0.022894 0.000000 0.000000 0.000000 0.013904 0.000000 0.000000 0.000000 0.011211 0.00000 0.00000 0.00000 Owen, D.J. Travers, A.A. Evans, P.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 43.680 71.920 89.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C8 H16 N2 O3 188.224 n N(6)-ACETYLLYSINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 19 6141 10.1093/EMBOJ/19.22.6141 11080160 The Structural Basis for the Recognition of Acetylated Histone H4 by the Bromodomain of Histone Acetyltransferase Gcn5P 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 OSMIC MIRRORS IMAGE PLATE 2000-07-10 MARRESEARCH OSMIC MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 14406.266 TRANSCRIPTIONAL ACTIVATOR GCN5 BROMODOMAIN 1 man polymer LYSINE 16 IS ACETYLATED ON NZ 1837.202 HISTONE H4 ACETYLATED TAIL, RESIDUES 16-30 1 syn polymer 18.015 water 109 nat water no no AMANIAQRPKRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL VFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID AMANIAQRPKRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL VFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID A polypeptide(L) no yes A(ALY)RHRKILRNSIQGI AKRHRKILRNSIQGI P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample GCN5 4932 SACCHAROMYCES CEREVISIAE 562 ESCHERICHIA COLI PET30A 1 2.16 47 7.50 2.2M AMMONIUM SULPHATE, 20% V/V GLYCEROL, 4MM DITHIOTHREITOL, 100 MM HEPES PH 7.5, 125MM NACL 5:1 PEPTIDE:PROTEIN repository Initial release Atomic model Database references Derived calculations Non-polymer description Other Source and taxonomy Structure summary Version format compliance 1 0 2000-11-24 1 1 2012-11-28 HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAE PDBE Y PDBE 2000-08-18 REL HOH water 4932 SACCHAROMYCES CEREVISIAE sample HISTONE ACETYLTRANSFERASE (HAT) ACTION TO PROMOTE TRANSCRIPTIONAL ACTIVATION. BINDS PREFERENTIALLY TO LYSINE 14 OF H3 AND WITH A SOMEWHAT LOWER PREFERENCE TO LYSINES 8 AND 16 OF HISTONE H4. RESIDUES 319-324 (NOT VISIBLE) DERIVED FROM THE VECTOR K16 IS ACETYLATED HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2001 3 HOH HOH 2001 P HOH 2002 3 HOH HOH 2002 P HOH 2003 3 HOH HOH 2003 P HOH 2004 3 HOH HOH 2004 P HOH 2005 3 HOH HOH 2005 P HOH 2006 3 HOH HOH 2006 P HOH 2007 3 HOH HOH 2007 P HOH 2008 3 HOH HOH 2008 P HOH 2009 3 HOH HOH 2009 P HOH 2010 3 HOH HOH 2010 P n 1 319 A n 2 320 A n 3 321 A n 4 322 A n 5 323 A n 6 324 A n 7 325 A n 8 326 A n 9 327 A n 10 328 A ARG 329 n 11 ARG 329 A GLY 330 n 12 GLY 330 A PRO 331 n 13 PRO 331 A HIS 332 n 14 HIS 332 A ASP 333 n 15 ASP 333 A ALA 334 n 16 ALA 334 A ALA 335 n 17 ALA 335 A ILE 336 n 18 ILE 336 A GLN 337 n 19 GLN 337 A ASN 338 n 20 ASN 338 A ILE 339 n 21 ILE 339 A LEU 340 n 22 LEU 340 A THR 341 n 23 THR 341 A GLU 342 n 24 GLU 342 A LEU 343 n 25 LEU 343 A GLN 344 n 26 GLN 344 A ASN 345 n 27 ASN 345 A HIS 346 n 28 HIS 346 A ALA 347 n 29 ALA 347 A ALA 348 n 30 ALA 348 A ALA 349 n 31 ALA 349 A TRP 350 n 32 TRP 350 A PRO 351 n 33 PRO 351 A PHE 352 n 34 PHE 352 A LEU 353 n 35 LEU 353 A GLN 354 n 36 GLN 354 A PRO 355 n 37 PRO 355 A VAL 356 n 38 VAL 356 A ASN 357 n 39 ASN 357 A LYS 358 n 40 LYS 358 A GLU 359 n 41 GLU 359 A GLU 360 n 42 GLU 360 A VAL 361 n 43 VAL 361 A PRO 362 n 44 PRO 362 A ASP 363 n 45 ASP 363 A TYR 364 n 46 TYR 364 A TYR 365 n 47 TYR 365 A ASP 366 n 48 ASP 366 A PHE 367 n 49 PHE 367 A ILE 368 n 50 ILE 368 A LYS 369 n 51 LYS 369 A GLU 370 n 52 GLU 370 A PRO 371 n 53 PRO 371 A MET 372 n 54 MET 372 A ASP 373 n 55 ASP 373 A LEU 374 n 56 LEU 374 A SER 375 n 57 SER 375 A THR 376 n 58 THR 376 A MET 377 n 59 MET 377 A GLU 378 n 60 GLU 378 A ILE 379 n 61 ILE 379 A LYS 380 n 62 LYS 380 A LEU 381 n 63 LEU 381 A GLU 382 n 64 GLU 382 A SER 383 n 65 SER 383 A ASN 384 n 66 ASN 384 A LYS 385 n 67 LYS 385 A TYR 386 n 68 TYR 386 A GLN 387 n 69 GLN 387 A LYS 388 n 70 LYS 388 A MET 389 n 71 MET 389 A GLU 390 n 72 GLU 390 A ASP 391 n 73 ASP 391 A PHE 392 n 74 PHE 392 A ILE 393 n 75 ILE 393 A TYR 394 n 76 TYR 394 A ASP 395 n 77 ASP 395 A ALA 396 n 78 ALA 396 A ARG 397 n 79 ARG 397 A LEU 398 n 80 LEU 398 A VAL 399 n 81 VAL 399 A PHE 400 n 82 PHE 400 A ASN 401 n 83 ASN 401 A ASN 402 n 84 ASN 402 A CYS 403 n 85 CYS 403 A ARG 404 n 86 ARG 404 A MET 405 n 87 MET 405 A TYR 406 n 88 TYR 406 A ASN 407 n 89 ASN 407 A GLY 408 n 90 GLY 408 A GLU 409 n 91 GLU 409 A ASN 410 n 92 ASN 410 A THR 411 n 93 THR 411 A SER 412 n 94 SER 412 A TYR 413 n 95 TYR 413 A TYR 414 n 96 TYR 414 A LYS 415 n 97 LYS 415 A TYR 416 n 98 TYR 416 A ALA 417 n 99 ALA 417 A ASN 418 n 100 ASN 418 A ARG 419 n 101 ARG 419 A LEU 420 n 102 LEU 420 A GLU 421 n 103 GLU 421 A LYS 422 n 104 LYS 422 A PHE 423 n 105 PHE 423 A PHE 424 n 106 PHE 424 A ASN 425 n 107 ASN 425 A ASN 426 n 108 ASN 426 A LYS 427 n 109 LYS 427 A VAL 428 n 110 VAL 428 A LYS 429 n 111 LYS 429 A GLU 430 n 112 GLU 430 A ILE 431 n 113 ILE 431 A PRO 432 n 114 PRO 432 A GLU 433 n 115 GLU 433 A TYR 434 n 116 TYR 434 A SER 435 n 117 SER 435 A HIS 436 n 118 HIS 436 A LEU 437 n 119 LEU 437 A ILE 438 n 120 ILE 438 A ASP 439 n 121 ASP 439 A ALA 15 n 1 ALA 15 P ALY 16 n 2 ALY 16 P ARG 17 n 3 ARG 17 P HIS 18 n 4 HIS 18 P ARG 19 n 5 ARG 19 P LYS 20 n 6 LYS 20 P n 7 21 P n 8 22 P n 9 23 P n 10 24 P n 11 25 P n 12 26 P n 13 27 P n 14 28 P n 15 29 P software_defined_assembly PISA 2 dimeric 880 -4.5 7090 P ALY 16 N(6)-ACETYLLYSINE B ALY 2 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 2094 C HOH 1 A CA ASP 439 A CA ASP 121 1 Y 1 A C ASP 439 A C ASP 121 1 Y 1 A O ASP 439 A O ASP 121 1 Y 1 A CB ASP 439 A CB ASP 121 1 Y 1 A CG ASP 439 A CG ASP 121 1 Y 1 A OD1 ASP 439 A OD1 ASP 121 1 Y 1 A OD2 ASP 439 A OD2 ASP 121 1 Y 1 P CA LYS 20 B CA LYS 6 1 Y 1 P C LYS 20 B C LYS 6 1 Y 1 P O LYS 20 B O LYS 6 1 Y 1 P CB LYS 20 B CB LYS 6 1 Y 1 P CG LYS 20 B CG LYS 6 1 Y 1 P CD LYS 20 B CD LYS 6 1 Y 1 P CE LYS 20 B CE LYS 6 1 Y 1 P NZ LYS 20 B NZ LYS 6 1 Y 1 A ALA 319 A ALA 1 1 Y 1 A MET 320 A MET 2 1 Y 1 A ALA 321 A ALA 3 1 Y 1 A ASN 322 A ASN 4 1 Y 1 A ILE 323 A ILE 5 1 Y 1 A ALA 324 A ALA 6 1 Y 1 A GLN 325 A GLN 7 1 Y 1 A ARG 326 A ARG 8 1 Y 1 A PRO 327 A PRO 9 1 Y 1 A LYS 328 A LYS 10 1 Y 1 P ILE 21 B ILE 7 1 Y 1 P LEU 22 B LEU 8 1 Y 1 P ARG 23 B ARG 9 1 Y 1 P ASN 24 B ASN 10 1 Y 1 P SER 25 B SER 11 1 Y 1 P ILE 26 B ILE 12 1 Y 1 P GLN 27 B GLN 13 1 Y 1 P GLY 28 B GLY 14 1 Y 1 P ILE 29 B ILE 15 1 Y 1 A A O O HOH HOH 2007 2084 2.08 1 A A O O HOH HOH 2033 2045 2.11 1 P P NE2 O HIS HOH 18 2007 2.18 1 A TYR 386 -109.53 67.22 21 -1.0 0 0 0.40 0 0.6 REFMAC5 0.209 0.187 1.87 19 572 11944 4.8 99.8 8 0.24 RANDOM 1 THROUGHOUT 0.0 SIRAS 0.29 0.18 1.87 19 109 1090 0 0 981 0.016 0.021 3.9 3 2.3 4 3.6 6 3.4 5 5.3 8 0.006 0.02 0.094 0.200 0.31 0.3 27 1.870 19.100 1E6I 88913 0.07300 0.07300 1 24.5000 7.400 99.8 0.20400 1.87 1.98 8.700 0.20400 1 7.00 99.5 refinement REFMAC data reduction MOSFLM data scaling SCALA phasing SHARP TRANSCRIPTIONAL ACTIVATOR GCN5, HISTONE H4 Bromodomain from GCN5 complexed with acetylated H4 peptide 1 N N 2 N N 3 N N 3 N N A HIS 332 A HIS 14 HELX_P A HIS 346 A HIS 28 1 1 15 A ALA 349 A ALA 31 HELX_P A LEU 353 A LEU 35 5 2 5 A ASP 363 A ASP 45 HELX_P A ILE 368 A ILE 50 1 3 6 A ASP 373 A ASP 55 HELX_P A SER 383 A SER 65 1 4 11 A LYS 388 A LYS 70 HELX_P A ASN 407 A ASN 89 1 5 20 A THR 411 A THR 93 HELX_P A GLU 430 A GLU 112 1 6 20 A ILE 431 A ILE 113 HELX_P A ILE 438 A ILE 120 5 7 8 covale 1.323 P ALA 15 B C ALA 1 1_555 P ALY 16 B N ALY 2 1_555 covale 1.323 P ALY 16 B C ALY 2 1_555 P ARG 17 B N ARG 3 1_555 GENE REGULATION GENE REGULATION, HISTONE BINDING, N-ACETYL LYSINE GCN5_YEAST UNP 1 Q03330 H4_YEAST UNP 2 P02309 319 439 1E6I 319 439 Q03330 A 1 1 121 16 30 1E6I 15 29 P02309 P 2 1 15 1 GLU cloning artifact ALA 319 1E6I A Q03330 UNP 319 1 1 ASP cloning artifact ALA 321 1E6I A Q03330 UNP 321 3 1 ALA cloning artifact ASN 322 1E6I A Q03330 UNP 322 4 1 LEU cloning artifact ILE 323 1E6I A Q03330 UNP 323 5 2 ASP conflict ASN 24 1E6I P P02309 UNP 25 10 2 ASN conflict SER 25 1E6I P P02309 UNP 26 11 20 C 2 2 21