0.022894
0.000000
0.000000
0.000000
0.013904
0.000000
0.000000
0.000000
0.011211
0.00000
0.00000
0.00000
Owen, D.J.
Travers, A.A.
Evans, P.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.680
71.920
89.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C8 H16 N2 O3
188.224
n
N(6)-ACETYLLYSINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
19
6141
10.1093/EMBOJ/19.22.6141
11080160
The Structural Basis for the Recognition of Acetylated Histone H4 by the Bromodomain of Histone Acetyltransferase Gcn5P
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
OSMIC MIRRORS
IMAGE PLATE
2000-07-10
MARRESEARCH
OSMIC MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
14406.266
TRANSCRIPTIONAL ACTIVATOR GCN5
BROMODOMAIN
1
man
polymer
LYSINE 16 IS ACETYLATED ON NZ
1837.202
HISTONE H4
ACETYLATED TAIL, RESIDUES 16-30
1
syn
polymer
18.015
water
109
nat
water
no
no
AMANIAQRPKRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL
VFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID
AMANIAQRPKRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL
VFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID
A
polypeptide(L)
no
yes
A(ALY)RHRKILRNSIQGI
AKRHRKILRNSIQGI
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
GCN5
4932
SACCHAROMYCES CEREVISIAE
562
ESCHERICHIA COLI
PET30A
1
2.16
47
7.50
2.2M AMMONIUM SULPHATE, 20% V/V GLYCEROL, 4MM DITHIOTHREITOL, 100 MM HEPES PH 7.5, 125MM NACL 5:1 PEPTIDE:PROTEIN
repository
Initial release
Atomic model
Database references
Derived calculations
Non-polymer description
Other
Source and taxonomy
Structure summary
Version format compliance
1
0
2000-11-24
1
1
2012-11-28
HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAE
PDBE
Y
PDBE
2000-08-18
REL
HOH
water
4932
SACCHAROMYCES CEREVISIAE
sample
HISTONE ACETYLTRANSFERASE (HAT) ACTION TO PROMOTE
TRANSCRIPTIONAL ACTIVATION. BINDS PREFERENTIALLY TO
LYSINE 14 OF H3 AND WITH A SOMEWHAT LOWER PREFERENCE
TO LYSINES 8 AND 16 OF HISTONE H4.
RESIDUES 319-324 (NOT VISIBLE) DERIVED FROM THE VECTOR
K16 IS ACETYLATED
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2001
3
HOH
HOH
2001
P
HOH
2002
3
HOH
HOH
2002
P
HOH
2003
3
HOH
HOH
2003
P
HOH
2004
3
HOH
HOH
2004
P
HOH
2005
3
HOH
HOH
2005
P
HOH
2006
3
HOH
HOH
2006
P
HOH
2007
3
HOH
HOH
2007
P
HOH
2008
3
HOH
HOH
2008
P
HOH
2009
3
HOH
HOH
2009
P
HOH
2010
3
HOH
HOH
2010
P
n
1
319
A
n
2
320
A
n
3
321
A
n
4
322
A
n
5
323
A
n
6
324
A
n
7
325
A
n
8
326
A
n
9
327
A
n
10
328
A
ARG
329
n
11
ARG
329
A
GLY
330
n
12
GLY
330
A
PRO
331
n
13
PRO
331
A
HIS
332
n
14
HIS
332
A
ASP
333
n
15
ASP
333
A
ALA
334
n
16
ALA
334
A
ALA
335
n
17
ALA
335
A
ILE
336
n
18
ILE
336
A
GLN
337
n
19
GLN
337
A
ASN
338
n
20
ASN
338
A
ILE
339
n
21
ILE
339
A
LEU
340
n
22
LEU
340
A
THR
341
n
23
THR
341
A
GLU
342
n
24
GLU
342
A
LEU
343
n
25
LEU
343
A
GLN
344
n
26
GLN
344
A
ASN
345
n
27
ASN
345
A
HIS
346
n
28
HIS
346
A
ALA
347
n
29
ALA
347
A
ALA
348
n
30
ALA
348
A
ALA
349
n
31
ALA
349
A
TRP
350
n
32
TRP
350
A
PRO
351
n
33
PRO
351
A
PHE
352
n
34
PHE
352
A
LEU
353
n
35
LEU
353
A
GLN
354
n
36
GLN
354
A
PRO
355
n
37
PRO
355
A
VAL
356
n
38
VAL
356
A
ASN
357
n
39
ASN
357
A
LYS
358
n
40
LYS
358
A
GLU
359
n
41
GLU
359
A
GLU
360
n
42
GLU
360
A
VAL
361
n
43
VAL
361
A
PRO
362
n
44
PRO
362
A
ASP
363
n
45
ASP
363
A
TYR
364
n
46
TYR
364
A
TYR
365
n
47
TYR
365
A
ASP
366
n
48
ASP
366
A
PHE
367
n
49
PHE
367
A
ILE
368
n
50
ILE
368
A
LYS
369
n
51
LYS
369
A
GLU
370
n
52
GLU
370
A
PRO
371
n
53
PRO
371
A
MET
372
n
54
MET
372
A
ASP
373
n
55
ASP
373
A
LEU
374
n
56
LEU
374
A
SER
375
n
57
SER
375
A
THR
376
n
58
THR
376
A
MET
377
n
59
MET
377
A
GLU
378
n
60
GLU
378
A
ILE
379
n
61
ILE
379
A
LYS
380
n
62
LYS
380
A
LEU
381
n
63
LEU
381
A
GLU
382
n
64
GLU
382
A
SER
383
n
65
SER
383
A
ASN
384
n
66
ASN
384
A
LYS
385
n
67
LYS
385
A
TYR
386
n
68
TYR
386
A
GLN
387
n
69
GLN
387
A
LYS
388
n
70
LYS
388
A
MET
389
n
71
MET
389
A
GLU
390
n
72
GLU
390
A
ASP
391
n
73
ASP
391
A
PHE
392
n
74
PHE
392
A
ILE
393
n
75
ILE
393
A
TYR
394
n
76
TYR
394
A
ASP
395
n
77
ASP
395
A
ALA
396
n
78
ALA
396
A
ARG
397
n
79
ARG
397
A
LEU
398
n
80
LEU
398
A
VAL
399
n
81
VAL
399
A
PHE
400
n
82
PHE
400
A
ASN
401
n
83
ASN
401
A
ASN
402
n
84
ASN
402
A
CYS
403
n
85
CYS
403
A
ARG
404
n
86
ARG
404
A
MET
405
n
87
MET
405
A
TYR
406
n
88
TYR
406
A
ASN
407
n
89
ASN
407
A
GLY
408
n
90
GLY
408
A
GLU
409
n
91
GLU
409
A
ASN
410
n
92
ASN
410
A
THR
411
n
93
THR
411
A
SER
412
n
94
SER
412
A
TYR
413
n
95
TYR
413
A
TYR
414
n
96
TYR
414
A
LYS
415
n
97
LYS
415
A
TYR
416
n
98
TYR
416
A
ALA
417
n
99
ALA
417
A
ASN
418
n
100
ASN
418
A
ARG
419
n
101
ARG
419
A
LEU
420
n
102
LEU
420
A
GLU
421
n
103
GLU
421
A
LYS
422
n
104
LYS
422
A
PHE
423
n
105
PHE
423
A
PHE
424
n
106
PHE
424
A
ASN
425
n
107
ASN
425
A
ASN
426
n
108
ASN
426
A
LYS
427
n
109
LYS
427
A
VAL
428
n
110
VAL
428
A
LYS
429
n
111
LYS
429
A
GLU
430
n
112
GLU
430
A
ILE
431
n
113
ILE
431
A
PRO
432
n
114
PRO
432
A
GLU
433
n
115
GLU
433
A
TYR
434
n
116
TYR
434
A
SER
435
n
117
SER
435
A
HIS
436
n
118
HIS
436
A
LEU
437
n
119
LEU
437
A
ILE
438
n
120
ILE
438
A
ASP
439
n
121
ASP
439
A
ALA
15
n
1
ALA
15
P
ALY
16
n
2
ALY
16
P
ARG
17
n
3
ARG
17
P
HIS
18
n
4
HIS
18
P
ARG
19
n
5
ARG
19
P
LYS
20
n
6
LYS
20
P
n
7
21
P
n
8
22
P
n
9
23
P
n
10
24
P
n
11
25
P
n
12
26
P
n
13
27
P
n
14
28
P
n
15
29
P
software_defined_assembly
PISA
2
dimeric
880
-4.5
7090
P
ALY
16
N(6)-ACETYLLYSINE
B
ALY
2
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
2094
C
HOH
1
A
CA
ASP
439
A
CA
ASP
121
1
Y
1
A
C
ASP
439
A
C
ASP
121
1
Y
1
A
O
ASP
439
A
O
ASP
121
1
Y
1
A
CB
ASP
439
A
CB
ASP
121
1
Y
1
A
CG
ASP
439
A
CG
ASP
121
1
Y
1
A
OD1
ASP
439
A
OD1
ASP
121
1
Y
1
A
OD2
ASP
439
A
OD2
ASP
121
1
Y
1
P
CA
LYS
20
B
CA
LYS
6
1
Y
1
P
C
LYS
20
B
C
LYS
6
1
Y
1
P
O
LYS
20
B
O
LYS
6
1
Y
1
P
CB
LYS
20
B
CB
LYS
6
1
Y
1
P
CG
LYS
20
B
CG
LYS
6
1
Y
1
P
CD
LYS
20
B
CD
LYS
6
1
Y
1
P
CE
LYS
20
B
CE
LYS
6
1
Y
1
P
NZ
LYS
20
B
NZ
LYS
6
1
Y
1
A
ALA
319
A
ALA
1
1
Y
1
A
MET
320
A
MET
2
1
Y
1
A
ALA
321
A
ALA
3
1
Y
1
A
ASN
322
A
ASN
4
1
Y
1
A
ILE
323
A
ILE
5
1
Y
1
A
ALA
324
A
ALA
6
1
Y
1
A
GLN
325
A
GLN
7
1
Y
1
A
ARG
326
A
ARG
8
1
Y
1
A
PRO
327
A
PRO
9
1
Y
1
A
LYS
328
A
LYS
10
1
Y
1
P
ILE
21
B
ILE
7
1
Y
1
P
LEU
22
B
LEU
8
1
Y
1
P
ARG
23
B
ARG
9
1
Y
1
P
ASN
24
B
ASN
10
1
Y
1
P
SER
25
B
SER
11
1
Y
1
P
ILE
26
B
ILE
12
1
Y
1
P
GLN
27
B
GLN
13
1
Y
1
P
GLY
28
B
GLY
14
1
Y
1
P
ILE
29
B
ILE
15
1
Y
1
A
A
O
O
HOH
HOH
2007
2084
2.08
1
A
A
O
O
HOH
HOH
2033
2045
2.11
1
P
P
NE2
O
HIS
HOH
18
2007
2.18
1
A
TYR
386
-109.53
67.22
21
-1.0
0
0
0.40
0
0.6
REFMAC5
0.209
0.187
1.87
19
572
11944
4.8
99.8
8
0.24
RANDOM
1
THROUGHOUT
0.0
SIRAS
0.29
0.18
1.87
19
109
1090
0
0
981
0.016
0.021
3.9
3
2.3
4
3.6
6
3.4
5
5.3
8
0.006
0.02
0.094
0.200
0.31
0.3
27
1.870
19.100
1E6I
88913
0.07300
0.07300
1
24.5000
7.400
99.8
0.20400
1.87
1.98
8.700
0.20400
1
7.00
99.5
refinement
REFMAC
data reduction
MOSFLM
data scaling
SCALA
phasing
SHARP
TRANSCRIPTIONAL ACTIVATOR GCN5, HISTONE H4
Bromodomain from GCN5 complexed with acetylated H4 peptide
1
N
N
2
N
N
3
N
N
3
N
N
A
HIS
332
A
HIS
14
HELX_P
A
HIS
346
A
HIS
28
1
1
15
A
ALA
349
A
ALA
31
HELX_P
A
LEU
353
A
LEU
35
5
2
5
A
ASP
363
A
ASP
45
HELX_P
A
ILE
368
A
ILE
50
1
3
6
A
ASP
373
A
ASP
55
HELX_P
A
SER
383
A
SER
65
1
4
11
A
LYS
388
A
LYS
70
HELX_P
A
ASN
407
A
ASN
89
1
5
20
A
THR
411
A
THR
93
HELX_P
A
GLU
430
A
GLU
112
1
6
20
A
ILE
431
A
ILE
113
HELX_P
A
ILE
438
A
ILE
120
5
7
8
covale
1.323
P
ALA
15
B
C
ALA
1
1_555
P
ALY
16
B
N
ALY
2
1_555
covale
1.323
P
ALY
16
B
C
ALY
2
1_555
P
ARG
17
B
N
ARG
3
1_555
GENE REGULATION
GENE REGULATION, HISTONE BINDING, N-ACETYL LYSINE
GCN5_YEAST
UNP
1
Q03330
H4_YEAST
UNP
2
P02309
319
439
1E6I
319
439
Q03330
A
1
1
121
16
30
1E6I
15
29
P02309
P
2
1
15
1
GLU
cloning artifact
ALA
319
1E6I
A
Q03330
UNP
319
1
1
ASP
cloning artifact
ALA
321
1E6I
A
Q03330
UNP
321
3
1
ALA
cloning artifact
ASN
322
1E6I
A
Q03330
UNP
322
4
1
LEU
cloning artifact
ILE
323
1E6I
A
Q03330
UNP
323
5
2
ASP
conflict
ASN
24
1E6I
P
P02309
UNP
25
10
2
ASN
conflict
SER
25
1E6I
P
P02309
UNP
26
11
20
C 2 2 21