0.005179
0.000000
0.004731
0.000000
0.021930
0.000000
0.000000
0.000000
0.010224
0.00000
0.00000
0.00000
Berthet-Colominas, C.
Monaco, S.
Novelli, A.
Sibai, G.
Mallet, F.
Cusack, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
132.41
90.00
193.080
45.600
132.470
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Structure
STRUE6
2005
0969-2126
8
1069
10.1016/S0969-2126(00)00507-4
11080628
Mutual Conformational Adaptations in Antigen and Antibody Upon Complex Formation between an Fab and HIV-1 Capsid Protein P24
2000
UK
Embo J.
EMJODG
0897
0261-4189
18
1124
10.1093/EMBOJ/18.5.1124
10064580
Head-to-Tail Dimers and Interdomain Flexibility Revealed by the Crystal Structure of HIV-1 Capsid Protein (P24) Complexed with a Monoclonal Antibody Fab
1999
US
Protein Expr.Purif.
PEXPEJ
0757
1046-5928
4
367
10.1006/PREP.1993.1048
8251747
Overexpression of HIV-1 Proteins in E. Coli by a Modified Expression Vector and Their One-Step Purification
1993
10.2210/pdb1e6j/pdb
pdb_00001e6j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1998-01-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.945
1.0
ID14-3
ESRF
0.945
SYNCHROTRON
ESRF BEAMLINE ID14-3
OBTAINED BY PAPAIN CLEAVAGE (FAB)
23552.301
IMMUNOGLOBULIN
HEAVY CHAIN 1-219
1
nat
polymer
OBTAINED BY PAPAIN CLEAVAGE (FAB)
23053.477
IMMUNOGLOBULIN
LIGHT CHAIN 1-210
1
nat
polymer
HIS6 TAG AT N-TERM, PRO1 AND ILE2 DELETED, C-TERMINUS MODIFIED
23421.795
CAPSID PROTEIN P24
GAG POLYPROTEIN RESIDUES 143-352
1
man
polymer
CA
no
no
EVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSSGYSNYNQKFKDKATLTADKSSSTAY
MQLSSLTSEDSAVYYCSRPVVRLGYNFDYWGQGSTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
EVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSSGYSNYNQKFKDKATLTADKSSSTAY
MQLSSLTSEDSAVYYCSRPVVRLGYNFDYWGQGSTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
H
polypeptide(L)
no
no
EIVLTQSPAITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIYEISKLASGVPARFSGSGSGTSYSLTISSMEAE
DAAIYYCQQWNYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS
WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
EIVLTQSPAITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIYEISKLASGVPARFSGSGSGTSYSLTISSMEAE
DAAIYYCQQWNYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS
WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
L
polypeptide(L)
no
no
VHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGP
IAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYK
TLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQG
VHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGP
IAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYK
TLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQG
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
SEE REFERENCE 2
11706
HIV-1 M\:B_HXB2R
CLONE 12
562
ESCHERICHIA COLI
HOUSE MOUSE
sample
10090
MUS MUSCULUS
HOUSE MOUSE
sample
10090
MUS MUSCULUS
1
3.07
58.6
PATTERSON CORRELATION ALGORITHM OF XPLOR USED IN CONJUNCTION WITH AMORE
VAPOR DIFFUSION, HANGING DROP
7.50
PROTEIN AT 7MG/ML IN 7% PEG8000, 0.1M TRIS-HCL PH=7.5, 5MM DTT, 0.5MM K2PTCL4 AT 4C USING THE HANGING DROP SYSTEM, pH 7.50
277
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
exptl_crystal_grow
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
repository
Initial release
Database references
Derived calculations
Other
Source and taxonomy
Structure summary
Version format compliance
Advisory
Data collection
Experimental preparation
Other
Data collection
Experimental preparation
Advisory
Data collection
Database references
Other
Refinement description
1
0
2000-11-27
1
1
2014-03-12
1
2
2019-05-08
1
3
2019-05-15
1
4
2023-12-13
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_exptl_crystal_grow.temp
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
HIV CAPSID C-TERMINAL DOMAIN
HUMAN IMMUNODEFICIENCY VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE
SOLUTION STRUCTURE OF NCP7 FROM HIV-1
CRYSTAL STRUCTURE OF FAB13B5 AGAINST HIV-1 CAPSID PROTEIN P24
PDBE
Y
PDBE
2000-08-18
REL
REL
1AFV
FAB13B5, 1AFV, 1AM3
PDB
experimental model
1AM3
FAB13B5, 1AFV, 1AM3
PDB
experimental model
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
ALA
12
n
12
ALA
12
H
ARG
13
n
13
ARG
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
MET
20
n
20
MET
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
TYR
32
n
32
TYR
32
H
THR
33
n
33
THR
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
TYR
50
n
50
TYR
50
H
ILE
51
n
51
ILE
51
H
ASN
52
n
52
ASN
52
H
PRO
53
n
53
PRO
53
H
SER
54
n
54
SER
54
H
SER
55
n
55
SER
55
H
GLY
56
n
56
GLY
56
H
TYR
57
n
57
TYR
57
H
SER
58
n
58
SER
58
H
ASN
59
n
59
ASN
59
H
TYR
60
n
60
TYR
60
H
ASN
61
n
61
ASN
61
H
GLN
62
n
62
GLN
62
H
LYS
63
n
63
LYS
63
H
PHE
64
n
64
PHE
64
H
LYS
65
n
65
LYS
65
H
ASP
66
n
66
ASP
66
H
LYS
67
n
67
LYS
67
H
ALA
68
n
68
ALA
68
H
THR
69
n
69
THR
69
H
LEU
70
n
70
LEU
70
H
THR
71
n
71
THR
71
H
ALA
72
n
72
ALA
72
H
ASP
73
n
73
ASP
73
H
LYS
74
n
74
LYS
74
H
SER
75
n
75
SER
75
H
SER
76
n
76
SER
76
H
SER
77
n
77
SER
77
H
THR
78
n
78
THR
78
H
ALA
79
n
79
ALA
79
H
TYR
80
n
80
TYR
80
H
MET
81
n
81
MET
81
H
GLN
82
n
82
GLN
82
H
LEU
83
n
83
LEU
83
H
SER
84
n
84
SER
84
H
SER
85
n
85
SER
85
H
LEU
86
n
86
LEU
86
H
THR
87
n
87
THR
87
H
SER
88
n
88
SER
88
H
GLU
89
n
89
GLU
89
H
ASP
90
n
90
ASP
90
H
SER
91
n
91
SER
91
H
ALA
92
n
92
ALA
92
H
VAL
93
n
93
VAL
93
H
TYR
94
n
94
TYR
94
H
TYR
95
n
95
TYR
95
H
CYS
96
n
96
CYS
96
H
SER
97
n
97
SER
97
H
ARG
98
n
98
ARG
98
H
PRO
99
n
99
PRO
99
H
VAL
100
n
100
VAL
100
H
VAL
101
n
101
VAL
101
H
ARG
102
n
102
ARG
102
H
LEU
103
n
103
LEU
103
H
GLY
104
n
104
GLY
104
H
TYR
105
n
105
TYR
105
H
ASN
106
n
106
ASN
106
H
PHE
107
n
107
PHE
107
H
ASP
108
n
108
ASP
108
H
TYR
109
n
109
TYR
109
H
TRP
110
n
110
TRP
110
H
GLY
111
n
111
GLY
111
H
GLN
112
n
112
GLN
112
H
GLY
113
n
113
GLY
113
H
SER
114
n
114
SER
114
H
THR
115
n
115
THR
115
H
LEU
116
n
116
LEU
116
H
THR
117
n
117
THR
117
H
VAL
118
n
118
VAL
118
H
SER
119
n
119
SER
119
H
SER
120
n
120
SER
120
H
ALA
121
n
121
ALA
121
H
LYS
122
n
122
LYS
122
H
THR
123
n
123
THR
123
H
THR
124
n
124
THR
124
H
PRO
125
n
125
PRO
125
H
PRO
126
n
126
PRO
126
H
SER
127
n
127
SER
127
H
VAL
128
n
128
VAL
128
H
TYR
129
n
129
TYR
129
H
PRO
130
n
130
PRO
130
H
LEU
131
n
131
LEU
131
H
ALA
132
n
132
ALA
132
H
PRO
133
n
133
PRO
133
H
GLY
134
n
134
GLY
134
H
SER
135
n
135
SER
135
H
ALA
136
n
136
ALA
136
H
ALA
137
n
137
ALA
137
H
GLN
138
n
138
GLN
138
H
THR
139
n
139
THR
139
H
ASN
140
n
140
ASN
140
H
SER
141
n
141
SER
141
H
MET
142
n
142
MET
142
H
VAL
143
n
143
VAL
143
H
THR
144
n
144
THR
144
H
LEU
145
n
145
LEU
145
H
GLY
146
n
146
GLY
146
H
CYS
147
n
147
CYS
147
H
LEU
148
n
148
LEU
148
H
VAL
149
n
149
VAL
149
H
LYS
150
n
150
LYS
150
H
GLY
151
n
151
GLY
151
H
TYR
152
n
152
TYR
152
H
PHE
153
n
153
PHE
153
H
PRO
154
n
154
PRO
154
H
GLU
155
n
155
GLU
155
H
PRO
156
n
156
PRO
156
H
VAL
157
n
157
VAL
157
H
THR
158
n
158
THR
158
H
VAL
159
n
159
VAL
159
H
THR
160
n
160
THR
160
H
TRP
161
n
161
TRP
161
H
ASN
162
n
162
ASN
162
H
SER
163
n
163
SER
163
H
GLY
164
n
164
GLY
164
H
SER
165
n
165
SER
165
H
LEU
166
n
166
LEU
166
H
SER
167
n
167
SER
167
H
SER
168
n
168
SER
168
H
GLY
169
n
169
GLY
169
H
VAL
170
n
170
VAL
170
H
HIS
171
n
171
HIS
171
H
THR
172
n
172
THR
172
H
PHE
173
n
173
PHE
173
H
PRO
174
n
174
PRO
174
H
ALA
175
n
175
ALA
175
H
VAL
176
n
176
VAL
176
H
LEU
177
n
177
LEU
177
H
GLN
178
n
178
GLN
178
H
SER
179
n
179
SER
179
H
ASP
180
n
180
ASP
180
H
LEU
181
n
181
LEU
181
H
TYR
182
n
182
TYR
182
H
THR
183
n
183
THR
183
H
LEU
184
n
184
LEU
184
H
SER
185
n
185
SER
185
H
SER
186
n
186
SER
186
H
SER
187
n
187
SER
187
H
VAL
188
n
188
VAL
188
H
THR
189
n
189
THR
189
H
VAL
190
n
190
VAL
190
H
PRO
191
n
191
PRO
191
H
SER
192
n
192
SER
192
H
SER
193
n
193
SER
193
H
THR
194
n
194
THR
194
H
TRP
195
n
195
TRP
195
H
PRO
196
n
196
PRO
196
H
SER
197
n
197
SER
197
H
GLU
198
n
198
GLU
198
H
THR
199
n
199
THR
199
H
VAL
200
n
200
VAL
200
H
THR
201
n
201
THR
201
H
CYS
202
n
202
CYS
202
H
ASN
203
n
203
ASN
203
H
VAL
204
n
204
VAL
204
H
ALA
205
n
205
ALA
205
H
HIS
206
n
206
HIS
206
H
PRO
207
n
207
PRO
207
H
ALA
208
n
208
ALA
208
H
SER
209
n
209
SER
209
H
SER
210
n
210
SER
210
H
THR
211
n
211
THR
211
H
LYS
212
n
212
LYS
212
H
VAL
213
n
213
VAL
213
H
ASP
214
n
214
ASP
214
H
LYS
215
n
215
LYS
215
H
LYS
216
n
216
LYS
216
H
ILE
217
n
217
ILE
217
H
VAL
218
n
218
VAL
218
H
PRO
219
n
219
PRO
219
H
GLU
1
n
1
GLU
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
ILE
10
n
10
ILE
10
L
THR
11
n
11
THR
11
L
ALA
12
n
12
ALA
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
LYS
18
n
18
LYS
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
SER
24
n
24
SER
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
SER
27
n
27
SER
27
L
SER
28
n
28
SER
28
L
VAL
29
n
29
VAL
29
L
SER
30
n
30
SER
30
L
TYR
31
n
31
TYR
31
L
MET
32
n
32
MET
32
L
HIS
33
n
33
HIS
33
L
TRP
34
n
34
TRP
34
L
TYR
35
n
35
TYR
35
L
GLN
36
n
36
GLN
36
L
GLN
37
n
37
GLN
37
L
LYS
38
n
38
LYS
38
L
SER
39
n
39
SER
39
L
GLY
40
n
40
GLY
40
L
THR
41
n
41
THR
41
L
SER
42
n
42
SER
42
L
PRO
43
n
43
PRO
43
L
LYS
44
n
44
LYS
44
L
PRO
45
n
45
PRO
45
L
TRP
46
n
46
TRP
46
L
ILE
47
n
47
ILE
47
L
TYR
48
n
48
TYR
48
L
GLU
49
n
49
GLU
49
L
ILE
50
n
50
ILE
50
L
SER
51
n
51
SER
51
L
LYS
52
n
52
LYS
52
L
LEU
53
n
53
LEU
53
L
ALA
54
n
54
ALA
54
L
SER
55
n
55
SER
55
L
GLY
56
n
56
GLY
56
L
VAL
57
n
57
VAL
57
L
PRO
58
n
58
PRO
58
L
ALA
59
n
59
ALA
59
L
ARG
60
n
60
ARG
60
L
PHE
61
n
61
PHE
61
L
SER
62
n
62
SER
62
L
GLY
63
n
63
GLY
63
L
SER
64
n
64
SER
64
L
GLY
65
n
65
GLY
65
L
SER
66
n
66
SER
66
L
GLY
67
n
67
GLY
67
L
THR
68
n
68
THR
68
L
SER
69
n
69
SER
69
L
TYR
70
n
70
TYR
70
L
SER
71
n
71
SER
71
L
LEU
72
n
72
LEU
72
L
THR
73
n
73
THR
73
L
ILE
74
n
74
ILE
74
L
SER
75
n
75
SER
75
L
SER
76
n
76
SER
76
L
MET
77
n
77
MET
77
L
GLU
78
n
78
GLU
78
L
ALA
79
n
79
ALA
79
L
GLU
80
n
80
GLU
80
L
ASP
81
n
81
ASP
81
L
ALA
82
n
82
ALA
82
L
ALA
83
n
83
ALA
83
L
ILE
84
n
84
ILE
84
L
TYR
85
n
85
TYR
85
L
TYR
86
n
86
TYR
86
L
CYS
87
n
87
CYS
87
L
GLN
88
n
88
GLN
88
L
GLN
89
n
89
GLN
89
L
TRP
90
n
90
TRP
90
L
ASN
91
n
91
ASN
91
L
TYR
92
n
92
TYR
92
L
PRO
93
n
93
PRO
93
L
PHE
94
n
94
PHE
94
L
THR
95
n
95
THR
95
L
PHE
96
n
96
PHE
96
L
GLY
97
n
97
GLY
97
L
SER
98
n
98
SER
98
L
GLY
99
n
99
GLY
99
L
THR
100
n
100
THR
100
L
LYS
101
n
101
LYS
101
L
LEU
102
n
102
LEU
102
L
GLU
103
n
103
GLU
103
L
ILE
104
n
104
ILE
104
L
LYS
105
n
105
LYS
105
L
ARG
106
n
106
ARG
106
L
ALA
107
n
107
ALA
107
L
ASP
108
n
108
ASP
108
L
ALA
109
n
109
ALA
109
L
ALA
110
n
110
ALA
110
L
PRO
111
n
111
PRO
111
L
THR
112
n
112
THR
112
L
VAL
113
n
113
VAL
113
L
SER
114
n
114
SER
114
L
ILE
115
n
115
ILE
115
L
PHE
116
n
116
PHE
116
L
PRO
117
n
117
PRO
117
L
PRO
118
n
118
PRO
118
L
SER
119
n
119
SER
119
L
SER
120
n
120
SER
120
L
GLU
121
n
121
GLU
121
L
GLN
122
n
122
GLN
122
L
LEU
123
n
123
LEU
123
L
THR
124
n
124
THR
124
L
SER
125
n
125
SER
125
L
GLY
126
n
126
GLY
126
L
GLY
127
n
127
GLY
127
L
ALA
128
n
128
ALA
128
L
SER
129
n
129
SER
129
L
VAL
130
n
130
VAL
130
L
VAL
131
n
131
VAL
131
L
CYS
132
n
132
CYS
132
L
PHE
133
n
133
PHE
133
L
LEU
134
n
134
LEU
134
L
ASN
135
n
135
ASN
135
L
ASN
136
n
136
ASN
136
L
PHE
137
n
137
PHE
137
L
TYR
138
n
138
TYR
138
L
PRO
139
n
139
PRO
139
L
LYS
140
n
140
LYS
140
L
ASP
141
n
141
ASP
141
L
ILE
142
n
142
ILE
142
L
ASN
143
n
143
ASN
143
L
VAL
144
n
144
VAL
144
L
LYS
145
n
145
LYS
145
L
TRP
146
n
146
TRP
146
L
LYS
147
n
147
LYS
147
L
ILE
148
n
148
ILE
148
L
ASP
149
n
149
ASP
149
L
GLY
150
n
150
GLY
150
L
SER
151
n
151
SER
151
L
GLU
152
n
152
GLU
152
L
ARG
153
n
153
ARG
153
L
GLN
154
n
154
GLN
154
L
ASN
155
n
155
ASN
155
L
GLY
156
n
156
GLY
156
L
VAL
157
n
157
VAL
157
L
LEU
158
n
158
LEU
158
L
ASN
159
n
159
ASN
159
L
SER
160
n
160
SER
160
L
TRP
161
n
161
TRP
161
L
THR
162
n
162
THR
162
L
ASP
163
n
163
ASP
163
L
GLN
164
n
164
GLN
164
L
ASP
165
n
165
ASP
165
L
SER
166
n
166
SER
166
L
LYS
167
n
167
LYS
167
L
ASP
168
n
168
ASP
168
L
SER
169
n
169
SER
169
L
THR
170
n
170
THR
170
L
TYR
171
n
171
TYR
171
L
SER
172
n
172
SER
172
L
MET
173
n
173
MET
173
L
SER
174
n
174
SER
174
L
SER
175
n
175
SER
175
L
THR
176
n
176
THR
176
L
LEU
177
n
177
LEU
177
L
THR
178
n
178
THR
178
L
LEU
179
n
179
LEU
179
L
THR
180
n
180
THR
180
L
LYS
181
n
181
LYS
181
L
ASP
182
n
182
ASP
182
L
GLU
183
n
183
GLU
183
L
TYR
184
n
184
TYR
184
L
GLU
185
n
185
GLU
185
L
ARG
186
n
186
ARG
186
L
HIS
187
n
187
HIS
187
L
ASN
188
n
188
ASN
188
L
SER
189
n
189
SER
189
L
TYR
190
n
190
TYR
190
L
THR
191
n
191
THR
191
L
CYS
192
n
192
CYS
192
L
GLU
193
n
193
GLU
193
L
ALA
194
n
194
ALA
194
L
THR
195
n
195
THR
195
L
HIS
196
n
196
HIS
196
L
LYS
197
n
197
LYS
197
L
THR
198
n
198
THR
198
L
SER
199
n
199
SER
199
L
THR
200
n
200
THR
200
L
SER
201
n
201
SER
201
L
PRO
202
n
202
PRO
202
L
ILE
203
n
203
ILE
203
L
VAL
204
n
204
VAL
204
L
LYS
205
n
205
LYS
205
L
SER
206
n
206
SER
206
L
PHE
207
n
207
PHE
207
L
ASN
208
n
208
ASN
208
L
ARG
209
n
209
ARG
209
L
ASN
210
n
210
ASN
210
L
VAL
11
n
1
VAL
11
P
HIS
12
n
2
HIS
12
P
GLN
13
n
3
GLN
13
P
ALA
14
n
4
ALA
14
P
ILE
15
n
5
ILE
15
P
SER
16
n
6
SER
16
P
PRO
17
n
7
PRO
17
P
ARG
18
n
8
ARG
18
P
THR
19
n
9
THR
19
P
LEU
20
n
10
LEU
20
P
ASN
21
n
11
ASN
21
P
ALA
22
n
12
ALA
22
P
TRP
23
n
13
TRP
23
P
VAL
24
n
14
VAL
24
P
LYS
25
n
15
LYS
25
P
VAL
26
n
16
VAL
26
P
VAL
27
n
17
VAL
27
P
GLU
28
n
18
GLU
28
P
GLU
29
n
19
GLU
29
P
LYS
30
n
20
LYS
30
P
ALA
31
n
21
ALA
31
P
PHE
32
n
22
PHE
32
P
SER
33
n
23
SER
33
P
PRO
34
n
24
PRO
34
P
GLU
35
n
25
GLU
35
P
VAL
36
n
26
VAL
36
P
ILE
37
n
27
ILE
37
P
PRO
38
n
28
PRO
38
P
MET
39
n
29
MET
39
P
PHE
40
n
30
PHE
40
P
SER
41
n
31
SER
41
P
ALA
42
n
32
ALA
42
P
LEU
43
n
33
LEU
43
P
SER
44
n
34
SER
44
P
GLU
45
n
35
GLU
45
P
GLY
46
n
36
GLY
46
P
ALA
47
n
37
ALA
47
P
THR
48
n
38
THR
48
P
PRO
49
n
39
PRO
49
P
GLN
50
n
40
GLN
50
P
ASP
51
n
41
ASP
51
P
LEU
52
n
42
LEU
52
P
ASN
53
n
43
ASN
53
P
THR
54
n
44
THR
54
P
MET
55
n
45
MET
55
P
LEU
56
n
46
LEU
56
P
ASN
57
n
47
ASN
57
P
THR
58
n
48
THR
58
P
VAL
59
n
49
VAL
59
P
GLY
60
n
50
GLY
60
P
GLY
61
n
51
GLY
61
P
HIS
62
n
52
HIS
62
P
GLN
63
n
53
GLN
63
P
ALA
64
n
54
ALA
64
P
ALA
65
n
55
ALA
65
P
MET
66
n
56
MET
66
P
GLN
67
n
57
GLN
67
P
MET
68
n
58
MET
68
P
LEU
69
n
59
LEU
69
P
LYS
70
n
60
LYS
70
P
GLU
71
n
61
GLU
71
P
THR
72
n
62
THR
72
P
ILE
73
n
63
ILE
73
P
ASN
74
n
64
ASN
74
P
GLU
75
n
65
GLU
75
P
GLU
76
n
66
GLU
76
P
ALA
77
n
67
ALA
77
P
ALA
78
n
68
ALA
78
P
GLU
79
n
69
GLU
79
P
TRP
80
n
70
TRP
80
P
ASP
81
n
71
ASP
81
P
ARG
82
n
72
ARG
82
P
VAL
83
n
73
VAL
83
P
HIS
84
n
74
HIS
84
P
PRO
85
n
75
PRO
85
P
VAL
86
n
76
VAL
86
P
HIS
87
n
77
HIS
87
P
ALA
88
n
78
ALA
88
P
GLY
89
n
79
GLY
89
P
PRO
90
n
80
PRO
90
P
ILE
91
n
81
ILE
91
P
ALA
92
n
82
ALA
92
P
PRO
93
n
83
PRO
93
P
GLY
94
n
84
GLY
94
P
GLN
95
n
85
GLN
95
P
MET
96
n
86
MET
96
P
ARG
97
n
87
ARG
97
P
GLU
98
n
88
GLU
98
P
PRO
99
n
89
PRO
99
P
ARG
100
n
90
ARG
100
P
GLY
101
n
91
GLY
101
P
SER
102
n
92
SER
102
P
ASP
103
n
93
ASP
103
P
ILE
104
n
94
ILE
104
P
ALA
105
n
95
ALA
105
P
GLY
106
n
96
GLY
106
P
THR
107
n
97
THR
107
P
THR
108
n
98
THR
108
P
SER
109
n
99
SER
109
P
THR
110
n
100
THR
110
P
LEU
111
n
101
LEU
111
P
GLN
112
n
102
GLN
112
P
GLU
113
n
103
GLU
113
P
GLN
114
n
104
GLN
114
P
ILE
115
n
105
ILE
115
P
GLY
116
n
106
GLY
116
P
TRP
117
n
107
TRP
117
P
MET
118
n
108
MET
118
P
THR
119
n
109
THR
119
P
ASN
120
n
110
ASN
120
P
ASN
121
n
111
ASN
121
P
PRO
122
n
112
PRO
122
P
PRO
123
n
113
PRO
123
P
ILE
124
n
114
ILE
124
P
PRO
125
n
115
PRO
125
P
VAL
126
n
116
VAL
126
P
GLY
127
n
117
GLY
127
P
GLU
128
n
118
GLU
128
P
ILE
129
n
119
ILE
129
P
TYR
130
n
120
TYR
130
P
LYS
131
n
121
LYS
131
P
ARG
132
n
122
ARG
132
P
TRP
133
n
123
TRP
133
P
ILE
134
n
124
ILE
134
P
ILE
135
n
125
ILE
135
P
LEU
136
n
126
LEU
136
P
GLY
137
n
127
GLY
137
P
LEU
138
n
128
LEU
138
P
ASN
139
n
129
ASN
139
P
LYS
140
n
130
LYS
140
P
ILE
141
n
131
ILE
141
P
VAL
142
n
132
VAL
142
P
ARG
143
n
133
ARG
143
P
MET
144
n
134
MET
144
P
TYR
145
n
135
TYR
145
P
SER
146
n
136
SER
146
P
PRO
147
n
137
PRO
147
P
THR
148
n
138
THR
148
P
SER
149
n
139
SER
149
P
ILE
150
n
140
ILE
150
P
LEU
151
n
141
LEU
151
P
ASP
152
n
142
ASP
152
P
ILE
153
n
143
ILE
153
P
ARG
154
n
144
ARG
154
P
GLN
155
n
145
GLN
155
P
GLY
156
n
146
GLY
156
P
PRO
157
n
147
PRO
157
P
LYS
158
n
148
LYS
158
P
GLU
159
n
149
GLU
159
P
PRO
160
n
150
PRO
160
P
PHE
161
n
151
PHE
161
P
ARG
162
n
152
ARG
162
P
ASP
163
n
153
ASP
163
P
TYR
164
n
154
TYR
164
P
VAL
165
n
155
VAL
165
P
ASP
166
n
156
ASP
166
P
ARG
167
n
157
ARG
167
P
PHE
168
n
158
PHE
168
P
TYR
169
n
159
TYR
169
P
LYS
170
n
160
LYS
170
P
THR
171
n
161
THR
171
P
LEU
172
n
162
LEU
172
P
ARG
173
n
163
ARG
173
P
ALA
174
n
164
ALA
174
P
GLU
175
n
165
GLU
175
P
GLN
176
n
166
GLN
176
P
ALA
177
n
167
ALA
177
P
SER
178
n
168
SER
178
P
GLN
179
n
169
GLN
179
P
GLU
180
n
170
GLU
180
P
VAL
181
n
171
VAL
181
P
LYS
182
n
172
LYS
182
P
ASN
183
n
173
ASN
183
P
TRP
184
n
174
TRP
184
P
MET
185
n
175
MET
185
P
THR
186
n
176
THR
186
P
GLU
187
n
177
GLU
187
P
THR
188
n
178
THR
188
P
LEU
189
n
179
LEU
189
P
LEU
190
n
180
LEU
190
P
VAL
191
n
181
VAL
191
P
GLN
192
n
182
GLN
192
P
ASN
193
n
183
ASN
193
P
ALA
194
n
184
ALA
194
P
ASN
195
n
185
ASN
195
P
PRO
196
n
186
PRO
196
P
ASP
197
n
187
ASP
197
P
CYS
198
n
188
CYS
198
P
LYS
199
n
189
LYS
199
P
THR
200
n
190
THR
200
P
ILE
201
n
191
ILE
201
P
LEU
202
n
192
LEU
202
P
LYS
203
n
193
LYS
203
P
ALA
204
n
194
ALA
204
P
LEU
205
n
195
LEU
205
P
GLY
206
n
196
GLY
206
P
PRO
207
n
197
PRO
207
P
ALA
208
n
198
ALA
208
P
ALA
209
n
199
ALA
209
P
THR
210
n
200
THR
210
P
LEU
211
n
201
LEU
211
P
GLU
212
n
202
GLU
212
P
GLU
213
n
203
GLU
213
P
MET
214
n
204
MET
214
P
MET
215
n
205
MET
215
P
THR
216
n
206
THR
216
P
ALA
217
n
207
ALA
217
P
CYS
218
n
208
CYS
218
P
GLN
219
n
209
GLN
219
P
GLY
220
n
210
GLY
220
P
software_defined_assembly
PQS
3
trimeric
5550
-41.4
39220
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
GLN
3
A
O
GLN
3
H
N
SER
25
A
N
SER
25
H
O
VAL
18
A
O
VAL
18
H
N
LEU
83
A
N
LEU
83
H
O
THR
78
A
O
THR
78
H
N
ASP
73
A
N
ASP
73
H
O
GLU
10
A
O
GLU
10
H
N
THR
117
A
N
THR
117
H
O
SER
114
A
O
SER
114
H
N
TYR
94
A
N
TYR
94
H
O
VAL
93
A
O
VAL
93
H
N
GLN
39
A
N
GLN
39
H
O
MET
34
A
O
MET
34
H
N
ILE
51
A
N
ILE
51
H
O
TYR
50
A
O
TYR
50
H
N
ASN
59
A
N
ASN
59
H
O
SER
127
A
O
SER
127
H
N
LYS
150
A
N
LYS
150
H
O
VAL
143
A
O
VAL
143
H
N
VAL
190
A
N
VAL
190
H
O
SER
187
A
O
SER
187
H
N
HIS
171
A
N
HIS
171
H
O
THR
158
A
O
THR
158
H
N
ALA
205
A
N
ALA
205
H
O
CYS
202
A
O
CYS
202
H
N
LYS
215
A
N
LYS
215
L
O
THR
5
B
O
THR
5
L
N
SER
24
B
N
SER
24
L
O
VAL
19
B
O
VAL
19
L
N
ILE
74
B
N
ILE
74
L
O
SER
69
B
O
SER
69
L
N
SER
66
B
N
SER
66
L
O
THR
11
B
O
THR
11
L
N
LYS
101
B
N
LYS
101
L
O
THR
100
B
O
THR
100
L
N
TYR
85
B
N
TYR
85
L
O
ILE
84
B
O
ILE
84
L
N
GLN
37
B
N
GLN
37
L
O
TRP
34
B
O
TRP
34
L
N
ILE
47
B
N
ILE
47
L
O
THR
112
B
O
THR
112
L
N
ASN
135
B
N
ASN
135
L
O
ALA
128
B
O
ALA
128
L
N
LEU
179
B
N
LEU
179
L
O
SER
174
B
O
SER
174
L
N
SER
160
B
N
SER
160
L
O
ASN
143
B
O
ASN
143
L
N
THR
195
B
N
THR
195
L
O
TYR
190
B
O
TYR
190
L
N
PHE
207
B
N
PHE
207
1
H
CG
ASP
66
A
CG
ASP
66
0
Y
1
H
OD1
ASP
66
A
OD1
ASP
66
0
Y
1
H
OD2
ASP
66
A
OD2
ASP
66
0
Y
1
H
N
GLN
138
A
N
GLN
138
0
Y
1
H
CA
GLN
138
A
CA
GLN
138
0
Y
1
H
C
GLN
138
A
C
GLN
138
0
Y
1
H
O
GLN
138
A
O
GLN
138
0
Y
1
H
CB
GLN
138
A
CB
GLN
138
0
Y
1
H
CG
GLN
138
A
CG
GLN
138
0
Y
1
H
CD
GLN
138
A
CD
GLN
138
0
Y
1
H
OE1
GLN
138
A
OE1
GLN
138
0
Y
1
H
NE2
GLN
138
A
NE2
GLN
138
0
Y
1
H
O
PRO
219
A
O
PRO
219
1
Y
1
L
N
GLN
154
B
N
GLN
154
0
Y
1
L
CA
GLN
154
B
CA
GLN
154
0
Y
1
L
C
GLN
154
B
C
GLN
154
0
Y
1
L
O
GLN
154
B
O
GLN
154
0
Y
1
L
CB
GLN
154
B
CB
GLN
154
0
Y
1
L
CG
GLN
154
B
CG
GLN
154
0
Y
1
L
CD
GLN
154
B
CD
GLN
154
0
Y
1
L
OE1
GLN
154
B
OE1
GLN
154
0
Y
1
L
NE2
GLN
154
B
NE2
GLN
154
0
Y
1
L
O
ASN
210
B
O
ASN
210
1
Y
1
P
CG
GLU
29
C
CG
GLU
19
0
Y
1
P
CD
GLU
29
C
CD
GLU
19
0
Y
1
P
OE1
GLU
29
C
OE1
GLU
19
0
Y
1
P
OE2
GLU
29
C
OE2
GLU
19
0
Y
1
P
CG
LYS
30
C
CG
LYS
20
0
Y
1
P
CD
LYS
30
C
CD
LYS
20
0
Y
1
P
CE
LYS
30
C
CE
LYS
20
0
Y
1
P
NZ
LYS
30
C
NZ
LYS
20
0
Y
1
P
N
GLN
95
C
N
GLN
85
0
Y
1
P
CA
GLN
95
C
CA
GLN
85
0
Y
1
P
C
GLN
95
C
C
GLN
85
0
Y
1
P
O
GLN
95
C
O
GLN
85
0
Y
1
P
CB
GLN
95
C
CB
GLN
85
0
Y
1
P
CG
GLN
95
C
CG
GLN
85
0
Y
1
P
CD
GLN
95
C
CD
GLN
85
0
Y
1
P
OE1
GLN
95
C
OE1
GLN
85
0
Y
1
P
NE2
GLN
95
C
NE2
GLN
85
0
Y
1
P
CG
ASP
166
C
CG
ASP
156
0
Y
1
P
OD1
ASP
166
C
OD1
ASP
156
0
Y
1
P
OD2
ASP
166
C
OD2
ASP
156
0
Y
1
P
CG
GLN
176
C
CG
GLN
166
0
Y
1
P
CD
GLN
176
C
CD
GLN
166
0
Y
1
P
OE1
GLN
176
C
OE1
GLN
166
0
Y
1
P
NE2
GLN
176
C
NE2
GLN
166
0
Y
1
P
CG
LYS
182
C
CG
LYS
172
0
Y
1
P
CD
LYS
182
C
CD
LYS
172
0
Y
1
P
CE
LYS
182
C
CE
LYS
172
0
Y
1
P
NZ
LYS
182
C
NZ
LYS
172
0
Y
1
P
O
GLY
220
C
O
GLY
210
1
Y
1
H
GLY
134
A
GLY
134
0
Y
1
H
SER
135
A
SER
135
0
Y
1
H
ALA
136
A
ALA
136
0
Y
1
H
ALA
137
A
ALA
137
0
Y
1
H
THR
139
A
THR
139
0
Y
1
H
ASN
140
A
ASN
140
0
Y
1
L
GLU
152
B
GLU
152
0
Y
1
L
ARG
153
B
ARG
153
0
Y
1
L
ASN
155
B
ASN
155
0
Y
1
P
VAL
11
C
VAL
1
0
Y
1
P
HIS
12
C
HIS
2
0
Y
1
P
VAL
86
C
VAL
76
0
Y
1
P
HIS
87
C
HIS
77
0
Y
1
P
ALA
88
C
ALA
78
0
Y
1
P
GLY
89
C
GLY
79
0
Y
1
P
PRO
90
C
PRO
80
0
Y
1
P
ILE
91
C
ILE
81
0
Y
1
P
ALA
92
C
ALA
82
0
Y
1
P
PRO
93
C
PRO
83
0
Y
1
P
GLY
94
C
GLY
84
0
Y
1
P
SER
146
C
SER
136
0
Y
1
H
GLN
43
-154.57
48.74
1
H
LEU
45
70.92
104.66
1
H
LYS
67
-159.21
-51.57
1
H
ALA
92
-176.50
-171.20
1
H
ARG
102
-125.25
-105.47
1
H
ALA
136
86.91
-165.47
1
H
GLN
138
175.58
96.48
1
H
SER
167
-144.15
-43.02
1
H
SER
168
-37.72
-38.29
1
H
GLN
178
-122.88
-55.16
1
H
SER
179
-154.39
-69.12
1
L
GLU
49
27.11
60.61
1
L
ILE
50
69.87
-53.98
1
L
ALA
83
-177.94
-169.87
1
L
ASN
136
43.69
75.31
1
L
PRO
139
-59.78
179.40
1
L
ASN
155
83.90
170.72
1
L
ASN
188
-142.17
-39.96
1
L
LYS
197
-64.03
2.81
1
L
SER
199
-170.43
149.60
1
P
ALA
31
54.66
-97.51
1
P
PHE
32
-144.79
30.90
1
P
HIS
62
49.98
28.27
1
P
VAL
86
7.63
-93.60
1
P
PRO
90
-65.56
81.15
1
P
ALA
92
72.59
100.78
1
P
GLN
95
-139.54
-73.51
1
P
THR
119
-115.49
75.54
1
P
PRO
125
-68.20
61.60
1
P
ALA
174
-116.06
59.86
1
P
GLN
219
-95.08
54.48
PARTIALLY DISORDERED REGIONS: L152 - L155 AND H134 - H140 MISSING RESIDUES IN P24: HIS TAG, 12 FIRSTS AA, P146, P86 TO P95
0.284
0.210
0.210
3.0
15.0
1528
14740
11.6
84.7
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
FAB13B5, 1AFV, 1AM3
3.0
15.0
0
4914
0
0
4914
0.005
1.201
3.000
27.700
1E6J
14742
0.09400
1
2.400
84.7
3.00
0.27600
1
1.60
33.1
refinement
X-PLOR
3.8
data reduction
MOSFLM
data scaling
CCP4
phasing
AMoRE
Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5
1
N
N
2
N
N
3
N
N
H
THR
28
A
THR
28
HELX_P
H
TYR
32
A
TYR
32
5
1
5
H
GLN
62
A
GLN
62
HELX_P
H
LYS
65
A
LYS
65
5
2
4
H
LYS
74
A
LYS
74
HELX_P
H
SER
76
A
SER
76
5
3
3
H
THR
87
A
THR
87
HELX_P
H
SER
91
A
SER
91
5
4
5
H
SER
193
A
SER
193
HELX_P
H
TRP
195
A
TRP
195
5
5
3
H
PRO
207
A
PRO
207
HELX_P
H
SER
210
A
SER
210
5
6
4
L
GLU
78
B
GLU
78
HELX_P
L
ALA
82
B
ALA
82
5
7
5
L
SER
119
B
SER
119
HELX_P
L
SER
125
B
SER
125
1
8
7
L
LYS
181
B
LYS
181
HELX_P
L
ARG
186
B
ARG
186
1
9
6
P
SER
16
C
SER
6
HELX_P
P
ALA
31
C
ALA
21
1
10
16
P
GLU
35
C
GLU
25
HELX_P
P
SER
44
C
SER
34
1
11
10
P
THR
48
C
THR
38
HELX_P
P
THR
58
C
THR
48
1
12
11
P
HIS
62
C
HIS
52
HELX_P
P
HIS
84
C
HIS
74
1
13
23
P
ARG
100
C
ARG
90
HELX_P
P
ALA
105
C
ALA
95
1
14
6
P
THR
110
C
THR
100
HELX_P
P
THR
119
C
THR
109
1
15
10
P
PRO
125
C
PRO
115
HELX_P
P
SER
146
C
SER
136
1
16
22
P
SER
149
C
SER
139
HELX_P
P
ILE
153
C
ILE
143
5
17
5
P
PRO
160
C
PRO
150
HELX_P
P
ALA
174
C
ALA
164
1
18
15
P
SER
178
C
SER
168
HELX_P
P
ASN
193
C
ASN
183
1
19
16
P
ASN
195
C
ASN
185
HELX_P
P
GLY
206
C
GLY
196
1
20
12
P
THR
210
C
THR
200
HELX_P
P
CYS
218
C
CYS
208
1
21
9
disulf
2.756
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
96
A
SG
CYS
96
1_555
disulf
2.749
H
CYS
147
A
SG
CYS
147
1_555
H
CYS
202
A
SG
CYS
202
1_555
disulf
2.760
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
87
B
SG
CYS
87
1_555
disulf
2.673
L
CYS
132
B
SG
CYS
132
1_555
L
CYS
192
B
SG
CYS
192
1_555
VIRAL PROTEIN
HIV CAPSID PROTEIN (P24), P24, FAB, HIV-1, VIRUS ASSEMBLY, CAPSID, CA, ANTIGEN, ANTIBODY, PROTEIN-PROTEIN INTERACTIONS, VIRAL PROTEIN
H
PHE
153
A
PHE
153
1
H
PRO
154
A
PRO
154
-0.52
H
GLU
155
A
GLU
155
1
H
PRO
156
A
PRO
156
-0.48
H
TRP
195
A
TRP
195
1
H
PRO
196
A
PRO
196
-0.29
L
SER
7
B
SER
7
1
L
PRO
8
B
PRO
8
0.26
L
TYR
92
B
TYR
92
1
L
PRO
93
B
PRO
93
0.23
L
TYR
138
B
TYR
138
1
L
PRO
139
B
PRO
139
1.06
P
ASN
121
C
ASN
111
1
P
PRO
122
C
PRO
112
-0.14
1E6J
PDB
1
1E6J
1E6J
PDB
2
1E6J
GAG_HV1H2
UNP
3
P04591
1
219
1E6J
1
219
1E6J
H
1
1
219
1
210
1E6J
1
210
1E6J
L
2
1
210
143
352
1E6J
11
220
P04591
P
3
1
210
4
6
4
3
4
5
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
GLN
6
A
GLN
6
H
SER
17
A
SER
17
H
SER
25
A
SER
25
H
THR
78
A
THR
78
H
SER
84
A
SER
84
H
ALA
68
A
ALA
68
H
ASP
73
A
ASP
73
H
GLU
10
A
GLU
10
H
ALA
12
A
ALA
12
H
SER
114
A
SER
114
H
VAL
118
A
VAL
118
H
ALA
92
A
ALA
92
H
SER
97
A
SER
97
H
THR
33
A
THR
33
H
GLN
39
A
GLN
39
H
GLU
46
A
GLU
46
H
ASN
52
A
ASN
52
H
SER
58
A
SER
58
H
TYR
60
A
TYR
60
H
SER
127
A
SER
127
H
LEU
131
A
LEU
131
H
MET
142
A
MET
142
H
TYR
152
A
TYR
152
H
TYR
182
A
TYR
182
H
PRO
191
A
PRO
191
H
VAL
170
A
VAL
170
H
THR
172
A
THR
172
H
THR
158
A
THR
158
H
TRP
161
A
TRP
161
H
THR
201
A
THR
201
H
HIS
206
A
HIS
206
H
THR
211
A
THR
211
H
LYS
216
A
LYS
216
L
LEU
4
B
LEU
4
L
SER
7
B
SER
7
L
VAL
19
B
VAL
19
L
ALA
25
B
ALA
25
L
SER
69
B
SER
69
L
ILE
74
B
ILE
74
L
PHE
61
B
PHE
61
L
SER
66
B
SER
66
L
ILE
10
B
ILE
10
L
ALA
13
B
ALA
13
L
THR
100
B
THR
100
L
ILE
104
B
ILE
104
L
ALA
83
B
ALA
83
L
GLN
89
B
GLN
89
L
MET
32
B
MET
32
L
GLN
37
B
GLN
37
L
LYS
44
B
LYS
44
L
ILE
47
B
ILE
47
L
THR
112
B
THR
112
L
PHE
116
B
PHE
116
L
GLY
127
B
GLY
127
L
ASN
135
B
ASN
135
L
MET
173
B
MET
173
L
THR
180
B
THR
180
L
VAL
157
B
VAL
157
L
TRP
161
B
TRP
161
L
ILE
142
B
ILE
142
L
ILE
148
B
ILE
148
L
SER
189
B
SER
189
L
HIS
196
B
HIS
196
L
ILE
203
B
ILE
203
L
ASN
208
B
ASN
208
5
C 1 2 1