1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Simpson, P.J.
Hefang, X.
Bolam, D.N.
Gilbert, H.J.
Williamson, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
41137
10.1074/JBC.M006948200
10973978
The Structural Basis for the Ligand Specificity of Family 2 Carbohydrate Binding Nodules
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8687.275
XYLANASE D
3.2.1.8
XYLAN BINDING DOMAIN 1
YES
1
man
polymer
XBD1,ENDO-1,4-BETA-XYLANASE D
no
no
TGCSVTATRAEEWSDGFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKNGSSTTP
AATCAGS
TGCSVTATRAEEWSDGFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKNGSSTTP
AATCAGS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1708
CELLULOMONAS FIMI
562
ESCHERICHIA COLI
JM83
entity_src_gen
repository
Initial release
Version format compliance
Version format compliance
Data collection
Source and taxonomy
1
0
2001-05-25
1
1
2011-05-08
1
2
2011-07-13
1
3
2018-10-24
_entity_src_gen.gene_src_strain
INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, MINIMIZED AVERAGE STRUCTURE
INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, 5 STRUCTURES
INTERNAL XYLAN BINDING DOMAIN FROM C. FIMI XYN10A, R262G MUTANT
PDBE
Y
PDBE
2000-07-24
REL
CHAIN A MUTATION: R262G
THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR NMR SPECTROSCOPY ON A UNIFORMLY 15N-LABELLED SAMPLE OF XBD1 (R262G)
MINIMISED AVERAGE STRUCTURE
50
1
TOCSY
DQF-COSY
NOESY
E.COSY
HSQC
NOESY-HMQC
TOCSY-HMQC
HNHA
HNHB
5.0
pH
310
K
YASAP
HYBRID DISTANCE GEOMETRY/ SIMULATED ANNEALING
50MM SODIUM PHOSPHATE, 10MM AZIDE
BRUNGER
refinement
X-PLOR
3.1
structure solution
MSI FELIX
97.0
500
Bruker
DRX
600
Bruker
DRX
750
Bruker
DRX
THR
247
n
1
THR
247
A
GLY
248
n
2
GLY
248
A
CYS
249
n
3
CYS
249
A
SER
250
n
4
SER
250
A
VAL
251
n
5
VAL
251
A
THR
252
n
6
THR
252
A
ALA
253
n
7
ALA
253
A
THR
254
n
8
THR
254
A
ARG
255
n
9
ARG
255
A
ALA
256
n
10
ALA
256
A
GLU
257
n
11
GLU
257
A
GLU
258
n
12
GLU
258
A
TRP
259
n
13
TRP
259
A
SER
260
n
14
SER
260
A
ASP
261
n
15
ASP
261
A
GLY
262
n
16
GLY
262
A
PHE
263
n
17
PHE
263
A
ASN
264
n
18
ASN
264
A
VAL
265
n
19
VAL
265
A
THR
266
n
20
THR
266
A
TYR
267
n
21
TYR
267
A
SER
268
n
22
SER
268
A
VAL
269
n
23
VAL
269
A
SER
270
n
24
SER
270
A
GLY
271
n
25
GLY
271
A
SER
272
n
26
SER
272
A
SER
273
n
27
SER
273
A
ALA
274
n
28
ALA
274
A
TRP
275
n
29
TRP
275
A
THR
276
n
30
THR
276
A
VAL
277
n
31
VAL
277
A
ASN
278
n
32
ASN
278
A
LEU
279
n
33
LEU
279
A
ALA
280
n
34
ALA
280
A
LEU
281
n
35
LEU
281
A
ASN
282
n
36
ASN
282
A
GLY
283
n
37
GLY
283
A
SER
284
n
38
SER
284
A
GLN
285
n
39
GLN
285
A
THR
286
n
40
THR
286
A
ILE
287
n
41
ILE
287
A
GLN
288
n
42
GLN
288
A
ALA
289
n
43
ALA
289
A
SER
290
n
44
SER
290
A
TRP
291
n
45
TRP
291
A
ASN
292
n
46
ASN
292
A
ALA
293
n
47
ALA
293
A
ASN
294
n
48
ASN
294
A
VAL
295
n
49
VAL
295
A
THR
296
n
50
THR
296
A
GLY
297
n
51
GLY
297
A
SER
298
n
52
SER
298
A
GLY
299
n
53
GLY
299
A
SER
300
n
54
SER
300
A
THR
301
n
55
THR
301
A
ARG
302
n
56
ARG
302
A
THR
303
n
57
THR
303
A
VAL
304
n
58
VAL
304
A
THR
305
n
59
THR
305
A
PRO
306
n
60
PRO
306
A
ASN
307
n
61
ASN
307
A
GLY
308
n
62
GLY
308
A
SER
309
n
63
SER
309
A
GLY
310
n
64
GLY
310
A
ASN
311
n
65
ASN
311
A
THR
312
n
66
THR
312
A
PHE
313
n
67
PHE
313
A
GLY
314
n
68
GLY
314
A
VAL
315
n
69
VAL
315
A
THR
316
n
70
THR
316
A
VAL
317
n
71
VAL
317
A
MET
318
n
72
MET
318
A
LYS
319
n
73
LYS
319
A
ASN
320
n
74
ASN
320
A
GLY
321
n
75
GLY
321
A
SER
322
n
76
SER
322
A
SER
323
n
77
SER
323
A
THR
324
n
78
THR
324
A
THR
325
n
79
THR
325
A
PRO
326
n
80
PRO
326
A
ALA
327
n
81
ALA
327
A
ALA
328
n
82
ALA
328
A
THR
329
n
83
THR
329
A
CYS
330
n
84
CYS
330
A
ALA
331
n
85
ALA
331
A
GLY
332
n
86
GLY
332
A
SER
333
n
87
SER
333
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
254
A
O
THR
8
A
N
THR
266
A
N
THR
20
A
N
TYR
267
A
N
TYR
21
A
O
PHE
313
A
O
PHE
67
A
O
THR
316
A
O
THR
70
A
N
GLN
288
A
N
GLN
42
A
N
THR
296
A
N
THR
50
A
O
THR
303
A
O
THR
57
A
N
ARG
302
A
N
ARG
56
A
O
LEU
279
A
O
LEU
33
A
N
ALA
280
A
N
ALA
34
A
O
ALA
327
A
O
ALA
81
1
A
ARG
255
0.148
SIDE CHAIN
1
A
ARG
302
0.238
SIDE CHAIN
1
A
THR
254
-167.91
105.30
1
A
ALA
256
-101.37
-86.01
1
A
GLU
258
-170.43
146.90
1
A
SER
260
-82.98
41.95
1
A
ASP
261
-156.84
-37.79
1
A
GLN
285
-49.43
171.33
1
A
ALA
293
-176.32
147.06
1
A
SER
298
-170.46
68.87
1
A
SER
309
-155.83
23.06
1
A
MET
318
-61.56
88.36
1
A
ASN
320
38.57
45.77
XYLANASE D (E.C.3.2.1.8)
MINIMIZED AVERAGE
Internal xylan binding domain from C. fimi Xyn10A, R262G mutant
1
N
N
disulf
2.020
A
CYS
249
A
SG
CYS
3
1_555
A
CYS
330
A
SG
CYS
84
1_555
HYDROLASE
HYDROLASE, XYLAN BINDING DOMAIN, XYLANASE, BETA-SHEET
XYND_CELFI
UNP
1
P54865
247
333
1E5B
247
333
P54865
A
1
1
87
1
ARG
engineered mutation
GLY
262
1E5B
A
P54865
UNP
262
16
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
249
A
CYS
3
A
TRP
259
A
TRP
13
A
GLY
262
A
GLY
16
A
VAL
269
A
VAL
23
A
ASN
311
A
ASN
65
A
MET
318
A
MET
72
A
THR
286
A
THR
40
A
TRP
291
A
TRP
45
A
ASN
294
A
ASN
48
A
GLY
297
A
GLY
51
A
THR
301
A
THR
55
A
PRO
306
A
PRO
60
A
TRP
275
A
TRP
29
A
LEU
281
A
LEU
35
A
PRO
326
A
PRO
80
A
CYS
330
A
CYS
84
1
P 1