYR
171
0.069
SIDE CHAIN
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
2
2
2
N
1
-5.21
0.50
120.30
115.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
2
2
2
N
1
5.72
0.90
118.30
124.02
A
A
A
CB
CG
OD1
ASP
ASP
ASP
33
33
33
N
1
-18.11
1.60
100.20
82.09
A
A
A
CG
SD
CE
MET
MET
MET
34
34
34
N
1
-15.12
2.20
113.40
98.28
A
A
A
CA
CB
CG
LYS
LYS
LYS
50
50
50
N
1
14.27
2.30
115.30
129.57
A
A
A
CA
CB
CG
LEU
LEU
LEU
67
67
67
N
1
-4.53
0.50
120.30
115.77
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
71
71
71
N
1
3.90
0.50
120.30
124.20
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
123
123
123
N
1
3.81
0.50
120.30
124.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
165
165
165
N
1
-3.15
0.50
120.30
117.15
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
165
165
165
N
1
-4.91
0.60
121.00
116.09
A
A
A
CB
CG
CD2
TYR
TYR
TYR
181
181
181
N
1
-14.64
2.30
110.00
95.36
B
B
B
OG1
CB
CG2
THR
THR
THR
15
15
15
N
1
-11.67
1.60
100.20
88.53
B
B
B
CG
SD
CE
MET
MET
MET
34
34
34
N
1
-12.20
2.00
110.40
98.20
B
B
B
CB
CA
C
GLN
GLN
GLN
48
48
48
N
1
-19.24
2.20
113.40
94.16
B
B
B
CA
CB
CG
LYS
LYS
LYS
50
50
50
N
1
17.05
2.30
115.30
132.35
B
B
B
CA
CB
CG
LEU
LEU
LEU
67
67
67
N
1
-10.20
1.60
110.90
100.70
B
B
B
CG1
CB
CG2
VAL
VAL
VAL
68
68
68
N
1
-5.67
0.50
120.30
114.63
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
71
71
71
N
1
-11.03
1.50
110.90
99.87
B
B
B
CA
CB
CG2
VAL
VAL
VAL
111
111
111
N
1
3.35
0.50
120.30
123.65
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
3.03
0.50
120.30
123.33
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
123
123
123
N
1
3.43
0.50
120.30
123.73
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
165
165
165
N
1
-3.87
0.60
121.00
117.13
B
B
B
CB
CG
CD2
TYR
TYR
TYR
181
181
181
N
1
16.22
2.20
113.40
129.62
B
B
B
CA
CB
CG
LYS
LYS
LYS
184
184
184
N
1
A
A
NE2
CD2
HIS
HIS
126
126
-0.072
0.011
1.373
1.301
N
1
A
A
NE2
CD2
HIS
HIS
134
134
-0.077
0.011
1.373
1.296
N
1
B
B
CA
CB
CYS
CYS
77
77
-0.080
0.013
1.526
1.446
N
1
B
B
NE2
CD2
HIS
HIS
126
126
-0.076
0.011
1.373
1.297
N
1
B
B
NE2
CD2
HIS
HIS
134
134
-0.087
0.011
1.373
1.286
N
1
A
VAL
10
68.80
-6.36
1
A
ALA
11
-53.40
-8.77
1
A
GLU
75
-48.81
-9.44
1
A
ASP
113
-35.05
-25.91
1
A
ALA
127
-45.08
-79.12
1
A
PRO
128
-33.27
-39.66
1
A
ASN
138
-163.59
67.74
1
A
ALA
188
-59.03
-5.26
1
A
THR
191
-162.02
-168.02
1
A
PRO
201
-23.57
125.48
1
B
ASN
138
-158.72
63.49
1
B
PRO
201
-28.42
134.00
0.178
0.178
1.85
10
7261
90
1
0.0
MOLECULAR REPLACEMENT
1.85
10
0
3428
114
0
3314
0.019
3.7
3.400
10.000
1E4Y
7261
0.000
0.10000
0.10000
1
2.000
90.0
refinement
X-PLOR
1.5
phasing
X-PLOR
ADENYLATE KINASE (E.C.2.7.4.3)
Mutant P9L of adenylate kinase from E. coli, modified in the Gly-loop
1
N
N
1
N
N
2
N
N
2
N
N
A
GLY
12
A
GLY
12
HELX_P
A
TYR
24
A
TYR
24
1
1
13
A
THR
31
A
THR
31
HELX_P
A
LYS
40
A
LYS
40
1
2
10
A
SER
43
A
SER
43
HELX_P
A
ALA
55
A
ALA
55
1
3
13
A
THR
60
A
THR
60
HELX_P
A
ALA
73
A
ALA
73
1
4
14
A
ASP
76
A
ASP
76
HELX_P
A
GLY
80
A
GLY
80
5
5
5
A
THR
89
A
THR
89
HELX_P
A
GLY
100
A
GLY
100
1
6
12
A
GLU
114
A
GLU
114
HELX_P
A
GLY
122
A
GLY
122
1
7
9
A
ARG
156
A
ARG
156
HELX_P
A
ASP
159
A
ASP
159
5
8
4
A
GLN
160
A
GLN
160
HELX_P
A
THR
175
A
THR
175
1
9
16
A
ALA
176
A
ALA
176
HELX_P
A
ALA
188
A
ALA
188
1
10
13
A
PRO
201
A
PRO
201
HELX_P
A
GLY
214
A
GLY
214
1
11
14
B
GLY
12
B
GLY
12
HELX_P
B
TYR
24
B
TYR
24
1
12
13
B
THR
31
B
THR
31
HELX_P
B
GLY
42
B
GLY
42
1
13
12
B
SER
43
B
SER
43
HELX_P
B
ALA
55
B
ALA
55
1
14
13
B
THR
60
B
THR
60
HELX_P
B
ALA
73
B
ALA
73
1
15
14
B
GLN
74
B
GLN
74
HELX_P
B
GLY
80
B
GLY
80
5
16
7
B
THR
89
B
THR
89
HELX_P
B
GLY
100
B
GLY
100
1
17
12
B
GLU
114
B
GLU
114
HELX_P
B
GLY
122
B
GLY
122
1
18
9
B
ALA
127
B
ALA
127
HELX_P
B
GLY
130
B
GLY
130
5
19
4
B
GLN
160
B
GLN
160
HELX_P
B
THR
175
B
THR
175
1
20
16
B
PRO
177
B
PRO
177
HELX_P
B
GLY
189
B
GLY
189
1
21
13
B
PRO
201
B
PRO
201
HELX_P
B
GLY
214
B
GLY
214
1
22
14
TRANSFERASE(PHOSPHOTRANSFERASE)
TRANSFERASE(PHOSPHOTRANSFERASE)
A
PHE
86
A
PHE
86
1
A
PRO
87
A
PRO
87
-13.16
B
PHE
86
B
PHE
86
1
B
PRO
87
B
PRO
87
-19.64
given
-0.995341
0.068333
0.068023
0.038108
0.926860
-0.373469
-0.088568
-0.369136
-0.925145
38.70362
47.46029
42.28705
KAD_ECOLI
UNP
1
1
P69441
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG
FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
1
214
1E4Y
1
214
P69441
A
1
1
214
1
214
1E4Y
1
214
P69441
B
1
1
214
1
PRO
engineered mutation
LEU
9
1E4Y
A
P69441
UNP
9
9
1
GLY
conflict
VAL
10
1E4Y
A
P69441
UNP
10
10
2
PRO
engineered mutation
LEU
9
1E4Y
B
P69441
UNP
9
9
2
GLY
conflict
VAL
10
1E4Y
B
P69441
UNP
10
10
5
2
5
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
GLN
28
A
GLN
28
A
SER
30
A
SER
30
A
PHE
81
A
PHE
81
A
ASP
84
A
ASP
84
A
ARG
2
A
ARG
2
A
GLY
7
A
GLY
7
A
TYR
105
A
TYR
105
A
ASP
110
A
ASP
110
A
TYR
193
A
TYR
193
A
ASP
197
A
ASP
197
A
ARG
123
A
ARG
123
A
HIS
126
A
HIS
126
A
ARG
131
A
ARG
131
A
HIS
134
A
HIS
134
B
GLN
28
B
GLN
28
B
SER
30
B
SER
30
B
PHE
81
B
PHE
81
B
ASP
84
B
ASP
84
B
ARG
2
B
ARG
2
B
GLY
7
B
GLY
7
B
TYR
105
B
TYR
105
B
ASP
110
B
ASP
110
B
TYR
193
B
TYR
193
B
ASP
197
B
ASP
197
B
ARG
123
B
ARG
123
B
HIS
126
B
HIS
126
B
ARG
131
B
ARG
131
B
HIS
134
B
HIS
134
BINDING SITE FOR RESIDUE AP5 A 215
Software
27
BINDING SITE FOR RESIDUE AP5 B 215
Software
29
A
ALA
8
A
ALA
8
27
1_555
A
LEU
9
A
LEU
9
27
1_555
A
VAL
10
A
VAL
10
27
1_555
A
ALA
11
A
ALA
11
27
1_555
A
GLY
12
A
GLY
12
27
1_555
A
LYS
13
A
LYS
13
27
1_555
A
GLY
14
A
GLY
14
27
1_555
A
THR
15
A
THR
15
27
1_555
A
THR
31
A
THR
31
27
1_555
A
GLY
32
A
GLY
32
27
1_555
A
ARG
36
A
ARG
36
27
1_555
A
LYS
57
A
LYS
57
27
1_555
A
LEU
58
A
LEU
58
27
1_555
A
VAL
59
A
VAL
59
27
1_555
A
VAL
64
A
VAL
64
27
1_555
A
GLY
85
A
GLY
85
27
1_555
A
ARG
88
A
ARG
88
27
1_555
A
GLN
92
A
GLN
92
27
1_555
A
ARG
119
A
ARG
119
27
1_555
A
ARG
123
A
ARG
123
27
1_555
A
TYR
133
A
TYR
133
27
1_555
A
HIS
134
A
HIS
134
27
1_555
A
PHE
137
A
PHE
137
27
1_555
A
ASN
138
A
ASN
138
27
1_555
A
ARG
156
A
ARG
156
27
1_555
A
ARG
167
A
ARG
167
27
1_555
A
LYS
200
A
LYS
200
27
1_555
B
ALA
8
B
ALA
8
29
1_555
B
LEU
9
B
LEU
9
29
1_555
B
VAL
10
B
VAL
10
29
1_555
B
ALA
11
B
ALA
11
29
1_555
B
GLY
12
B
GLY
12
29
1_555
B
LYS
13
B
LYS
13
29
1_555
B
GLY
14
B
GLY
14
29
1_555
B
THR
15
B
THR
15
29
1_555
B
THR
31
B
THR
31
29
1_555
B
GLY
32
B
GLY
32
29
1_555
B
LEU
35
B
LEU
35
29
1_555
B
ARG
36
B
ARG
36
29
1_555
B
MET
53
B
MET
53
29
1_555
B
LYS
57
B
LYS
57
29
1_555
B
LEU
58
B
LEU
58
29
1_555
B
VAL
59
B
VAL
59
29
1_555
B
VAL
64
B
VAL
64
29
1_555
B
GLY
85
B
GLY
85
29
1_555
B
ARG
88
B
ARG
88
29
1_555
B
GLN
92
B
GLN
92
29
1_555
B
ARG
119
B
ARG
119
29
1_555
B
ARG
123
B
ARG
123
29
1_555
B
VAL
132
B
VAL
132
29
1_555
B
TYR
133
B
TYR
133
29
1_555
B
HIS
134
B
HIS
134
29
1_555
B
PHE
137
B
PHE
137
29
1_555
B
ARG
156
B
ARG
156
29
1_555
B
ARG
167
B
ARG
167
29
1_555
B
LYS
200
B
LYS
200
29
1_555
4
P 1 21 1