0.027263
0.000000
0.000000
0.000000
0.012210
0.000000
0.000000
0.000000
0.007440
0.00000
0.00000
0.00000
Monaco-Malbet, S.
Berthet-Colominas, C.
Novelli, A.
Battai, N.
Piga, N.
Mallet, F.
Cusack, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
36.680
81.900
134.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Structure
STRUE6
2005
0969-2126
8
1069
10.1016/S0969-2126(00)00507-4
11080628
Mutual Conformational Adaptations in Antigen and Antibody Upon Complex Formation between an Fab and HIV-1 Capsid Protein P24
2000
10.2210/pdb1e6o/pdb
pdb_00001e6o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1997-04-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.799
1.0
BM14
ESRF
0.799
SYNCHROTRON
ESRF BEAMLINE BM14
OBTAINED BY PEPSIN CLEAVAGE (FAB')
23552.301
IMMUNOGLOBULIN HEAVY CHAIN
HEAVY CHAIN 1-219
1
nat
polymer
OBTAINED BY PEPSIN CLEAVAGE (FAB')
23285.732
IMMUNOGLOBULIN LIGHT CHAIN
LIGHT CHAIN 1-210
1
nat
polymer
18.015
water
237
nat
water
no
no
EVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSSGYSNYNQKFKDKATLTADKSSSTAY
MQLSSLTSEDSAVYYCSRPVVRLGYNFDYWGQGSTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
EVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSSGYSNYNQKFKDKATLTADKSSSTAY
MQLSSLTSEDSAVYYCSRPVVRLGYNFDYWGQGSTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
H
polypeptide(L)
no
no
EIVLTQSPAITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIYEISKLASGVPARFSGSGSGTSYSLTISSMEAE
DAAIYYCQQWNYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS
WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
EIVLTQSPAITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIYEISKLASGVPARFSGSGSGTSYSLTISSMEAE
DAAIYYCQQWNYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS
WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HOUSE MOUSE
sample
10090
MUS MUSCULUS
HOUSE MOUSE
sample
10090
MUS MUSCULUS
1
2.2
44
VAPOR DIFFUSION, HANGING DROP
7.80
7MG/ML OF FAB'13B5 IN 0.1M PIPES PH=7.8 IN 9% TO 11% PEG8000 AFTER EQUILIBRATION IN HANGING DROPS AT 22C, pH 7.80
295
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
pdbx_unobs_or_zero_occ_residues
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_residues
repository
Initial release
Version format compliance
Version format compliance
Advisory
Data collection
Experimental preparation
Other
Advisory
Data collection
Database references
Other
Refinement description
1
0
2000-11-27
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2023-12-13
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
CRYSTAL STRUCTURE OF HIV-1 CAPSID PROTEIN (P24) IN COMPLEX WITH FAB13B5
HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
HIV CAPSID C-TERMINAL DOMAIN
HUMAN IMMUNODEFICIENCY VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE
SOLUTION STRUCTURE OF NCP7 FROM HIV-1
PDBE
Y
PDBE
2000-08-21
REL
REL
HOH
water
1AFV
PDB
experimental model
HOH
2001
3
HOH
HOH
2001
H
HOH
2002
3
HOH
HOH
2002
H
HOH
2003
3
HOH
HOH
2003
H
HOH
2004
3
HOH
HOH
2004
H
HOH
2005
3
HOH
HOH
2005
H
HOH
2006
3
HOH
HOH
2006
H
HOH
2007
3
HOH
HOH
2007
H
HOH
2008
3
HOH
HOH
2008
H
HOH
2009
3
HOH
HOH
2009
H
HOH
2010
3
HOH
HOH
2010
H
HOH
2011
3
HOH
HOH
2011
H
HOH
2012
3
HOH
HOH
2012
H
HOH
2013
3
HOH
HOH
2013
H
HOH
2014
3
HOH
HOH
2014
H
HOH
2015
3
HOH
HOH
2015
H
HOH
2016
3
HOH
HOH
2016
H
HOH
2017
3
HOH
HOH
2017
H
HOH
2018
3
HOH
HOH
2018
H
HOH
2019
3
HOH
HOH
2019
H
HOH
2020
3
HOH
HOH
2020
H
HOH
2021
3
HOH
HOH
2021
H
HOH
2022
3
HOH
HOH
2022
H
HOH
2023
3
HOH
HOH
2023
H
HOH
2024
3
HOH
HOH
2024
H
HOH
2025
3
HOH
HOH
2025
H
HOH
2026
3
HOH
HOH
2026
H
HOH
2027
3
HOH
HOH
2027
H
HOH
2028
3
HOH
HOH
2028
H
HOH
2029
3
HOH
HOH
2029
H
HOH
2030
3
HOH
HOH
2030
H
HOH
2031
3
HOH
HOH
2031
H
HOH
2032
3
HOH
HOH
2032
H
HOH
2033
3
HOH
HOH
2033
H
HOH
2034
3
HOH
HOH
2034
H
HOH
2035
3
HOH
HOH
2035
H
HOH
2036
3
HOH
HOH
2036
H
HOH
2037
3
HOH
HOH
2037
H
HOH
2038
3
HOH
HOH
2038
H
HOH
2039
3
HOH
HOH
2039
H
HOH
2040
3
HOH
HOH
2040
H
HOH
2041
3
HOH
HOH
2041
H
HOH
2042
3
HOH
HOH
2042
H
HOH
2043
3
HOH
HOH
2043
H
HOH
2044
3
HOH
HOH
2044
H
HOH
2045
3
HOH
HOH
2045
H
HOH
2046
3
HOH
HOH
2046
H
HOH
2047
3
HOH
HOH
2047
H
HOH
2048
3
HOH
HOH
2048
H
HOH
2049
3
HOH
HOH
2049
H
HOH
2050
3
HOH
HOH
2050
H
HOH
2051
3
HOH
HOH
2051
H
HOH
2052
3
HOH
HOH
2052
H
HOH
2053
3
HOH
HOH
2053
H
HOH
2054
3
HOH
HOH
2054
H
HOH
2055
3
HOH
HOH
2055
H
HOH
2056
3
HOH
HOH
2056
H
HOH
2057
3
HOH
HOH
2057
H
HOH
2058
3
HOH
HOH
2058
H
HOH
2059
3
HOH
HOH
2059
H
HOH
2060
3
HOH
HOH
2060
H
HOH
2061
3
HOH
HOH
2061
H
HOH
2062
3
HOH
HOH
2062
H
HOH
2063
3
HOH
HOH
2063
H
HOH
2064
3
HOH
HOH
2064
H
HOH
2065
3
HOH
HOH
2065
H
HOH
2066
3
HOH
HOH
2066
H
HOH
2067
3
HOH
HOH
2067
H
HOH
2068
3
HOH
HOH
2068
H
HOH
2069
3
HOH
HOH
2069
H
HOH
2070
3
HOH
HOH
2070
H
HOH
2071
3
HOH
HOH
2071
H
HOH
2072
3
HOH
HOH
2072
H
HOH
2073
3
HOH
HOH
2073
H
HOH
2074
3
HOH
HOH
2074
H
HOH
2075
3
HOH
HOH
2075
H
HOH
2076
3
HOH
HOH
2076
H
HOH
2077
3
HOH
HOH
2077
H
HOH
2078
3
HOH
HOH
2078
H
HOH
2079
3
HOH
HOH
2079
H
HOH
2080
3
HOH
HOH
2080
H
HOH
2081
3
HOH
HOH
2081
H
HOH
2082
3
HOH
HOH
2082
H
HOH
2083
3
HOH
HOH
2083
H
HOH
2084
3
HOH
HOH
2084
H
HOH
2085
3
HOH
HOH
2085
H
HOH
2086
3
HOH
HOH
2086
H
HOH
2087
3
HOH
HOH
2087
H
HOH
2088
3
HOH
HOH
2088
H
HOH
2089
3
HOH
HOH
2089
H
HOH
2090
3
HOH
HOH
2090
H
HOH
2091
3
HOH
HOH
2091
H
HOH
2092
3
HOH
HOH
2092
H
HOH
2093
3
HOH
HOH
2093
H
HOH
2094
3
HOH
HOH
2094
H
HOH
2095
3
HOH
HOH
2095
H
HOH
2096
3
HOH
HOH
2096
H
HOH
2097
3
HOH
HOH
2097
H
HOH
2098
3
HOH
HOH
2098
H
HOH
2099
3
HOH
HOH
2099
H
HOH
2100
3
HOH
HOH
2100
H
HOH
2101
3
HOH
HOH
2101
H
HOH
2102
3
HOH
HOH
2102
H
HOH
2103
3
HOH
HOH
2103
H
HOH
2104
3
HOH
HOH
2104
H
HOH
2105
3
HOH
HOH
2105
H
HOH
2106
3
HOH
HOH
2106
H
HOH
2107
3
HOH
HOH
2107
H
HOH
2108
3
HOH
HOH
2108
H
HOH
2109
3
HOH
HOH
2109
H
HOH
2110
3
HOH
HOH
2110
H
HOH
2111
3
HOH
HOH
2111
H
HOH
2112
3
HOH
HOH
2112
H
HOH
2001
3
HOH
HOH
2001
L
HOH
2002
3
HOH
HOH
2002
L
HOH
2003
3
HOH
HOH
2003
L
HOH
2004
3
HOH
HOH
2004
L
HOH
2005
3
HOH
HOH
2005
L
HOH
2006
3
HOH
HOH
2006
L
HOH
2007
3
HOH
HOH
2007
L
HOH
2008
3
HOH
HOH
2008
L
HOH
2009
3
HOH
HOH
2009
L
HOH
2010
3
HOH
HOH
2010
L
HOH
2011
3
HOH
HOH
2011
L
HOH
2012
3
HOH
HOH
2012
L
HOH
2013
3
HOH
HOH
2013
L
HOH
2014
3
HOH
HOH
2014
L
HOH
2015
3
HOH
HOH
2015
L
HOH
2016
3
HOH
HOH
2016
L
HOH
2017
3
HOH
HOH
2017
L
HOH
2018
3
HOH
HOH
2018
L
HOH
2019
3
HOH
HOH
2019
L
HOH
2020
3
HOH
HOH
2020
L
HOH
2021
3
HOH
HOH
2021
L
HOH
2022
3
HOH
HOH
2022
L
HOH
2023
3
HOH
HOH
2023
L
HOH
2024
3
HOH
HOH
2024
L
HOH
2025
3
HOH
HOH
2025
L
HOH
2026
3
HOH
HOH
2026
L
HOH
2027
3
HOH
HOH
2027
L
HOH
2028
3
HOH
HOH
2028
L
HOH
2029
3
HOH
HOH
2029
L
HOH
2030
3
HOH
HOH
2030
L
HOH
2031
3
HOH
HOH
2031
L
HOH
2032
3
HOH
HOH
2032
L
HOH
2033
3
HOH
HOH
2033
L
HOH
2034
3
HOH
HOH
2034
L
HOH
2035
3
HOH
HOH
2035
L
HOH
2036
3
HOH
HOH
2036
L
HOH
2037
3
HOH
HOH
2037
L
HOH
2038
3
HOH
HOH
2038
L
HOH
2039
3
HOH
HOH
2039
L
HOH
2040
3
HOH
HOH
2040
L
HOH
2041
3
HOH
HOH
2041
L
HOH
2042
3
HOH
HOH
2042
L
HOH
2043
3
HOH
HOH
2043
L
HOH
2044
3
HOH
HOH
2044
L
HOH
2045
3
HOH
HOH
2045
L
HOH
2046
3
HOH
HOH
2046
L
HOH
2047
3
HOH
HOH
2047
L
HOH
2048
3
HOH
HOH
2048
L
HOH
2049
3
HOH
HOH
2049
L
HOH
2050
3
HOH
HOH
2050
L
HOH
2051
3
HOH
HOH
2051
L
HOH
2052
3
HOH
HOH
2052
L
HOH
2053
3
HOH
HOH
2053
L
HOH
2054
3
HOH
HOH
2054
L
HOH
2055
3
HOH
HOH
2055
L
HOH
2056
3
HOH
HOH
2056
L
HOH
2057
3
HOH
HOH
2057
L
HOH
2058
3
HOH
HOH
2058
L
HOH
2059
3
HOH
HOH
2059
L
HOH
2060
3
HOH
HOH
2060
L
HOH
2061
3
HOH
HOH
2061
L
HOH
2062
3
HOH
HOH
2062
L
HOH
2063
3
HOH
HOH
2063
L
HOH
2064
3
HOH
HOH
2064
L
HOH
2065
3
HOH
HOH
2065
L
HOH
2066
3
HOH
HOH
2066
L
HOH
2067
3
HOH
HOH
2067
L
HOH
2068
3
HOH
HOH
2068
L
HOH
2069
3
HOH
HOH
2069
L
HOH
2070
3
HOH
HOH
2070
L
HOH
2071
3
HOH
HOH
2071
L
HOH
2072
3
HOH
HOH
2072
L
HOH
2073
3
HOH
HOH
2073
L
HOH
2074
3
HOH
HOH
2074
L
HOH
2075
3
HOH
HOH
2075
L
HOH
2076
3
HOH
HOH
2076
L
HOH
2077
3
HOH
HOH
2077
L
HOH
2078
3
HOH
HOH
2078
L
HOH
2079
3
HOH
HOH
2079
L
HOH
2080
3
HOH
HOH
2080
L
HOH
2081
3
HOH
HOH
2081
L
HOH
2082
3
HOH
HOH
2082
L
HOH
2083
3
HOH
HOH
2083
L
HOH
2084
3
HOH
HOH
2084
L
HOH
2085
3
HOH
HOH
2085
L
HOH
2086
3
HOH
HOH
2086
L
HOH
2087
3
HOH
HOH
2087
L
HOH
2088
3
HOH
HOH
2088
L
HOH
2089
3
HOH
HOH
2089
L
HOH
2090
3
HOH
HOH
2090
L
HOH
2091
3
HOH
HOH
2091
L
HOH
2092
3
HOH
HOH
2092
L
HOH
2093
3
HOH
HOH
2093
L
HOH
2094
3
HOH
HOH
2094
L
HOH
2095
3
HOH
HOH
2095
L
HOH
2096
3
HOH
HOH
2096
L
HOH
2097
3
HOH
HOH
2097
L
HOH
2098
3
HOH
HOH
2098
L
HOH
2099
3
HOH
HOH
2099
L
HOH
2100
3
HOH
HOH
2100
L
HOH
2101
3
HOH
HOH
2101
L
HOH
2102
3
HOH
HOH
2102
L
HOH
2103
3
HOH
HOH
2103
L
HOH
2104
3
HOH
HOH
2104
L
HOH
2105
3
HOH
HOH
2105
L
HOH
2106
3
HOH
HOH
2106
L
HOH
2107
3
HOH
HOH
2107
L
HOH
2108
3
HOH
HOH
2108
L
HOH
2109
3
HOH
HOH
2109
L
HOH
2110
3
HOH
HOH
2110
L
HOH
2111
3
HOH
HOH
2111
L
HOH
2112
3
HOH
HOH
2112
L
HOH
2113
3
HOH
HOH
2113
L
HOH
2114
3
HOH
HOH
2114
L
HOH
2115
3
HOH
HOH
2115
L
HOH
2116
3
HOH
HOH
2116
L
HOH
2117
3
HOH
HOH
2117
L
HOH
2118
3
HOH
HOH
2118
L
HOH
2119
3
HOH
HOH
2119
L
HOH
2120
3
HOH
HOH
2120
L
HOH
2121
3
HOH
HOH
2121
L
HOH
2122
3
HOH
HOH
2122
L
HOH
2123
3
HOH
HOH
2123
L
HOH
2124
3
HOH
HOH
2124
L
HOH
2125
3
HOH
HOH
2125
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
ALA
12
n
12
ALA
12
H
ARG
13
n
13
ARG
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
MET
20
n
20
MET
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
TYR
32
n
32
TYR
32
H
THR
33
n
33
THR
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
TYR
50
n
50
TYR
50
H
ILE
51
n
51
ILE
51
H
ASN
52
n
52
ASN
52
H
PRO
53
n
53
PRO
53
H
SER
54
n
54
SER
54
H
SER
55
n
55
SER
55
H
GLY
56
n
56
GLY
56
H
TYR
57
n
57
TYR
57
H
SER
58
n
58
SER
58
H
ASN
59
n
59
ASN
59
H
TYR
60
n
60
TYR
60
H
ASN
61
n
61
ASN
61
H
GLN
62
n
62
GLN
62
H
LYS
63
n
63
LYS
63
H
PHE
64
n
64
PHE
64
H
LYS
65
n
65
LYS
65
H
ASP
66
n
66
ASP
66
H
LYS
67
n
67
LYS
67
H
ALA
68
n
68
ALA
68
H
THR
69
n
69
THR
69
H
LEU
70
n
70
LEU
70
H
THR
71
n
71
THR
71
H
ALA
72
n
72
ALA
72
H
ASP
73
n
73
ASP
73
H
LYS
74
n
74
LYS
74
H
SER
75
n
75
SER
75
H
SER
76
n
76
SER
76
H
SER
77
n
77
SER
77
H
THR
78
n
78
THR
78
H
ALA
79
n
79
ALA
79
H
TYR
80
n
80
TYR
80
H
MET
81
n
81
MET
81
H
GLN
82
n
82
GLN
82
H
LEU
83
n
83
LEU
83
H
SER
84
n
84
SER
84
H
SER
85
n
85
SER
85
H
LEU
86
n
86
LEU
86
H
THR
87
n
87
THR
87
H
SER
88
n
88
SER
88
H
GLU
89
n
89
GLU
89
H
ASP
90
n
90
ASP
90
H
SER
91
n
91
SER
91
H
ALA
92
n
92
ALA
92
H
VAL
93
n
93
VAL
93
H
TYR
94
n
94
TYR
94
H
TYR
95
n
95
TYR
95
H
CYS
96
n
96
CYS
96
H
SER
97
n
97
SER
97
H
ARG
98
n
98
ARG
98
H
PRO
99
n
99
PRO
99
H
VAL
100
n
100
VAL
100
H
VAL
101
n
101
VAL
101
H
ARG
102
n
102
ARG
102
H
LEU
103
n
103
LEU
103
H
GLY
104
n
104
GLY
104
H
TYR
105
n
105
TYR
105
H
ASN
106
n
106
ASN
106
H
PHE
107
n
107
PHE
107
H
ASP
108
n
108
ASP
108
H
TYR
109
n
109
TYR
109
H
TRP
110
n
110
TRP
110
H
GLY
111
n
111
GLY
111
H
GLN
112
n
112
GLN
112
H
GLY
113
n
113
GLY
113
H
SER
114
n
114
SER
114
H
THR
115
n
115
THR
115
H
LEU
116
n
116
LEU
116
H
THR
117
n
117
THR
117
H
VAL
118
n
118
VAL
118
H
SER
119
n
119
SER
119
H
SER
120
n
120
SER
120
H
ALA
121
n
121
ALA
121
H
LYS
122
n
122
LYS
122
H
THR
123
n
123
THR
123
H
THR
124
n
124
THR
124
H
PRO
125
n
125
PRO
125
H
PRO
126
n
126
PRO
126
H
SER
127
n
127
SER
127
H
VAL
128
n
128
VAL
128
H
TYR
129
n
129
TYR
129
H
PRO
130
n
130
PRO
130
H
LEU
131
n
131
LEU
131
H
ALA
132
n
132
ALA
132
H
PRO
133
n
133
PRO
133
H
GLY
134
n
134
GLY
134
H
SER
135
n
135
SER
135
H
ALA
136
n
136
ALA
136
H
ALA
137
n
137
ALA
137
H
GLN
138
n
138
GLN
138
H
THR
139
n
139
THR
139
H
ASN
140
n
140
ASN
140
H
SER
141
n
141
SER
141
H
MET
142
n
142
MET
142
H
VAL
143
n
143
VAL
143
H
THR
144
n
144
THR
144
H
LEU
145
n
145
LEU
145
H
GLY
146
n
146
GLY
146
H
CYS
147
n
147
CYS
147
H
LEU
148
n
148
LEU
148
H
VAL
149
n
149
VAL
149
H
LYS
150
n
150
LYS
150
H
GLY
151
n
151
GLY
151
H
TYR
152
n
152
TYR
152
H
PHE
153
n
153
PHE
153
H
PRO
154
n
154
PRO
154
H
GLU
155
n
155
GLU
155
H
PRO
156
n
156
PRO
156
H
VAL
157
n
157
VAL
157
H
THR
158
n
158
THR
158
H
VAL
159
n
159
VAL
159
H
THR
160
n
160
THR
160
H
TRP
161
n
161
TRP
161
H
ASN
162
n
162
ASN
162
H
SER
163
n
163
SER
163
H
GLY
164
n
164
GLY
164
H
SER
165
n
165
SER
165
H
LEU
166
n
166
LEU
166
H
SER
167
n
167
SER
167
H
SER
168
n
168
SER
168
H
GLY
169
n
169
GLY
169
H
VAL
170
n
170
VAL
170
H
HIS
171
n
171
HIS
171
H
THR
172
n
172
THR
172
H
PHE
173
n
173
PHE
173
H
PRO
174
n
174
PRO
174
H
ALA
175
n
175
ALA
175
H
VAL
176
n
176
VAL
176
H
LEU
177
n
177
LEU
177
H
GLN
178
n
178
GLN
178
H
SER
179
n
179
SER
179
H
ASP
180
n
180
ASP
180
H
LEU
181
n
181
LEU
181
H
TYR
182
n
182
TYR
182
H
THR
183
n
183
THR
183
H
LEU
184
n
184
LEU
184
H
SER
185
n
185
SER
185
H
SER
186
n
186
SER
186
H
SER
187
n
187
SER
187
H
VAL
188
n
188
VAL
188
H
THR
189
n
189
THR
189
H
VAL
190
n
190
VAL
190
H
PRO
191
n
191
PRO
191
H
SER
192
n
192
SER
192
H
SER
193
n
193
SER
193
H
THR
194
n
194
THR
194
H
TRP
195
n
195
TRP
195
H
PRO
196
n
196
PRO
196
H
SER
197
n
197
SER
197
H
GLU
198
n
198
GLU
198
H
THR
199
n
199
THR
199
H
VAL
200
n
200
VAL
200
H
THR
201
n
201
THR
201
H
CYS
202
n
202
CYS
202
H
ASN
203
n
203
ASN
203
H
VAL
204
n
204
VAL
204
H
ALA
205
n
205
ALA
205
H
HIS
206
n
206
HIS
206
H
PRO
207
n
207
PRO
207
H
ALA
208
n
208
ALA
208
H
SER
209
n
209
SER
209
H
SER
210
n
210
SER
210
H
THR
211
n
211
THR
211
H
LYS
212
n
212
LYS
212
H
VAL
213
n
213
VAL
213
H
ASP
214
n
214
ASP
214
H
LYS
215
n
215
LYS
215
H
LYS
216
n
216
LYS
216
H
ILE
217
n
217
ILE
217
H
VAL
218
n
218
VAL
218
H
PRO
219
n
219
PRO
219
H
GLU
1
n
1
GLU
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
ILE
10
n
10
ILE
10
L
THR
11
n
11
THR
11
L
ALA
12
n
12
ALA
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
LYS
18
n
18
LYS
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
SER
24
n
24
SER
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
SER
27
n
27
SER
27
L
SER
28
n
28
SER
28
L
VAL
29
n
29
VAL
29
L
SER
30
n
30
SER
30
L
TYR
31
n
31
TYR
31
L
MET
32
n
32
MET
32
L
HIS
33
n
33
HIS
33
L
TRP
34
n
34
TRP
34
L
TYR
35
n
35
TYR
35
L
GLN
36
n
36
GLN
36
L
GLN
37
n
37
GLN
37
L
LYS
38
n
38
LYS
38
L
SER
39
n
39
SER
39
L
GLY
40
n
40
GLY
40
L
THR
41
n
41
THR
41
L
SER
42
n
42
SER
42
L
PRO
43
n
43
PRO
43
L
LYS
44
n
44
LYS
44
L
PRO
45
n
45
PRO
45
L
TRP
46
n
46
TRP
46
L
ILE
47
n
47
ILE
47
L
TYR
48
n
48
TYR
48
L
GLU
49
n
49
GLU
49
L
ILE
50
n
50
ILE
50
L
SER
51
n
51
SER
51
L
LYS
52
n
52
LYS
52
L
LEU
53
n
53
LEU
53
L
ALA
54
n
54
ALA
54
L
SER
55
n
55
SER
55
L
GLY
56
n
56
GLY
56
L
VAL
57
n
57
VAL
57
L
PRO
58
n
58
PRO
58
L
ALA
59
n
59
ALA
59
L
ARG
60
n
60
ARG
60
L
PHE
61
n
61
PHE
61
L
SER
62
n
62
SER
62
L
GLY
63
n
63
GLY
63
L
SER
64
n
64
SER
64
L
GLY
65
n
65
GLY
65
L
SER
66
n
66
SER
66
L
GLY
67
n
67
GLY
67
L
THR
68
n
68
THR
68
L
SER
69
n
69
SER
69
L
TYR
70
n
70
TYR
70
L
SER
71
n
71
SER
71
L
LEU
72
n
72
LEU
72
L
THR
73
n
73
THR
73
L
ILE
74
n
74
ILE
74
L
SER
75
n
75
SER
75
L
SER
76
n
76
SER
76
L
MET
77
n
77
MET
77
L
GLU
78
n
78
GLU
78
L
ALA
79
n
79
ALA
79
L
GLU
80
n
80
GLU
80
L
ASP
81
n
81
ASP
81
L
ALA
82
n
82
ALA
82
L
ALA
83
n
83
ALA
83
L
ILE
84
n
84
ILE
84
L
TYR
85
n
85
TYR
85
L
TYR
86
n
86
TYR
86
L
CYS
87
n
87
CYS
87
L
GLN
88
n
88
GLN
88
L
GLN
89
n
89
GLN
89
L
TRP
90
n
90
TRP
90
L
ASN
91
n
91
ASN
91
L
TYR
92
n
92
TYR
92
L
PRO
93
n
93
PRO
93
L
PHE
94
n
94
PHE
94
L
THR
95
n
95
THR
95
L
PHE
96
n
96
PHE
96
L
GLY
97
n
97
GLY
97
L
SER
98
n
98
SER
98
L
GLY
99
n
99
GLY
99
L
THR
100
n
100
THR
100
L
LYS
101
n
101
LYS
101
L
LEU
102
n
102
LEU
102
L
GLU
103
n
103
GLU
103
L
ILE
104
n
104
ILE
104
L
LYS
105
n
105
LYS
105
L
ARG
106
n
106
ARG
106
L
ALA
107
n
107
ALA
107
L
ASP
108
n
108
ASP
108
L
ALA
109
n
109
ALA
109
L
ALA
110
n
110
ALA
110
L
PRO
111
n
111
PRO
111
L
THR
112
n
112
THR
112
L
VAL
113
n
113
VAL
113
L
SER
114
n
114
SER
114
L
ILE
115
n
115
ILE
115
L
PHE
116
n
116
PHE
116
L
PRO
117
n
117
PRO
117
L
PRO
118
n
118
PRO
118
L
SER
119
n
119
SER
119
L
SER
120
n
120
SER
120
L
GLU
121
n
121
GLU
121
L
GLN
122
n
122
GLN
122
L
LEU
123
n
123
LEU
123
L
THR
124
n
124
THR
124
L
SER
125
n
125
SER
125
L
GLY
126
n
126
GLY
126
L
GLY
127
n
127
GLY
127
L
ALA
128
n
128
ALA
128
L
SER
129
n
129
SER
129
L
VAL
130
n
130
VAL
130
L
VAL
131
n
131
VAL
131
L
CYS
132
n
132
CYS
132
L
PHE
133
n
133
PHE
133
L
LEU
134
n
134
LEU
134
L
ASN
135
n
135
ASN
135
L
ASN
136
n
136
ASN
136
L
PHE
137
n
137
PHE
137
L
TYR
138
n
138
TYR
138
L
PRO
139
n
139
PRO
139
L
LYS
140
n
140
LYS
140
L
ASP
141
n
141
ASP
141
L
ILE
142
n
142
ILE
142
L
ASN
143
n
143
ASN
143
L
VAL
144
n
144
VAL
144
L
LYS
145
n
145
LYS
145
L
TRP
146
n
146
TRP
146
L
LYS
147
n
147
LYS
147
L
ILE
148
n
148
ILE
148
L
ASP
149
n
149
ASP
149
L
GLY
150
n
150
GLY
150
L
SER
151
n
151
SER
151
L
GLU
152
n
152
GLU
152
L
ARG
153
n
153
ARG
153
L
GLN
154
n
154
GLN
154
L
ASN
155
n
155
ASN
155
L
GLY
156
n
156
GLY
156
L
VAL
157
n
157
VAL
157
L
LEU
158
n
158
LEU
158
L
ASN
159
n
159
ASN
159
L
SER
160
n
160
SER
160
L
TRP
161
n
161
TRP
161
L
THR
162
n
162
THR
162
L
ASP
163
n
163
ASP
163
L
GLN
164
n
164
GLN
164
L
ASP
165
n
165
ASP
165
L
SER
166
n
166
SER
166
L
LYS
167
n
167
LYS
167
L
ASP
168
n
168
ASP
168
L
SER
169
n
169
SER
169
L
THR
170
n
170
THR
170
L
TYR
171
n
171
TYR
171
L
SER
172
n
172
SER
172
L
MET
173
n
173
MET
173
L
SER
174
n
174
SER
174
L
SER
175
n
175
SER
175
L
THR
176
n
176
THR
176
L
LEU
177
n
177
LEU
177
L
THR
178
n
178
THR
178
L
LEU
179
n
179
LEU
179
L
THR
180
n
180
THR
180
L
LYS
181
n
181
LYS
181
L
ASP
182
n
182
ASP
182
L
GLU
183
n
183
GLU
183
L
TYR
184
n
184
TYR
184
L
GLU
185
n
185
GLU
185
L
ARG
186
n
186
ARG
186
L
HIS
187
n
187
HIS
187
L
ASN
188
n
188
ASN
188
L
SER
189
n
189
SER
189
L
TYR
190
n
190
TYR
190
L
THR
191
n
191
THR
191
L
CYS
192
n
192
CYS
192
L
GLU
193
n
193
GLU
193
L
ALA
194
n
194
ALA
194
L
THR
195
n
195
THR
195
L
HIS
196
n
196
HIS
196
L
LYS
197
n
197
LYS
197
L
THR
198
n
198
THR
198
L
SER
199
n
199
SER
199
L
THR
200
n
200
THR
200
L
SER
201
n
201
SER
201
L
PRO
202
n
202
PRO
202
L
ILE
203
n
203
ILE
203
L
VAL
204
n
204
VAL
204
L
LYS
205
n
205
LYS
205
L
SER
206
n
206
SER
206
L
PHE
207
n
207
PHE
207
L
ASN
208
n
208
ASN
208
L
ARG
209
n
209
ARG
209
L
ASN
210
n
210
ASN
210
L
n
211
211
L
n
212
212
L
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
GLN
3
A
O
GLN
3
H
N
SER
25
A
N
SER
25
H
O
VAL
18
A
O
VAL
18
H
N
LEU
83
A
N
LEU
83
H
O
THR
78
A
O
THR
78
H
N
ASP
73
A
N
ASP
73
H
O
GLU
10
A
O
GLU
10
H
N
THR
117
A
N
THR
117
H
O
SER
114
A
O
SER
114
H
N
TYR
94
A
N
TYR
94
H
O
VAL
93
A
O
VAL
93
H
N
GLN
39
A
N
GLN
39
H
O
MET
34
A
O
MET
34
H
N
ILE
51
A
N
ILE
51
H
O
TYR
50
A
O
TYR
50
H
N
ASN
59
A
N
ASN
59
H
O
SER
127
A
O
SER
127
H
N
LYS
150
A
N
LYS
150
H
O
VAL
143
A
O
VAL
143
H
N
VAL
190
A
N
VAL
190
H
O
SER
187
A
O
SER
187
H
N
HIS
171
A
N
HIS
171
H
O
THR
158
A
O
THR
158
H
N
ALA
205
A
N
ALA
205
H
O
CYS
202
A
O
CYS
202
H
N
LYS
215
A
N
LYS
215
H
O
VAL
176
A
O
VAL
176
H
N
THR
183
A
N
THR
183
L
O
THR
5
B
O
THR
5
L
N
SER
24
B
N
SER
24
L
O
VAL
19
B
O
VAL
19
L
N
ILE
74
B
N
ILE
74
L
O
SER
69
B
O
SER
69
L
N
SER
66
B
N
SER
66
L
O
THR
11
B
O
THR
11
L
N
LYS
101
B
N
LYS
101
L
O
THR
100
B
O
THR
100
L
N
TYR
85
B
N
TYR
85
L
O
ILE
84
B
O
ILE
84
L
N
GLN
37
B
N
GLN
37
L
O
TRP
34
B
O
TRP
34
L
N
ILE
47
B
N
ILE
47
L
O
THR
112
B
O
THR
112
L
N
ASN
135
B
N
ASN
135
L
O
ALA
128
B
O
ALA
128
L
N
LEU
179
B
N
LEU
179
L
O
SER
174
B
O
SER
174
L
N
SER
160
B
N
SER
160
L
O
ASN
143
B
O
ASN
143
L
N
THR
195
B
N
THR
195
L
O
TYR
190
B
O
TYR
190
L
N
PHE
207
B
N
PHE
207
1
H
SER
135
A
SER
135
0
Y
1
H
ALA
136
A
ALA
136
0
Y
1
H
ALA
137
A
ALA
137
0
Y
1
H
GLN
138
A
GLN
138
0
Y
1
H
THR
139
A
THR
139
0
Y
1
H
ASN
140
A
ASN
140
0
Y
1
L
GLN
154
B
GLN
154
0
Y
1
L
ASN
155
B
ASN
155
0
Y
1
L
GLY
156
B
GLY
156
0
Y
1
L
GLU
211
B
GLU
211
1
Y
1
L
CYS
212
B
CYS
212
1
Y
1
H
ALA
92
179.47
-177.63
1
H
ARG
102
-125.52
-111.92
1
H
SER
135
57.84
82.21
1
H
ALA
136
-173.85
-29.68
1
L
SER
39
-23.53
126.55
1
L
ILE
50
70.66
-50.18
1
L
ALA
83
179.55
-172.43
1
L
ALA
128
-152.49
89.80
1
L
PRO
139
-64.57
-179.60
1
L
ASN
155
38.62
100.64
27.5
1.99
0.00
0.00
3.45
0.00
-5.44
LAST 4 AA OF L CHAIN ARE NOT SEQUENCED BUT PRESUMED TO BE RNEC
0.255
0.004
0.225
0.225
1.8
15
3569
35872
9.9
93.5
RANDOM
1000000
0.001
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
1AFV
1.8
15
237
3513
0
0
3276
0.005
1.4
0.320
0.014
0.256
1.91
509
4839
6
9.5
85
20.9
1.800
15.000
1E6O
35964
3.000
0.06300
1
3.500
94.0
1.80
1.85
0.12700
1
3.50
85.4
refinement
X-PLOR
3.8
data reduction
MOSFLM
data scaling
SCALA
phasing
X-PLOR
3.8
Crystal structure of Fab13B5 against HIV-1 capsid protein p24
1
N
N
2
N
N
3
N
N
3
N
N
H
THR
28
A
THR
28
HELX_P
H
TYR
32
A
TYR
32
5
1
5
H
GLN
62
A
GLN
62
HELX_P
H
PHE
64
A
PHE
64
5
2
3
H
THR
87
A
THR
87
HELX_P
H
SER
91
A
SER
91
5
3
5
H
ALA
136
A
ALA
136
HELX_P
H
ASN
140
A
ASN
140
5
4
5
H
SER
163
A
SER
163
HELX_P
H
SER
165
A
SER
165
5
5
3
H
PRO
207
A
PRO
207
HELX_P
H
SER
210
A
SER
210
5
6
4
L
GLU
78
B
GLU
78
HELX_P
L
ALA
82
B
ALA
82
5
7
5
L
SER
119
B
SER
119
HELX_P
L
SER
125
B
SER
125
1
8
7
L
LYS
181
B
LYS
181
HELX_P
L
HIS
187
B
HIS
187
1
9
7
disulf
2.036
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
96
A
SG
CYS
96
1_555
disulf
2.032
H
CYS
147
A
SG
CYS
147
1_555
H
CYS
202
A
SG
CYS
202
1_555
disulf
2.035
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
87
B
SG
CYS
87
1_555
disulf
2.031
L
CYS
132
B
SG
CYS
132
1_555
L
CYS
192
B
SG
CYS
192
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN, FAB, ANTIBODY, ANTIGEN, HIV-1, P24, CA
H
PHE
153
A
PHE
153
1
H
PRO
154
A
PRO
154
-0.48
H
GLU
155
A
GLU
155
1
H
PRO
156
A
PRO
156
0.16
H
TRP
195
A
TRP
195
1
H
PRO
196
A
PRO
196
0.35
L
SER
7
B
SER
7
1
L
PRO
8
B
PRO
8
-0.19
L
TYR
92
B
TYR
92
1
L
PRO
93
B
PRO
93
-0.09
L
TYR
138
B
TYR
138
1
L
PRO
139
B
PRO
139
-0.02
1E6O
PDB
1
1E6O
1E6O
PDB
2
1E6O
1
219
1E6O
1
219
1E6O
H
1
1
219
1
212
1E6O
1
212
1E6O
L
2
1
212
4
6
4
3
2
4
5
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
GLN
6
A
GLN
6
H
VAL
18
A
VAL
18
H
SER
25
A
SER
25
H
THR
78
A
THR
78
H
LEU
83
A
LEU
83
H
ALA
68
A
ALA
68
H
ASP
73
A
ASP
73
H
GLU
10
A
GLU
10
H
ALA
12
A
ALA
12
H
SER
114
A
SER
114
H
VAL
118
A
VAL
118
H
ALA
92
A
ALA
92
H
SER
97
A
SER
97
H
THR
33
A
THR
33
H
GLN
39
A
GLN
39
H
LEU
45
A
LEU
45
H
ASN
52
A
ASN
52
H
TYR
57
A
TYR
57
H
TYR
60
A
TYR
60
H
SER
127
A
SER
127
H
LEU
131
A
LEU
131
H
MET
142
A
MET
142
H
TYR
152
A
TYR
152
H
TYR
182
A
TYR
182
H
PRO
191
A
PRO
191
H
VAL
170
A
VAL
170
H
THR
172
A
THR
172
H
THR
158
A
THR
158
H
TRP
161
A
TRP
161
H
THR
201
A
THR
201
H
HIS
206
A
HIS
206
H
THR
211
A
THR
211
H
LYS
216
A
LYS
216
H
VAL
176
A
VAL
176
H
GLN
178
A
GLN
178
H
LEU
181
A
LEU
181
H
THR
183
A
THR
183
L
LEU
4
B
LEU
4
L
SER
7
B
SER
7
L
VAL
19
B
VAL
19
L
ALA
25
B
ALA
25
L
SER
69
B
SER
69
L
ILE
74
B
ILE
74
L
PHE
61
B
PHE
61
L
SER
66
B
SER
66
L
ILE
10
B
ILE
10
L
ALA
13
B
ALA
13
L
THR
100
B
THR
100
L
ILE
104
B
ILE
104
L
ALA
83
B
ALA
83
L
GLN
89
B
GLN
89
L
MET
32
B
MET
32
L
GLN
37
B
GLN
37
L
LYS
44
B
LYS
44
L
ILE
47
B
ILE
47
L
THR
112
B
THR
112
L
PHE
116
B
PHE
116
L
GLY
127
B
GLY
127
L
ASN
135
B
ASN
135
L
MET
173
B
MET
173
L
THR
180
B
THR
180
L
VAL
157
B
VAL
157
L
TRP
161
B
TRP
161
L
ASN
143
B
ASN
143
L
ILE
148
B
ILE
148
L
SER
189
B
SER
189
L
THR
195
B
THR
195
L
ILE
203
B
ILE
203
L
ASN
208
B
ASN
208
19
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