1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cerdan, R.
Payet, D.
Yang, J.-C.
Travers, A.A.
Neuhaus, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
10
504
10.1110/PS.35501
11344319
Hmg-D Complexed to a Bulge DNA: An NMR Model
2001
UK
Structure
STRUE6
2005
0969-2126
2
609
10.1016/S0969-2126(00)00063-0
7922039
The Solution Structure and Dynamics of the DNA-Binding Domain of Hmg-D from Drosophila Melanogaster
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8501.711
HIGH MOBILITY GROUP PROTEIN D
HMG-D DOMAIN
1
man
polymer
4288.817
DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3')
1
syn
polymer
3662.404
DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3')
1
syn
polymer
HMG-D
no
no
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG
A
polypeptide(L)
no
no
(DC)(DG)(DA)(DT)(DA)(DT)(DT)(DA)(DA)(DG)(DA)(DG)(DC)(DC)
CGATATTAAGAGCC
B
polydeoxyribonucleotide
no
no
(DG)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DA)(DT)(DC)(DG)
GGCTCAATATCG
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
FRUIT FLY
sample
7227
DROSOPHILA MELANOGASTER
469008
ESCHERICHIA COLI
BL21(DE3)
PET13A
-5.359
1
19
B
1
C
26
-8.077
B_DC1:DG26_C
1
17.704
0.112
-0.584
-0.060
-7.528
1
19
B
2
C
25
-4.187
B_DG2:DC25_C
2
-0.663
-1.232
-0.459
-0.319
0.490
1
20
B
3
C
24
-6.579
B_DA3:DT24_C
3
-0.815
-0.183
-0.097
-0.002
13.391
1
20
B
4
C
23
-9.654
B_DT4:DA23_C
4
-3.226
0.568
-0.276
-0.079
-9.121
1
20
B
5
C
22
-8.872
B_DA5:DT22_C
5
5.513
-0.268
0.223
-0.030
0.633
1
20
B
6
C
21
-2.673
B_DT6:DA21_C
6
5.418
0.520
0.367
-0.084
-10.687
1
19
B
10
C
19
-6.437
B_DG10:DC19_C
7
17.351
-0.845
0.138
-0.181
6.512
1
20
B
11
C
18
1.642
B_DA11:DT18_C
8
0.510
-0.612
0.672
-0.109
16.817
1
19
B
12
C
17
-5.700
B_DG12:DC17_C
9
-0.733
-0.076
0.516
0.070
13.833
1
19
B
13
C
16
-7.579
B_DC13:DG16_C
10
-21.466
-0.095
0.255
0.008
-5.773
1
19
B
14
C
15
3.090
B_DC14:DG15_C
11
16.107
1.164
0.717
-0.172
3.719
37.320
B
B
1
2
-4.389
C
C
26
25
3.688
-2.805
0.121
-0.527
BB_DC1DG2:DC25DG26_CC
1
1.259
-1.969
37.197
-0.404
-0.001
3.156
34.202
B
B
2
3
5.392
C
C
25
24
3.133
3.160
-1.000
-0.620
BB_DG2DA3:DT24DC25_CC
2
-3.898
6.651
33.843
-1.537
1.106
2.865
32.252
B
B
3
4
10.110
C
C
24
23
3.001
5.587
-0.416
-0.405
BB_DA3DT4:DA23DT24_CC
3
1.674
-3.029
31.734
-1.626
1.018
3.037
51.483
B
B
4
5
63.413
C
C
23
22
4.751
45.679
-0.343
0.825
BB_DT4DA5:DT22DA23_CC
4
-2.535
3.519
24.274
-4.329
0.102
3.083
30.790
B
B
5
6
4.847
C
C
22
21
3.124
2.569
0.457
-0.002
BB_DA5DT6:DA21DT22_CC
5
-1.738
3.278
30.637
-0.481
-1.184
3.404
28.742
B
B
10
11
7.805
C
C
19
18
3.158
3.842
-1.010
1.097
BB_DG10DA11:DT18DC19_CC
6
-5.325
10.819
27.998
1.332
0.818
3.143
32.208
B
B
11
12
-1.139
C
C
18
17
3.133
-0.632
-0.036
-0.629
BB_DA11DG12:DC17DT18_CC
7
0.502
-0.904
32.198
-1.025
0.150
3.266
35.108
B
B
12
13
-5.868
C
C
17
16
3.330
-3.531
-0.682
-0.062
BB_DG12DC13:DG16DC17_CC
8
2.467
-4.100
34.851
0.432
1.505
5.592
42.780
B
B
13
14
37.399
C
C
16
15
4.864
25.538
1.246
3.099
BB_DC13DC14:DG15DG16_CC
9
-4.730
6.927
34.292
-0.340
-2.558
repository
Initial release
Version format compliance
Version format compliance
1
0
2001-03-05
1
1
2011-05-08
1
2
2011-07-13
CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DEOXYRIBONUCLEIC ACID
PDBE
Y
PDBE
2000-08-29
REL
LOW VALUES OF THE NOE ENERGY TERM AND PROTEIN LOCATED WITHIN MINOR GROOVE OF DNA
50
10
NOESY
TOCSY
COSY
15N-HSQC
3D CBCA(CO)NH
3D 15N NOESY-HSQC
3D 13C NOESY-HSQC
3D HCCH-TOCSY
LOW
6.0
pH
293
K
REFINEMENT DETAILS WILL BE FOUND IN THE PAPER
SIMULATED ANNEALING, MINIMIZATION
1
BRUNGER, MACKERELL
refinement
X-PLOR 3.851, CHARMM
24
structure solution
XPLOR
3.851
structure solution
CHARMM
24
500
Bruker
AMX
600
Bruker
DMX
800
Bruker
Avance
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
ASP
3
n
3
ASP
3
A
LYS
4
n
4
LYS
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
LEU
9
n
9
LEU
9
A
SER
10
n
10
SER
10
A
ALA
11
n
11
ALA
11
A
TYR
12
n
12
TYR
12
A
MET
13
n
13
MET
13
A
LEU
14
n
14
LEU
14
A
TRP
15
n
15
TRP
15
A
LEU
16
n
16
LEU
16
A
ASN
17
n
17
ASN
17
A
SER
18
n
18
SER
18
A
ALA
19
n
19
ALA
19
A
ARG
20
n
20
ARG
20
A
GLU
21
n
21
GLU
21
A
SER
22
n
22
SER
22
A
ILE
23
n
23
ILE
23
A
LYS
24
n
24
LYS
24
A
ARG
25
n
25
ARG
25
A
GLU
26
n
26
GLU
26
A
ASN
27
n
27
ASN
27
A
PRO
28
n
28
PRO
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
THR
33
n
33
THR
33
A
GLU
34
n
34
GLU
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
LYS
37
n
37
LYS
37
A
ARG
38
n
38
ARG
38
A
GLY
39
n
39
GLY
39
A
GLY
40
n
40
GLY
40
A
GLU
41
n
41
GLU
41
A
LEU
42
n
42
LEU
42
A
TRP
43
n
43
TRP
43
A
ARG
44
n
44
ARG
44
A
ALA
45
n
45
ALA
45
A
MET
46
n
46
MET
46
A
LYS
47
n
47
LYS
47
A
ASP
48
n
48
ASP
48
A
LYS
49
n
49
LYS
49
A
SER
50
n
50
SER
50
A
GLU
51
n
51
GLU
51
A
TRP
52
n
52
TRP
52
A
GLU
53
n
53
GLU
53
A
ALA
54
n
54
ALA
54
A
LYS
55
n
55
LYS
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
LYS
58
n
58
LYS
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
ASP
62
n
62
ASP
62
A
TYR
63
n
63
TYR
63
A
ASP
64
n
64
ASP
64
A
ARG
65
n
65
ARG
65
A
ALA
66
n
66
ALA
66
A
VAL
67
n
67
VAL
67
A
LYS
68
n
68
LYS
68
A
GLU
69
n
69
GLU
69
A
PHE
70
n
70
PHE
70
A
GLU
71
n
71
GLU
71
A
ALA
72
n
72
ALA
72
A
ASN
73
n
73
ASN
73
A
GLY
74
n
74
GLY
74
A
DC
1
n
1
DC
1
B
DG
2
n
2
DG
2
B
DA
3
n
3
DA
3
B
DT
4
n
4
DT
4
B
DA
5
n
5
DA
5
B
DT
6
n
6
DT
6
B
DT
7
n
7
DT
7
B
DA
8
n
8
DA
8
B
DA
9
n
9
DA
9
B
DG
10
n
10
DG
10
B
DA
11
n
11
DA
11
B
DG
12
n
12
DG
12
B
DC
13
n
13
DC
13
B
DC
14
n
14
DC
14
B
DG
15
n
1
DG
15
C
DG
16
n
2
DG
16
C
DC
17
n
3
DC
17
C
DT
18
n
4
DT
18
C
DC
19
n
5
DC
19
C
DA
20
n
6
DA
20
C
DA
21
n
7
DA
21
C
DT
22
n
8
DT
22
C
DA
23
n
9
DA
23
C
DT
24
n
10
DT
24
C
DC
25
n
11
DC
25
C
DG
26
n
12
DG
26
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
DA
5
0.061
SIDE CHAIN
1
B
DT
7
0.088
SIDE CHAIN
1
B
DA
8
0.063
SIDE CHAIN
1
C
DC
19
0.085
SIDE CHAIN
1
C
DC
25
0.077
SIDE CHAIN
2
B
DA
9
0.074
SIDE CHAIN
2
C
DC
25
0.091
SIDE CHAIN
3
B
DA
8
0.071
SIDE CHAIN
3
B
DG
12
0.047
SIDE CHAIN
3
C
DG
15
0.048
SIDE CHAIN
3
C
DT
18
0.075
SIDE CHAIN
3
C
DC
25
0.102
SIDE CHAIN
3
C
DG
26
0.050
SIDE CHAIN
4
B
DT
7
0.069
SIDE CHAIN
4
C
DC
19
0.081
SIDE CHAIN
4
C
DC
25
0.082
SIDE CHAIN
5
A
TYR
63
0.068
SIDE CHAIN
5
B
DT
7
0.065
SIDE CHAIN
5
C
DT
18
0.062
SIDE CHAIN
5
C
DC
25
0.106
SIDE CHAIN
6
C
DC
25
0.096
SIDE CHAIN
7
B
DG
12
0.052
SIDE CHAIN
7
C
DC
25
0.094
SIDE CHAIN
8
C
DA
20
0.080
SIDE CHAIN
8
C
DA
21
0.069
SIDE CHAIN
8
C
DC
25
0.067
SIDE CHAIN
9
B
DT
7
0.122
SIDE CHAIN
9
C
DC
25
0.094
SIDE CHAIN
10
C
DG
15
0.052
SIDE CHAIN
10
C
DC
25
0.091
SIDE CHAIN
1
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
6.32
0.70
119.90
126.22
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
1
3.87
0.60
119.90
123.77
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-3.64
0.60
128.60
124.96
B
B
B
C5
C6
O6
DG
DG
DG
2
2
2
N
1
7.02
0.60
118.60
125.62
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
1
7.25
0.60
118.60
125.85
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
1
2.05
0.30
108.30
110.35
B
B
B
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
6.63
0.60
118.60
125.23
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
1
6.70
0.60
118.60
125.30
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
1
6.51
0.70
119.90
126.41
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
1
3.77
0.60
119.90
123.67
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
1
6.85
0.60
118.60
125.45
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
1
1.81
0.30
108.30
110.11
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
6.26
0.70
119.90
126.16
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
1
3.65
0.60
119.90
123.55
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
1
6.17
0.70
119.90
126.07
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
1
3.63
0.60
119.90
123.53
C
C
C
N1
C6
O6
DG
DG
DG
15
15
15
N
1
6.23
0.70
119.90
126.13
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
1
3.63
0.60
119.90
123.53
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
1
7.09
0.60
118.60
125.69
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
1
7.18
0.60
118.60
125.78
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
1
7.40
0.60
118.60
126.00
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
1
2.54
0.30
108.30
110.84
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
1
6.39
0.70
119.90
126.29
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
1
3.67
0.60
119.90
123.57
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
2
3.41
0.30
108.30
111.71
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
6.29
0.70
119.90
126.19
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
2
3.91
0.60
119.90
123.81
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
2
6.83
0.60
118.60
125.43
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
2
7.13
0.60
118.60
125.73
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
2
4.20
0.30
108.30
112.50
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
2.05
0.30
108.30
110.35
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
2
6.83
0.60
118.60
125.43
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
2
6.89
0.60
118.60
125.49
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
2
5.93
0.70
119.90
125.83
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
2
3.70
0.60
119.90
123.60
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
2
6.83
0.60
118.60
125.43
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
2
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
6.26
0.70
119.90
126.16
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
2
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
2
6.47
0.70
119.90
126.37
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
2
6.15
0.70
119.90
126.05
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
2
3.64
0.60
119.90
123.54
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
2
7.01
0.60
118.60
125.61
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
2
6.97
0.60
118.60
125.57
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
2
7.30
0.60
118.60
125.90
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
2
2.79
0.30
108.30
111.09
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
2
6.45
0.70
119.90
126.35
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
2
3.62
0.60
119.90
123.52
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
3
3.04
0.30
108.30
111.34
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
6.44
0.70
119.90
126.34
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
3
3.94
0.60
119.90
123.84
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
3
-3.67
0.60
128.60
124.93
B
B
B
C5
C6
O6
DG
DG
DG
2
2
2
N
3
6.93
0.60
118.60
125.53
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
3
7.46
0.60
118.60
126.06
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
3
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
3
6.83
0.60
118.60
125.43
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
3
6.86
0.60
118.60
125.46
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
3
6.49
0.70
119.90
126.39
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
3
3.64
0.60
119.90
123.54
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
3
6.96
0.60
118.60
125.56
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
3
2.59
0.30
108.30
110.89
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
6.36
0.70
119.90
126.26
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
3
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
3
6.44
0.70
119.90
126.34
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
3
3.68
0.60
119.90
123.58
C
C
C
N1
C6
O6
DG
DG
DG
15
15
15
N
3
6.25
0.70
119.90
126.15
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
3
3.72
0.60
119.90
123.62
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
3
1.86
0.30
108.30
110.16
C
C
C
O4'
C1'
N1
DC
DC
DC
17
17
17
N
3
7.17
0.60
118.60
125.77
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
3
7.03
0.60
118.60
125.63
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
3
7.35
0.60
118.60
125.95
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
3
-4.81
0.80
123.70
118.89
C
C
C
C5
C6
N6
DA
DA
DA
23
23
23
N
3
3.16
0.30
108.30
111.46
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
3
6.38
0.70
119.90
126.28
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
3
3.67
0.60
119.90
123.57
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
4
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
6.30
0.70
119.90
126.20
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
4
3.83
0.60
119.90
123.73
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
4
7.13
0.60
118.60
125.73
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
4
7.27
0.60
118.60
125.87
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
4
3.92
0.30
108.30
112.22
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
6.95
0.60
118.60
125.55
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
4
6.86
0.60
118.60
125.46
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
4
6.23
0.70
119.90
126.13
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
4
6.85
0.60
118.60
125.45
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
4
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
6.33
0.70
119.90
126.23
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
4
3.64
0.60
119.90
123.54
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
4
6.17
0.70
119.90
126.07
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
4
6.32
0.70
119.90
126.22
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
4
3.66
0.60
119.90
123.56
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
4
6.98
0.60
118.60
125.58
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
4
7.11
0.60
118.60
125.71
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
4
7.23
0.60
118.60
125.83
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
4
2.71
0.30
108.30
111.01
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
4
6.27
0.70
119.90
126.17
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
4
3.60
0.60
119.90
123.50
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
5
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
6.14
0.70
119.90
126.04
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
5
3.88
0.60
119.90
123.78
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
5
6.92
0.60
118.60
125.52
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
5
7.06
0.60
118.60
125.66
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
5
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
3.73
0.30
108.30
112.03
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
7.03
0.60
118.60
125.63
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
5
6.95
0.60
118.60
125.55
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
5
6.35
0.70
119.90
126.25
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
5
3.66
0.60
119.90
123.56
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
5
6.96
0.60
118.60
125.56
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
5
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
6.30
0.70
119.90
126.20
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
5
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
5
4.33
0.70
118.00
122.33
B
B
B
N3
C4
N4
DC
DC
DC
13
13
13
N
5
6.38
0.70
119.90
126.28
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
5
6.30
0.70
119.90
126.20
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
5
3.72
0.60
119.90
123.62
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
5
7.03
0.60
118.60
125.63
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
5
7.03
0.60
118.60
125.63
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
5
7.17
0.60
118.60
125.77
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
5
2.83
0.30
108.30
111.13
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
5
6.35
0.70
119.90
126.25
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
5
3.65
0.60
119.90
123.55
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
6
2.37
0.30
108.30
110.67
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
5.80
0.70
119.90
125.70
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
6
3.74
0.60
119.90
123.64
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
6
6.97
0.60
118.60
125.57
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
6
7.32
0.60
118.60
125.92
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
6
3.17
0.30
108.30
111.47
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
6.87
0.60
118.60
125.47
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
6
6.80
0.60
118.60
125.40
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
6
6.46
0.70
119.90
126.36
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
6
3.76
0.60
119.90
123.66
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
6
6.82
0.60
118.60
125.42
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
6
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
6.50
0.70
119.90
126.40
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
6
4.23
0.70
118.00
122.23
B
B
B
N3
C4
N4
DC
DC
DC
13
13
13
N
6
6.34
0.70
119.90
126.24
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
6
5.87
0.70
119.90
125.77
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
6
3.60
0.60
119.90
123.50
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
6
2.43
0.30
108.30
110.73
C
C
C
O4'
C1'
N1
DC
DC
DC
17
17
17
N
6
6.82
0.60
118.60
125.42
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
6
7.10
0.60
118.60
125.70
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
6
7.38
0.60
118.60
125.98
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
6
2.47
0.30
108.30
110.77
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
6
6.58
0.70
119.90
126.48
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
6
3.61
0.60
119.90
123.51
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
7
2.50
0.30
108.30
110.80
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
6.39
0.70
119.90
126.29
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
7
3.93
0.60
119.90
123.83
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
7
-3.69
0.60
128.60
124.91
B
B
B
C5
C6
O6
DG
DG
DG
2
2
2
N
7
6.93
0.60
118.60
125.53
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
7
7.11
0.60
118.60
125.71
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
7
1.85
0.30
108.30
110.15
B
B
B
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
3.92
0.30
108.30
112.22
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
6.85
0.60
118.60
125.45
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
7
6.96
0.60
118.60
125.56
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
7
6.29
0.70
119.90
126.19
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
7
6.71
0.60
118.60
125.31
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
7
2.79
0.30
108.30
111.09
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
6.21
0.70
119.90
126.11
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
7
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
7
6.34
0.70
119.90
126.24
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
7
6.33
0.70
119.90
126.23
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
7
1.83
0.30
108.30
110.13
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
7
6.93
0.60
118.60
125.53
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
7
7.02
0.60
118.60
125.62
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
7
7.18
0.60
118.60
125.78
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
7
3.09
0.30
108.30
111.39
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
7
6.38
0.70
119.90
126.28
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
7
3.61
0.60
119.90
123.51
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
8
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
6.24
0.70
119.90
126.14
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
8
3.89
0.60
119.90
123.79
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
8
-3.60
0.60
128.60
125.00
B
B
B
C5
C6
O6
DG
DG
DG
2
2
2
N
8
6.95
0.60
118.60
125.55
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
8
7.36
0.60
118.60
125.96
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
8
6.50
0.30
108.30
114.80
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
7.03
0.60
118.60
125.63
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
8
10.73
1.20
119.70
130.43
B
B
B
C3'
O3'
P
DA
DA
DA
8
8
9
Y
8
6.87
0.60
118.60
125.47
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
8
6.19
0.70
119.90
126.09
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
8
3.68
0.60
119.90
123.58
B
B
B
N1
C6
O6
DG
DG
DG
10
10
10
N
8
7.01
0.60
118.60
125.61
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
8
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
8
6.11
0.70
119.90
126.01
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
8
3.64
0.60
119.90
123.54
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
8
6.23
0.70
119.90
126.13
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
8
6.17
0.70
119.90
126.07
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
8
3.61
0.60
119.90
123.51
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
8
6.33
0.60
118.60
124.93
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
8
7.20
0.60
118.60
125.80
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
8
7.28
0.60
118.60
125.88
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
8
2.51
0.30
108.30
110.81
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
8
6.44
0.70
119.90
126.34
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
8
3.65
0.60
119.90
123.55
C
C
C
N1
C6
O6
DG
DG
DG
26
26
26
N
9
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
6.37
0.70
119.90
126.27
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
9
3.92
0.60
119.90
123.82
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
9
7.01
0.60
118.60
125.61
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
9
7.42
0.60
118.60
126.02
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
9
-4.98
0.80
123.70
118.72
B
B
B
C5
C6
N6
DA
DA
DA
5
5
5
N
9
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N1
DT
DT
DT
6
6
6
N
9
5.59
0.30
108.30
113.89
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
6.53
0.60
118.60
125.13
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
9
6.66
0.60
118.60
125.26
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
9
6.40
0.70
119.90
126.30
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
9
6.85
0.60
118.60
125.45
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
9
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
6.36
0.70
119.90
126.26
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
9
6.19
0.70
119.90
126.09
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
9
3.61
0.60
119.90
123.51
C
C
C
N1
C6
O6
DG
DG
DG
15
15
15
N
9
6.08
0.70
119.90
125.98
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
9
3.72
0.60
119.90
123.62
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
9
2.26
0.30
108.30
110.56
C
C
C
O4'
C1'
N1
DC
DC
DC
17
17
17
N
9
1.88
0.30
108.30
110.18
C
C
C
O4'
C1'
N9
DA
DA
DA
20
20
20
N
9
7.22
0.60
118.60
125.82
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
9
7.23
0.60
118.60
125.83
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
9
7.45
0.60
118.60
126.05
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
9
2.75
0.30
108.30
111.05
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
9
6.27
0.70
119.90
126.17
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
10
3.18
0.30
108.30
111.48
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
6.21
0.70
119.90
126.11
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
10
3.82
0.60
119.90
123.72
B
B
B
N1
C6
O6
DG
DG
DG
2
2
2
N
10
6.90
0.60
118.60
125.50
B
B
B
N1
C6
N6
DA
DA
DA
3
3
3
N
10
7.35
0.60
118.60
125.95
B
B
B
N1
C6
N6
DA
DA
DA
5
5
5
N
10
3.41
0.30
108.30
111.71
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
6.79
0.60
118.60
125.39
B
B
B
N1
C6
N6
DA
DA
DA
8
8
8
N
10
6.90
0.60
118.60
125.50
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
10
6.49
0.70
119.90
126.39
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
10
7.00
0.60
118.60
125.60
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
10
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
6.28
0.70
119.90
126.18
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
10
6.42
0.70
119.90
126.32
C
C
C
N3
C2
N2
DG
DG
DG
15
15
15
N
10
6.24
0.70
119.90
126.14
C
C
C
N3
C2
N2
DG
DG
DG
16
16
16
N
10
3.68
0.60
119.90
123.58
C
C
C
N1
C6
O6
DG
DG
DG
16
16
16
N
10
1.87
0.30
108.30
110.17
C
C
C
O4'
C1'
N1
DC
DC
DC
17
17
17
N
10
1.81
0.30
108.30
110.11
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
10
6.87
0.60
118.60
125.47
C
C
C
N1
C6
N6
DA
DA
DA
20
20
20
N
10
7.29
0.60
118.60
125.89
C
C
C
N1
C6
N6
DA
DA
DA
21
21
21
N
10
7.31
0.60
118.60
125.91
C
C
C
N1
C6
N6
DA
DA
DA
23
23
23
N
10
2.43
0.30
108.30
110.73
C
C
C
O4'
C1'
N1
DC
DC
DC
25
25
25
N
10
6.36
0.70
119.90
126.26
C
C
C
N3
C2
N2
DG
DG
DG
26
26
26
N
1
B
B
N1
C2
DT
DT
4
4
0.051
0.008
1.376
1.427
N
1
B
B
N1
C2
DT
DT
6
6
0.054
0.008
1.376
1.430
N
1
B
B
N1
C2
DT
DT
7
7
0.054
0.008
1.376
1.430
N
1
C
C
N1
C2
DT
DT
18
18
0.051
0.008
1.376
1.427
N
1
C
C
N1
C2
DT
DT
22
22
0.052
0.008
1.376
1.428
N
1
C
C
N1
C2
DT
DT
24
24
0.052
0.008
1.376
1.428
N
2
B
B
N1
C2
DT
DT
4
4
0.051
0.008
1.376
1.427
N
2
B
B
N1
C2
DT
DT
6
6
0.051
0.008
1.376
1.427
N
2
B
B
N1
C2
DT
DT
7
7
0.055
0.008
1.376
1.431
N
2
C
C
N1
C2
DT
DT
18
18
0.050
0.008
1.376
1.426
N
2
C
C
N1
C2
DT
DT
22
22
0.051
0.008
1.376
1.427
N
2
C
C
N1
C2
DT
DT
24
24
0.051
0.008
1.376
1.427
N
3
B
B
N1
C2
DT
DT
4
4
0.054
0.008
1.376
1.430
N
3
B
B
N1
C2
DT
DT
6
6
0.054
0.008
1.376
1.430
N
3
B
B
N1
C2
DT
DT
7
7
0.055
0.008
1.376
1.431
N
3
C
C
N1
C2
DT
DT
18
18
0.051
0.008
1.376
1.427
N
3
C
C
N1
C2
DT
DT
22
22
0.052
0.008
1.376
1.428
N
3
C
C
N1
C2
DT
DT
24
24
0.052
0.008
1.376
1.428
N
4
B
B
N1
C2
DT
DT
4
4
0.053
0.008
1.376
1.429
N
4
B
B
N1
C2
DT
DT
6
6
0.051
0.008
1.376
1.427
N
4
B
B
N1
C2
DT
DT
7
7
0.057
0.008
1.376
1.433
N
4
C
C
N1
C2
DT
DT
18
18
0.051
0.008
1.376
1.427
N
4
C
C
N1
C2
DT
DT
22
22
0.052
0.008
1.376
1.428
N
4
C
C
N1
C2
DT
DT
24
24
0.052
0.008
1.376
1.428
N
5
B
B
N1
C2
DT
DT
4
4
0.054
0.008
1.376
1.430
N
5
B
B
N1
C2
DT
DT
6
6
0.052
0.008
1.376
1.428
N
5
B
B
N1
C2
DT
DT
7
7
0.055
0.008
1.376
1.431
N
5
C
C
N1
C2
DT
DT
18
18
0.052
0.008
1.376
1.428
N
5
C
C
N1
C2
DT
DT
22
22
0.050
0.008
1.376
1.426
N
5
C
C
N1
C2
DT
DT
24
24
0.051
0.008
1.376
1.427
N
6
B
B
N1
C2
DT
DT
4
4
0.050
0.008
1.376
1.426
N
6
B
B
N1
C2
DT
DT
6
6
0.051
0.008
1.376
1.427
N
6
B
B
N1
C2
DT
DT
7
7
0.055
0.008
1.376
1.431
N
6
C
C
N1
C2
DT
DT
18
18
0.051
0.008
1.376
1.427
N
6
C
C
N1
C2
DT
DT
22
22
0.052
0.008
1.376
1.428
N
6
C
C
N1
C2
DT
DT
24
24
0.053
0.008
1.376
1.429
N
7
B
B
N1
C2
DT
DT
4
4
0.053
0.008
1.376
1.429
N
7
B
B
N1
C2
DT
DT
6
6
0.053
0.008
1.376
1.429
N
7
B
B
N1
C2
DT
DT
7
7
0.056
0.008
1.376
1.432
N
7
C
C
N1
C2
DT
DT
18
18
0.050
0.008
1.376
1.426
N
7
C
C
N1
C2
DT
DT
22
22
0.054
0.008
1.376
1.430
N
7
C
C
N1
C2
DT
DT
24
24
0.053
0.008
1.376
1.429
N
8
B
B
N1
C2
DT
DT
4
4
0.054
0.008
1.376
1.430
N
8
B
B
N1
C2
DT
DT
6
6
0.050
0.008
1.376
1.426
N
8
B
B
N1
C2
DT
DT
7
7
0.067
0.008
1.376
1.443
N
8
B
B
N9
C4
DA
DA
9
9
0.037
0.006
1.374
1.411
N
8
C
C
N1
C2
DT
DT
18
18
0.053
0.008
1.376
1.429
N
8
C
C
N1
C2
DT
DT
22
22
0.051
0.008
1.376
1.427
N
8
C
C
N1
C2
DT
DT
24
24
0.051
0.008
1.376
1.427
N
9
B
B
N1
C2
DT
DT
4
4
0.051
0.008
1.376
1.427
N
9
B
B
N1
C2
DT
DT
6
6
0.053
0.008
1.376
1.429
N
9
B
B
N1
C2
DT
DT
7
7
0.055
0.008
1.376
1.431
N
9
C
C
N1
C2
DT
DT
18
18
0.050
0.008
1.376
1.426
N
9
C
C
N1
C2
DT
DT
22
22
0.053
0.008
1.376
1.429
N
9
C
C
N1
C2
DT
DT
24
24
0.054
0.008
1.376
1.430
N
10
B
B
N1
C2
DT
DT
4
4
0.052
0.008
1.376
1.428
N
10
B
B
N1
C2
DT
DT
6
6
0.052
0.008
1.376
1.428
N
10
B
B
N1
C2
DT
DT
7
7
0.054
0.008
1.376
1.430
N
10
C
C
N1
C2
DT
DT
18
18
0.051
0.008
1.376
1.427
N
10
C
C
N1
C2
DT
DT
22
22
0.052
0.008
1.376
1.428
N
10
C
C
N1
C2
DT
DT
24
24
0.052
0.008
1.376
1.428
N
1
A
MET
46
-132.66
-75.49
1
A
LYS
47
-136.50
-123.54
2
A
MET
46
-123.34
-60.87
2
A
LYS
47
-148.67
-98.87
2
A
ALA
72
-98.44
42.36
2
A
ASN
73
-127.63
-96.30
3
A
SER
2
-149.91
44.57
3
A
ASP
3
-103.66
-121.21
3
A
MET
46
-132.00
-150.63
3
A
LYS
47
-87.74
-106.54
4
A
MET
46
-116.02
-142.82
4
A
LYS
47
-104.67
-99.85
4
A
ALA
72
-93.84
58.26
5
A
SER
2
-147.35
-89.59
5
A
ALA
19
-97.37
53.09
5
A
MET
46
-123.22
-149.13
5
A
LYS
47
-99.41
-111.26
6
A
ARG
7
57.79
82.78
6
A
LEU
9
55.75
91.33
6
A
MET
46
-113.84
-137.91
6
A
LYS
47
-114.02
-120.93
7
A
SER
2
-110.78
-132.09
7
A
LYS
6
-120.40
-157.80
7
A
SER
10
-171.83
127.34
7
A
ALA
45
-107.03
73.35
7
A
MET
46
-117.59
-139.97
7
A
LYS
47
-117.21
-124.09
8
A
LYS
47
82.89
-71.79
9
A
ASP
3
55.74
-132.21
9
A
LYS
6
-116.72
-168.79
9
A
GLU
41
66.01
-27.45
9
A
MET
46
-106.52
-92.91
9
A
LYS
47
-145.53
-91.51
10
A
SER
2
-144.89
54.78
10
A
MET
46
-134.55
-154.51
10
A
LYS
47
-88.99
-100.69
10
A
PHE
70
-85.94
-72.92
10
A
ASN
73
-101.52
-137.68
HIGH MOBILITY GROUP PROTEIN D
HMG-D complexed to a bulge DNA
1
N
N
2
N
N
3
N
N
A
ALA
11
A
ALA
11
HELX_P
A
ASN
27
A
ASN
27
1
1
17
A
THR
33
A
THR
33
HELX_P
A
MET
46
A
MET
46
1
2
14
A
LYS
49
A
LYS
49
HELX_P
A
ASN
73
A
ASN
73
1
3
25
hydrog
WATSON-CRICK
B
DC
1
B
N3
DC
1
1_555
C
DG
26
C
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
1
B
N4
DC
1
1_555
C
DG
26
C
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
1
B
O2
DC
1
1_555
C
DG
26
C
N2
DG
12
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N1
DG
2
1_555
C
DC
25
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N2
DG
2
1_555
C
DC
25
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
B
O6
DG
2
1_555
C
DC
25
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DA
3
B
N1
DA
3
1_555
C
DT
24
C
N3
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
3
B
N6
DA
3
1_555
C
DT
24
C
O4
DT
10
1_555
hydrog
WATSON-CRICK
B
DT
4
B
N3
DT
4
1_555
C
DA
23
C
N1
DA
9
1_555
hydrog
WATSON-CRICK
B
DT
4
B
O4
DT
4
1_555
C
DA
23
C
N6
DA
9
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N1
DA
5
1_555
C
DT
22
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N6
DA
5
1_555
C
DT
22
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
B
DT
6
B
N3
DT
6
1_555
C
DA
21
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
6
B
O4
DT
6
1_555
C
DA
21
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N1
DG
10
1_555
C
DC
19
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N2
DG
10
1_555
C
DC
19
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
10
B
O6
DG
10
1_555
C
DC
19
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
B
DA
11
B
N1
DA
11
1_555
C
DT
18
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
DA
11
B
N6
DA
11
1_555
C
DT
18
C
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N1
DG
12
1_555
C
DC
17
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N2
DG
12
1_555
C
DC
17
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
12
B
O6
DG
12
1_555
C
DC
17
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DC
13
B
N3
DC
13
1_555
C
DG
16
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
13
B
N4
DC
13
1_555
C
DG
16
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
13
B
O2
DC
13
1_555
C
DG
16
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N3
DC
14
1_555
C
DG
15
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N4
DC
14
1_555
C
DG
15
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
14
B
O2
DC
14
1_555
C
DG
15
C
N2
DG
1
1_555
PROTEIN/DNA
PROTEIN/DNA, PROTEIN-DNA COMPLEX
HMGD_DROME
UNP
1
Q05783
1E7J
PDB
2
1E7J
1E7J
PDB
3
1E7J
1
74
1E7J
1
74
Q05783
A
1
1
74
1
14
1E7J
1
14
1E7J
B
2
1
14
15
26
1E7J
15
26
1E7J
C
3
1
12
1
P 1