1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Cerdan, R. Payet, D. Yang, J.-C. Travers, A.A. Neuhaus, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 10 504 10.1110/PS.35501 11344319 Hmg-D Complexed to a Bulge DNA: An NMR Model 2001 UK Structure STRUE6 2005 0969-2126 2 609 10.1016/S0969-2126(00)00063-0 7922039 The Solution Structure and Dynamics of the DNA-Binding Domain of Hmg-D from Drosophila Melanogaster 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8501.711 HIGH MOBILITY GROUP PROTEIN D HMG-D DOMAIN 1 man polymer 4288.817 DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3') 1 syn polymer 3662.404 DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3') 1 syn polymer HMG-D no no MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG A polypeptide(L) no no (DC)(DG)(DA)(DT)(DA)(DT)(DT)(DA)(DA)(DG)(DA)(DG)(DC)(DC) CGATATTAAGAGCC B polydeoxyribonucleotide no no (DG)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DA)(DT)(DC)(DG) GGCTCAATATCG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n FRUIT FLY sample 7227 DROSOPHILA MELANOGASTER 469008 ESCHERICHIA COLI BL21(DE3) PET13A -5.359 1 19 B 1 C 26 -8.077 B_DC1:DG26_C 1 17.704 0.112 -0.584 -0.060 -7.528 1 19 B 2 C 25 -4.187 B_DG2:DC25_C 2 -0.663 -1.232 -0.459 -0.319 0.490 1 20 B 3 C 24 -6.579 B_DA3:DT24_C 3 -0.815 -0.183 -0.097 -0.002 13.391 1 20 B 4 C 23 -9.654 B_DT4:DA23_C 4 -3.226 0.568 -0.276 -0.079 -9.121 1 20 B 5 C 22 -8.872 B_DA5:DT22_C 5 5.513 -0.268 0.223 -0.030 0.633 1 20 B 6 C 21 -2.673 B_DT6:DA21_C 6 5.418 0.520 0.367 -0.084 -10.687 1 19 B 10 C 19 -6.437 B_DG10:DC19_C 7 17.351 -0.845 0.138 -0.181 6.512 1 20 B 11 C 18 1.642 B_DA11:DT18_C 8 0.510 -0.612 0.672 -0.109 16.817 1 19 B 12 C 17 -5.700 B_DG12:DC17_C 9 -0.733 -0.076 0.516 0.070 13.833 1 19 B 13 C 16 -7.579 B_DC13:DG16_C 10 -21.466 -0.095 0.255 0.008 -5.773 1 19 B 14 C 15 3.090 B_DC14:DG15_C 11 16.107 1.164 0.717 -0.172 3.719 37.320 B B 1 2 -4.389 C C 26 25 3.688 -2.805 0.121 -0.527 BB_DC1DG2:DC25DG26_CC 1 1.259 -1.969 37.197 -0.404 -0.001 3.156 34.202 B B 2 3 5.392 C C 25 24 3.133 3.160 -1.000 -0.620 BB_DG2DA3:DT24DC25_CC 2 -3.898 6.651 33.843 -1.537 1.106 2.865 32.252 B B 3 4 10.110 C C 24 23 3.001 5.587 -0.416 -0.405 BB_DA3DT4:DA23DT24_CC 3 1.674 -3.029 31.734 -1.626 1.018 3.037 51.483 B B 4 5 63.413 C C 23 22 4.751 45.679 -0.343 0.825 BB_DT4DA5:DT22DA23_CC 4 -2.535 3.519 24.274 -4.329 0.102 3.083 30.790 B B 5 6 4.847 C C 22 21 3.124 2.569 0.457 -0.002 BB_DA5DT6:DA21DT22_CC 5 -1.738 3.278 30.637 -0.481 -1.184 3.404 28.742 B B 10 11 7.805 C C 19 18 3.158 3.842 -1.010 1.097 BB_DG10DA11:DT18DC19_CC 6 -5.325 10.819 27.998 1.332 0.818 3.143 32.208 B B 11 12 -1.139 C C 18 17 3.133 -0.632 -0.036 -0.629 BB_DA11DG12:DC17DT18_CC 7 0.502 -0.904 32.198 -1.025 0.150 3.266 35.108 B B 12 13 -5.868 C C 17 16 3.330 -3.531 -0.682 -0.062 BB_DG12DC13:DG16DC17_CC 8 2.467 -4.100 34.851 0.432 1.505 5.592 42.780 B B 13 14 37.399 C C 16 15 4.864 25.538 1.246 3.099 BB_DC13DC14:DG15DG16_CC 9 -4.730 6.927 34.292 -0.340 -2.558 repository Initial release Version format compliance Version format compliance 1 0 2001-03-05 1 1 2011-05-08 1 2 2011-07-13 CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DEOXYRIBONUCLEIC ACID PDBE Y PDBE 2000-08-29 REL LOW VALUES OF THE NOE ENERGY TERM AND PROTEIN LOCATED WITHIN MINOR GROOVE OF DNA 50 10 NOESY TOCSY COSY 15N-HSQC 3D CBCA(CO)NH 3D 15N NOESY-HSQC 3D 13C NOESY-HSQC 3D HCCH-TOCSY LOW 6.0 pH 293 K REFINEMENT DETAILS WILL BE FOUND IN THE PAPER SIMULATED ANNEALING, MINIMIZATION 1 BRUNGER, MACKERELL refinement X-PLOR 3.851, CHARMM 24 structure solution XPLOR 3.851 structure solution CHARMM 24 500 Bruker AMX 600 Bruker DMX 800 Bruker Avance MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A ASP 3 n 3 ASP 3 A LYS 4 n 4 LYS 4 A PRO 5 n 5 PRO 5 A LYS 6 n 6 LYS 6 A ARG 7 n 7 ARG 7 A PRO 8 n 8 PRO 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A ALA 11 n 11 ALA 11 A TYR 12 n 12 TYR 12 A MET 13 n 13 MET 13 A LEU 14 n 14 LEU 14 A TRP 15 n 15 TRP 15 A LEU 16 n 16 LEU 16 A ASN 17 n 17 ASN 17 A SER 18 n 18 SER 18 A ALA 19 n 19 ALA 19 A ARG 20 n 20 ARG 20 A GLU 21 n 21 GLU 21 A SER 22 n 22 SER 22 A ILE 23 n 23 ILE 23 A LYS 24 n 24 LYS 24 A ARG 25 n 25 ARG 25 A GLU 26 n 26 GLU 26 A ASN 27 n 27 ASN 27 A PRO 28 n 28 PRO 28 A GLY 29 n 29 GLY 29 A ILE 30 n 30 ILE 30 A LYS 31 n 31 LYS 31 A VAL 32 n 32 VAL 32 A THR 33 n 33 THR 33 A GLU 34 n 34 GLU 34 A VAL 35 n 35 VAL 35 A ALA 36 n 36 ALA 36 A LYS 37 n 37 LYS 37 A ARG 38 n 38 ARG 38 A GLY 39 n 39 GLY 39 A GLY 40 n 40 GLY 40 A GLU 41 n 41 GLU 41 A LEU 42 n 42 LEU 42 A TRP 43 n 43 TRP 43 A ARG 44 n 44 ARG 44 A ALA 45 n 45 ALA 45 A MET 46 n 46 MET 46 A LYS 47 n 47 LYS 47 A ASP 48 n 48 ASP 48 A LYS 49 n 49 LYS 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A TRP 52 n 52 TRP 52 A GLU 53 n 53 GLU 53 A ALA 54 n 54 ALA 54 A LYS 55 n 55 LYS 55 A ALA 56 n 56 ALA 56 A ALA 57 n 57 ALA 57 A LYS 58 n 58 LYS 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A ASP 62 n 62 ASP 62 A TYR 63 n 63 TYR 63 A ASP 64 n 64 ASP 64 A ARG 65 n 65 ARG 65 A ALA 66 n 66 ALA 66 A VAL 67 n 67 VAL 67 A LYS 68 n 68 LYS 68 A GLU 69 n 69 GLU 69 A PHE 70 n 70 PHE 70 A GLU 71 n 71 GLU 71 A ALA 72 n 72 ALA 72 A ASN 73 n 73 ASN 73 A GLY 74 n 74 GLY 74 A DC 1 n 1 DC 1 B DG 2 n 2 DG 2 B DA 3 n 3 DA 3 B DT 4 n 4 DT 4 B DA 5 n 5 DA 5 B DT 6 n 6 DT 6 B DT 7 n 7 DT 7 B DA 8 n 8 DA 8 B DA 9 n 9 DA 9 B DG 10 n 10 DG 10 B DA 11 n 11 DA 11 B DG 12 n 12 DG 12 B DC 13 n 13 DC 13 B DC 14 n 14 DC 14 B DG 15 n 1 DG 15 C DG 16 n 2 DG 16 C DC 17 n 3 DC 17 C DT 18 n 4 DT 18 C DC 19 n 5 DC 19 C DA 20 n 6 DA 20 C DA 21 n 7 DA 21 C DT 22 n 8 DT 22 C DA 23 n 9 DA 23 C DT 24 n 10 DT 24 C DC 25 n 11 DC 25 C DG 26 n 12 DG 26 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B DA 5 0.061 SIDE CHAIN 1 B DT 7 0.088 SIDE CHAIN 1 B DA 8 0.063 SIDE CHAIN 1 C DC 19 0.085 SIDE CHAIN 1 C DC 25 0.077 SIDE CHAIN 2 B DA 9 0.074 SIDE CHAIN 2 C DC 25 0.091 SIDE CHAIN 3 B DA 8 0.071 SIDE CHAIN 3 B DG 12 0.047 SIDE CHAIN 3 C DG 15 0.048 SIDE CHAIN 3 C DT 18 0.075 SIDE CHAIN 3 C DC 25 0.102 SIDE CHAIN 3 C DG 26 0.050 SIDE CHAIN 4 B DT 7 0.069 SIDE CHAIN 4 C DC 19 0.081 SIDE CHAIN 4 C DC 25 0.082 SIDE CHAIN 5 A TYR 63 0.068 SIDE CHAIN 5 B DT 7 0.065 SIDE CHAIN 5 C DT 18 0.062 SIDE CHAIN 5 C DC 25 0.106 SIDE CHAIN 6 C DC 25 0.096 SIDE CHAIN 7 B DG 12 0.052 SIDE CHAIN 7 C DC 25 0.094 SIDE CHAIN 8 C DA 20 0.080 SIDE CHAIN 8 C DA 21 0.069 SIDE CHAIN 8 C DC 25 0.067 SIDE CHAIN 9 B DT 7 0.122 SIDE CHAIN 9 C DC 25 0.094 SIDE CHAIN 10 C DG 15 0.052 SIDE CHAIN 10 C DC 25 0.091 SIDE CHAIN 1 2.76 0.30 108.30 111.06 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 6.32 0.70 119.90 126.22 B B B N3 C2 N2 DG DG DG 2 2 2 N 1 3.87 0.60 119.90 123.77 B B B N1 C6 O6 DG DG DG 2 2 2 N 1 -3.64 0.60 128.60 124.96 B B B C5 C6 O6 DG DG DG 2 2 2 N 1 7.02 0.60 118.60 125.62 B B B N1 C6 N6 DA DA DA 3 3 3 N 1 7.25 0.60 118.60 125.85 B B B N1 C6 N6 DA DA DA 5 5 5 N 1 2.05 0.30 108.30 110.35 B B B O4' C1' N1 DT DT DT 6 6 6 N 1 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DT DT DT 7 7 7 N 1 6.63 0.60 118.60 125.23 B B B N1 C6 N6 DA DA DA 8 8 8 N 1 6.70 0.60 118.60 125.30 B B B N1 C6 N6 DA DA DA 9 9 9 N 1 6.51 0.70 119.90 126.41 B B B N3 C2 N2 DG DG DG 10 10 10 N 1 3.77 0.60 119.90 123.67 B B B N1 C6 O6 DG DG DG 10 10 10 N 1 6.85 0.60 118.60 125.45 B B B N1 C6 N6 DA DA DA 11 11 11 N 1 1.81 0.30 108.30 110.11 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 6.26 0.70 119.90 126.16 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 3.65 0.60 119.90 123.55 B B B N1 C6 O6 DG DG DG 12 12 12 N 1 6.17 0.70 119.90 126.07 C C C N3 C2 N2 DG DG DG 15 15 15 N 1 3.63 0.60 119.90 123.53 C C C N1 C6 O6 DG DG DG 15 15 15 N 1 6.23 0.70 119.90 126.13 C C C N3 C2 N2 DG DG DG 16 16 16 N 1 3.63 0.60 119.90 123.53 C C C N1 C6 O6 DG DG DG 16 16 16 N 1 7.09 0.60 118.60 125.69 C C C N1 C6 N6 DA DA DA 20 20 20 N 1 7.18 0.60 118.60 125.78 C C C N1 C6 N6 DA DA DA 21 21 21 N 1 7.40 0.60 118.60 126.00 C C C N1 C6 N6 DA DA DA 23 23 23 N 1 2.54 0.30 108.30 110.84 C C C O4' C1' N1 DC DC DC 25 25 25 N 1 6.39 0.70 119.90 126.29 C C C N3 C2 N2 DG DG DG 26 26 26 N 1 3.67 0.60 119.90 123.57 C C C N1 C6 O6 DG DG DG 26 26 26 N 2 3.41 0.30 108.30 111.71 B B B O4' C1' N1 DC DC DC 1 1 1 N 2 6.29 0.70 119.90 126.19 B B B N3 C2 N2 DG DG DG 2 2 2 N 2 3.91 0.60 119.90 123.81 B B B N1 C6 O6 DG DG DG 2 2 2 N 2 6.83 0.60 118.60 125.43 B B B N1 C6 N6 DA DA DA 3 3 3 N 2 7.13 0.60 118.60 125.73 B B B N1 C6 N6 DA DA DA 5 5 5 N 2 4.20 0.30 108.30 112.50 B B B O4' C1' N1 DT DT DT 7 7 7 N 2 2.05 0.30 108.30 110.35 B B B O4' C1' N9 DA DA DA 8 8 8 N 2 6.83 0.60 118.60 125.43 B B B N1 C6 N6 DA DA DA 8 8 8 N 2 6.89 0.60 118.60 125.49 B B B N1 C6 N6 DA DA DA 9 9 9 N 2 5.93 0.70 119.90 125.83 B B B N3 C2 N2 DG DG DG 10 10 10 N 2 3.70 0.60 119.90 123.60 B B B N1 C6 O6 DG DG DG 10 10 10 N 2 6.83 0.60 118.60 125.43 B B B N1 C6 N6 DA DA DA 11 11 11 N 2 2.33 0.30 108.30 110.63 B B B O4' C1' N9 DG DG DG 12 12 12 N 2 6.26 0.70 119.90 126.16 B B B N3 C2 N2 DG DG DG 12 12 12 N 2 2.07 0.30 108.30 110.37 B B B O4' C1' N1 DC DC DC 13 13 13 N 2 6.47 0.70 119.90 126.37 C C C N3 C2 N2 DG DG DG 15 15 15 N 2 6.15 0.70 119.90 126.05 C C C N3 C2 N2 DG DG DG 16 16 16 N 2 3.64 0.60 119.90 123.54 C C C N1 C6 O6 DG DG DG 16 16 16 N 2 7.01 0.60 118.60 125.61 C C C N1 C6 N6 DA DA DA 20 20 20 N 2 6.97 0.60 118.60 125.57 C C C N1 C6 N6 DA DA DA 21 21 21 N 2 7.30 0.60 118.60 125.90 C C C N1 C6 N6 DA DA DA 23 23 23 N 2 2.79 0.30 108.30 111.09 C C C O4' C1' N1 DC DC DC 25 25 25 N 2 6.45 0.70 119.90 126.35 C C C N3 C2 N2 DG DG DG 26 26 26 N 2 3.62 0.60 119.90 123.52 C C C N1 C6 O6 DG DG DG 26 26 26 N 3 3.04 0.30 108.30 111.34 B B B O4' C1' N1 DC DC DC 1 1 1 N 3 6.44 0.70 119.90 126.34 B B B N3 C2 N2 DG DG DG 2 2 2 N 3 3.94 0.60 119.90 123.84 B B B N1 C6 O6 DG DG DG 2 2 2 N 3 -3.67 0.60 128.60 124.93 B B B C5 C6 O6 DG DG DG 2 2 2 N 3 6.93 0.60 118.60 125.53 B B B N1 C6 N6 DA DA DA 3 3 3 N 3 7.46 0.60 118.60 126.06 B B B N1 C6 N6 DA DA DA 5 5 5 N 3 2.16 0.30 108.30 110.46 B B B O4' C1' N1 DT DT DT 6 6 6 N 3 3.88 0.30 108.30 112.18 B B B O4' C1' N1 DT DT DT 7 7 7 N 3 1.88 0.30 108.30 110.18 B B B O4' C1' N9 DA DA DA 8 8 8 N 3 6.83 0.60 118.60 125.43 B B B N1 C6 N6 DA DA DA 8 8 8 N 3 6.86 0.60 118.60 125.46 B B B N1 C6 N6 DA DA DA 9 9 9 N 3 6.49 0.70 119.90 126.39 B B B N3 C2 N2 DG DG DG 10 10 10 N 3 3.64 0.60 119.90 123.54 B B B N1 C6 O6 DG DG DG 10 10 10 N 3 6.96 0.60 118.60 125.56 B B B N1 C6 N6 DA DA DA 11 11 11 N 3 2.59 0.30 108.30 110.89 B B B O4' C1' N9 DG DG DG 12 12 12 N 3 6.36 0.70 119.90 126.26 B B B N3 C2 N2 DG DG DG 12 12 12 N 3 2.13 0.30 108.30 110.43 B B B O4' C1' N1 DC DC DC 13 13 13 N 3 6.44 0.70 119.90 126.34 C C C N3 C2 N2 DG DG DG 15 15 15 N 3 3.68 0.60 119.90 123.58 C C C N1 C6 O6 DG DG DG 15 15 15 N 3 6.25 0.70 119.90 126.15 C C C N3 C2 N2 DG DG DG 16 16 16 N 3 3.72 0.60 119.90 123.62 C C C N1 C6 O6 DG DG DG 16 16 16 N 3 1.86 0.30 108.30 110.16 C C C O4' C1' N1 DC DC DC 17 17 17 N 3 7.17 0.60 118.60 125.77 C C C N1 C6 N6 DA DA DA 20 20 20 N 3 7.03 0.60 118.60 125.63 C C C N1 C6 N6 DA DA DA 21 21 21 N 3 7.35 0.60 118.60 125.95 C C C N1 C6 N6 DA DA DA 23 23 23 N 3 -4.81 0.80 123.70 118.89 C C C C5 C6 N6 DA DA DA 23 23 23 N 3 3.16 0.30 108.30 111.46 C C C O4' C1' N1 DC DC DC 25 25 25 N 3 6.38 0.70 119.90 126.28 C C C N3 C2 N2 DG DG DG 26 26 26 N 3 3.67 0.60 119.90 123.57 C C C N1 C6 O6 DG DG DG 26 26 26 N 4 2.88 0.30 108.30 111.18 B B B O4' C1' N1 DC DC DC 1 1 1 N 4 6.30 0.70 119.90 126.20 B B B N3 C2 N2 DG DG DG 2 2 2 N 4 3.83 0.60 119.90 123.73 B B B N1 C6 O6 DG DG DG 2 2 2 N 4 7.13 0.60 118.60 125.73 B B B N1 C6 N6 DA DA DA 3 3 3 N 4 7.27 0.60 118.60 125.87 B B B N1 C6 N6 DA DA DA 5 5 5 N 4 3.92 0.30 108.30 112.22 B B B O4' C1' N1 DT DT DT 7 7 7 N 4 6.95 0.60 118.60 125.55 B B B N1 C6 N6 DA DA DA 8 8 8 N 4 6.86 0.60 118.60 125.46 B B B N1 C6 N6 DA DA DA 9 9 9 N 4 6.23 0.70 119.90 126.13 B B B N3 C2 N2 DG DG DG 10 10 10 N 4 6.85 0.60 118.60 125.45 B B B N1 C6 N6 DA DA DA 11 11 11 N 4 2.06 0.30 108.30 110.36 B B B O4' C1' N9 DG DG DG 12 12 12 N 4 6.33 0.70 119.90 126.23 B B B N3 C2 N2 DG DG DG 12 12 12 N 4 3.64 0.60 119.90 123.54 B B B N1 C6 O6 DG DG DG 12 12 12 N 4 6.17 0.70 119.90 126.07 C C C N3 C2 N2 DG DG DG 15 15 15 N 4 6.32 0.70 119.90 126.22 C C C N3 C2 N2 DG DG DG 16 16 16 N 4 3.66 0.60 119.90 123.56 C C C N1 C6 O6 DG DG DG 16 16 16 N 4 6.98 0.60 118.60 125.58 C C C N1 C6 N6 DA DA DA 20 20 20 N 4 7.11 0.60 118.60 125.71 C C C N1 C6 N6 DA DA DA 21 21 21 N 4 7.23 0.60 118.60 125.83 C C C N1 C6 N6 DA DA DA 23 23 23 N 4 2.71 0.30 108.30 111.01 C C C O4' C1' N1 DC DC DC 25 25 25 N 4 6.27 0.70 119.90 126.17 C C C N3 C2 N2 DG DG DG 26 26 26 N 4 3.60 0.60 119.90 123.50 C C C N1 C6 O6 DG DG DG 26 26 26 N 5 1.83 0.30 108.30 110.13 B B B O4' C1' N1 DC DC DC 1 1 1 N 5 6.14 0.70 119.90 126.04 B B B N3 C2 N2 DG DG DG 2 2 2 N 5 3.88 0.60 119.90 123.78 B B B N1 C6 O6 DG DG DG 2 2 2 N 5 6.92 0.60 118.60 125.52 B B B N1 C6 N6 DA DA DA 3 3 3 N 5 7.06 0.60 118.60 125.66 B B B N1 C6 N6 DA DA DA 5 5 5 N 5 1.93 0.30 108.30 110.23 B B B O4' C1' N1 DT DT DT 6 6 6 N 5 3.73 0.30 108.30 112.03 B B B O4' C1' N1 DT DT DT 7 7 7 N 5 7.03 0.60 118.60 125.63 B B B N1 C6 N6 DA DA DA 8 8 8 N 5 6.95 0.60 118.60 125.55 B B B N1 C6 N6 DA DA DA 9 9 9 N 5 6.35 0.70 119.90 126.25 B B B N3 C2 N2 DG DG DG 10 10 10 N 5 3.66 0.60 119.90 123.56 B B B N1 C6 O6 DG DG DG 10 10 10 N 5 6.96 0.60 118.60 125.56 B B B N1 C6 N6 DA DA DA 11 11 11 N 5 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 12 12 12 N 5 6.30 0.70 119.90 126.20 B B B N3 C2 N2 DG DG DG 12 12 12 N 5 2.11 0.30 108.30 110.41 B B B O4' C1' N1 DC DC DC 13 13 13 N 5 4.33 0.70 118.00 122.33 B B B N3 C4 N4 DC DC DC 13 13 13 N 5 6.38 0.70 119.90 126.28 C C C N3 C2 N2 DG DG DG 15 15 15 N 5 6.30 0.70 119.90 126.20 C C C N3 C2 N2 DG DG DG 16 16 16 N 5 3.72 0.60 119.90 123.62 C C C N1 C6 O6 DG DG DG 16 16 16 N 5 7.03 0.60 118.60 125.63 C C C N1 C6 N6 DA DA DA 20 20 20 N 5 7.03 0.60 118.60 125.63 C C C N1 C6 N6 DA DA DA 21 21 21 N 5 7.17 0.60 118.60 125.77 C C C N1 C6 N6 DA DA DA 23 23 23 N 5 2.83 0.30 108.30 111.13 C C C O4' C1' N1 DC DC DC 25 25 25 N 5 6.35 0.70 119.90 126.25 C C C N3 C2 N2 DG DG DG 26 26 26 N 5 3.65 0.60 119.90 123.55 C C C N1 C6 O6 DG DG DG 26 26 26 N 6 2.37 0.30 108.30 110.67 B B B O4' C1' N1 DC DC DC 1 1 1 N 6 5.80 0.70 119.90 125.70 B B B N3 C2 N2 DG DG DG 2 2 2 N 6 3.74 0.60 119.90 123.64 B B B N1 C6 O6 DG DG DG 2 2 2 N 6 6.97 0.60 118.60 125.57 B B B N1 C6 N6 DA DA DA 3 3 3 N 6 7.32 0.60 118.60 125.92 B B B N1 C6 N6 DA DA DA 5 5 5 N 6 3.17 0.30 108.30 111.47 B B B O4' C1' N1 DT DT DT 7 7 7 N 6 6.87 0.60 118.60 125.47 B B B N1 C6 N6 DA DA DA 8 8 8 N 6 6.80 0.60 118.60 125.40 B B B N1 C6 N6 DA DA DA 9 9 9 N 6 6.46 0.70 119.90 126.36 B B B N3 C2 N2 DG DG DG 10 10 10 N 6 3.76 0.60 119.90 123.66 B B B N1 C6 O6 DG DG DG 10 10 10 N 6 6.82 0.60 118.60 125.42 B B B N1 C6 N6 DA DA DA 11 11 11 N 6 2.24 0.30 108.30 110.54 B B B O4' C1' N9 DG DG DG 12 12 12 N 6 6.50 0.70 119.90 126.40 B B B N3 C2 N2 DG DG DG 12 12 12 N 6 4.23 0.70 118.00 122.23 B B B N3 C4 N4 DC DC DC 13 13 13 N 6 6.34 0.70 119.90 126.24 C C C N3 C2 N2 DG DG DG 15 15 15 N 6 5.87 0.70 119.90 125.77 C C C N3 C2 N2 DG DG DG 16 16 16 N 6 3.60 0.60 119.90 123.50 C C C N1 C6 O6 DG DG DG 16 16 16 N 6 2.43 0.30 108.30 110.73 C C C O4' C1' N1 DC DC DC 17 17 17 N 6 6.82 0.60 118.60 125.42 C C C N1 C6 N6 DA DA DA 20 20 20 N 6 7.10 0.60 118.60 125.70 C C C N1 C6 N6 DA DA DA 21 21 21 N 6 7.38 0.60 118.60 125.98 C C C N1 C6 N6 DA DA DA 23 23 23 N 6 2.47 0.30 108.30 110.77 C C C O4' C1' N1 DC DC DC 25 25 25 N 6 6.58 0.70 119.90 126.48 C C C N3 C2 N2 DG DG DG 26 26 26 N 6 3.61 0.60 119.90 123.51 C C C N1 C6 O6 DG DG DG 26 26 26 N 7 2.50 0.30 108.30 110.80 B B B O4' C1' N1 DC DC DC 1 1 1 N 7 6.39 0.70 119.90 126.29 B B B N3 C2 N2 DG DG DG 2 2 2 N 7 3.93 0.60 119.90 123.83 B B B N1 C6 O6 DG DG DG 2 2 2 N 7 -3.69 0.60 128.60 124.91 B B B C5 C6 O6 DG DG DG 2 2 2 N 7 6.93 0.60 118.60 125.53 B B B N1 C6 N6 DA DA DA 3 3 3 N 7 7.11 0.60 118.60 125.71 B B B N1 C6 N6 DA DA DA 5 5 5 N 7 1.85 0.30 108.30 110.15 B B B O4' C1' N1 DT DT DT 6 6 6 N 7 3.92 0.30 108.30 112.22 B B B O4' C1' N1 DT DT DT 7 7 7 N 7 6.85 0.60 118.60 125.45 B B B N1 C6 N6 DA DA DA 8 8 8 N 7 6.96 0.60 118.60 125.56 B B B N1 C6 N6 DA DA DA 9 9 9 N 7 6.29 0.70 119.90 126.19 B B B N3 C2 N2 DG DG DG 10 10 10 N 7 6.71 0.60 118.60 125.31 B B B N1 C6 N6 DA DA DA 11 11 11 N 7 2.79 0.30 108.30 111.09 B B B O4' C1' N9 DG DG DG 12 12 12 N 7 6.21 0.70 119.90 126.11 B B B N3 C2 N2 DG DG DG 12 12 12 N 7 1.89 0.30 108.30 110.19 B B B O4' C1' N1 DC DC DC 13 13 13 N 7 6.34 0.70 119.90 126.24 C C C N3 C2 N2 DG DG DG 15 15 15 N 7 6.33 0.70 119.90 126.23 C C C N3 C2 N2 DG DG DG 16 16 16 N 7 1.83 0.30 108.30 110.13 C C C O4' C1' N1 DT DT DT 18 18 18 N 7 6.93 0.60 118.60 125.53 C C C N1 C6 N6 DA DA DA 20 20 20 N 7 7.02 0.60 118.60 125.62 C C C N1 C6 N6 DA DA DA 21 21 21 N 7 7.18 0.60 118.60 125.78 C C C N1 C6 N6 DA DA DA 23 23 23 N 7 3.09 0.30 108.30 111.39 C C C O4' C1' N1 DC DC DC 25 25 25 N 7 6.38 0.70 119.90 126.28 C C C N3 C2 N2 DG DG DG 26 26 26 N 7 3.61 0.60 119.90 123.51 C C C N1 C6 O6 DG DG DG 26 26 26 N 8 2.98 0.30 108.30 111.28 B B B O4' C1' N1 DC DC DC 1 1 1 N 8 6.24 0.70 119.90 126.14 B B B N3 C2 N2 DG DG DG 2 2 2 N 8 3.89 0.60 119.90 123.79 B B B N1 C6 O6 DG DG DG 2 2 2 N 8 -3.60 0.60 128.60 125.00 B B B C5 C6 O6 DG DG DG 2 2 2 N 8 6.95 0.60 118.60 125.55 B B B N1 C6 N6 DA DA DA 3 3 3 N 8 7.36 0.60 118.60 125.96 B B B N1 C6 N6 DA DA DA 5 5 5 N 8 6.50 0.30 108.30 114.80 B B B O4' C1' N1 DT DT DT 7 7 7 N 8 7.03 0.60 118.60 125.63 B B B N1 C6 N6 DA DA DA 8 8 8 N 8 10.73 1.20 119.70 130.43 B B B C3' O3' P DA DA DA 8 8 9 Y 8 6.87 0.60 118.60 125.47 B B B N1 C6 N6 DA DA DA 9 9 9 N 8 6.19 0.70 119.90 126.09 B B B N3 C2 N2 DG DG DG 10 10 10 N 8 3.68 0.60 119.90 123.58 B B B N1 C6 O6 DG DG DG 10 10 10 N 8 7.01 0.60 118.60 125.61 B B B N1 C6 N6 DA DA DA 11 11 11 N 8 1.88 0.30 108.30 110.18 B B B O4' C1' N9 DG DG DG 12 12 12 N 8 6.11 0.70 119.90 126.01 B B B N3 C2 N2 DG DG DG 12 12 12 N 8 3.64 0.60 119.90 123.54 B B B N1 C6 O6 DG DG DG 12 12 12 N 8 6.23 0.70 119.90 126.13 C C C N3 C2 N2 DG DG DG 15 15 15 N 8 6.17 0.70 119.90 126.07 C C C N3 C2 N2 DG DG DG 16 16 16 N 8 3.61 0.60 119.90 123.51 C C C N1 C6 O6 DG DG DG 16 16 16 N 8 6.33 0.60 118.60 124.93 C C C N1 C6 N6 DA DA DA 20 20 20 N 8 7.20 0.60 118.60 125.80 C C C N1 C6 N6 DA DA DA 21 21 21 N 8 7.28 0.60 118.60 125.88 C C C N1 C6 N6 DA DA DA 23 23 23 N 8 2.51 0.30 108.30 110.81 C C C O4' C1' N1 DC DC DC 25 25 25 N 8 6.44 0.70 119.90 126.34 C C C N3 C2 N2 DG DG DG 26 26 26 N 8 3.65 0.60 119.90 123.55 C C C N1 C6 O6 DG DG DG 26 26 26 N 9 2.51 0.30 108.30 110.81 B B B O4' C1' N1 DC DC DC 1 1 1 N 9 6.37 0.70 119.90 126.27 B B B N3 C2 N2 DG DG DG 2 2 2 N 9 3.92 0.60 119.90 123.82 B B B N1 C6 O6 DG DG DG 2 2 2 N 9 7.01 0.60 118.60 125.61 B B B N1 C6 N6 DA DA DA 3 3 3 N 9 7.42 0.60 118.60 126.02 B B B N1 C6 N6 DA DA DA 5 5 5 N 9 -4.98 0.80 123.70 118.72 B B B C5 C6 N6 DA DA DA 5 5 5 N 9 2.09 0.30 108.30 110.39 B B B O4' C1' N1 DT DT DT 6 6 6 N 9 5.59 0.30 108.30 113.89 B B B O4' C1' N1 DT DT DT 7 7 7 N 9 6.53 0.60 118.60 125.13 B B B N1 C6 N6 DA DA DA 8 8 8 N 9 6.66 0.60 118.60 125.26 B B B N1 C6 N6 DA DA DA 9 9 9 N 9 6.40 0.70 119.90 126.30 B B B N3 C2 N2 DG DG DG 10 10 10 N 9 6.85 0.60 118.60 125.45 B B B N1 C6 N6 DA DA DA 11 11 11 N 9 2.01 0.30 108.30 110.31 B B B O4' C1' N9 DG DG DG 12 12 12 N 9 6.36 0.70 119.90 126.26 B B B N3 C2 N2 DG DG DG 12 12 12 N 9 6.19 0.70 119.90 126.09 C C C N3 C2 N2 DG DG DG 15 15 15 N 9 3.61 0.60 119.90 123.51 C C C N1 C6 O6 DG DG DG 15 15 15 N 9 6.08 0.70 119.90 125.98 C C C N3 C2 N2 DG DG DG 16 16 16 N 9 3.72 0.60 119.90 123.62 C C C N1 C6 O6 DG DG DG 16 16 16 N 9 2.26 0.30 108.30 110.56 C C C O4' C1' N1 DC DC DC 17 17 17 N 9 1.88 0.30 108.30 110.18 C C C O4' C1' N9 DA DA DA 20 20 20 N 9 7.22 0.60 118.60 125.82 C C C N1 C6 N6 DA DA DA 20 20 20 N 9 7.23 0.60 118.60 125.83 C C C N1 C6 N6 DA DA DA 21 21 21 N 9 7.45 0.60 118.60 126.05 C C C N1 C6 N6 DA DA DA 23 23 23 N 9 2.75 0.30 108.30 111.05 C C C O4' C1' N1 DC DC DC 25 25 25 N 9 6.27 0.70 119.90 126.17 C C C N3 C2 N2 DG DG DG 26 26 26 N 10 3.18 0.30 108.30 111.48 B B B O4' C1' N1 DC DC DC 1 1 1 N 10 6.21 0.70 119.90 126.11 B B B N3 C2 N2 DG DG DG 2 2 2 N 10 3.82 0.60 119.90 123.72 B B B N1 C6 O6 DG DG DG 2 2 2 N 10 6.90 0.60 118.60 125.50 B B B N1 C6 N6 DA DA DA 3 3 3 N 10 7.35 0.60 118.60 125.95 B B B N1 C6 N6 DA DA DA 5 5 5 N 10 3.41 0.30 108.30 111.71 B B B O4' C1' N1 DT DT DT 7 7 7 N 10 6.79 0.60 118.60 125.39 B B B N1 C6 N6 DA DA DA 8 8 8 N 10 6.90 0.60 118.60 125.50 B B B N1 C6 N6 DA DA DA 9 9 9 N 10 6.49 0.70 119.90 126.39 B B B N3 C2 N2 DG DG DG 10 10 10 N 10 7.00 0.60 118.60 125.60 B B B N1 C6 N6 DA DA DA 11 11 11 N 10 2.30 0.30 108.30 110.60 B B B O4' C1' N9 DG DG DG 12 12 12 N 10 6.28 0.70 119.90 126.18 B B B N3 C2 N2 DG DG DG 12 12 12 N 10 6.42 0.70 119.90 126.32 C C C N3 C2 N2 DG DG DG 15 15 15 N 10 6.24 0.70 119.90 126.14 C C C N3 C2 N2 DG DG DG 16 16 16 N 10 3.68 0.60 119.90 123.58 C C C N1 C6 O6 DG DG DG 16 16 16 N 10 1.87 0.30 108.30 110.17 C C C O4' C1' N1 DC DC DC 17 17 17 N 10 1.81 0.30 108.30 110.11 C C C O4' C1' N1 DT DT DT 18 18 18 N 10 6.87 0.60 118.60 125.47 C C C N1 C6 N6 DA DA DA 20 20 20 N 10 7.29 0.60 118.60 125.89 C C C N1 C6 N6 DA DA DA 21 21 21 N 10 7.31 0.60 118.60 125.91 C C C N1 C6 N6 DA DA DA 23 23 23 N 10 2.43 0.30 108.30 110.73 C C C O4' C1' N1 DC DC DC 25 25 25 N 10 6.36 0.70 119.90 126.26 C C C N3 C2 N2 DG DG DG 26 26 26 N 1 B B N1 C2 DT DT 4 4 0.051 0.008 1.376 1.427 N 1 B B N1 C2 DT DT 6 6 0.054 0.008 1.376 1.430 N 1 B B N1 C2 DT DT 7 7 0.054 0.008 1.376 1.430 N 1 C C N1 C2 DT DT 18 18 0.051 0.008 1.376 1.427 N 1 C C N1 C2 DT DT 22 22 0.052 0.008 1.376 1.428 N 1 C C N1 C2 DT DT 24 24 0.052 0.008 1.376 1.428 N 2 B B N1 C2 DT DT 4 4 0.051 0.008 1.376 1.427 N 2 B B N1 C2 DT DT 6 6 0.051 0.008 1.376 1.427 N 2 B B N1 C2 DT DT 7 7 0.055 0.008 1.376 1.431 N 2 C C N1 C2 DT DT 18 18 0.050 0.008 1.376 1.426 N 2 C C N1 C2 DT DT 22 22 0.051 0.008 1.376 1.427 N 2 C C N1 C2 DT DT 24 24 0.051 0.008 1.376 1.427 N 3 B B N1 C2 DT DT 4 4 0.054 0.008 1.376 1.430 N 3 B B N1 C2 DT DT 6 6 0.054 0.008 1.376 1.430 N 3 B B N1 C2 DT DT 7 7 0.055 0.008 1.376 1.431 N 3 C C N1 C2 DT DT 18 18 0.051 0.008 1.376 1.427 N 3 C C N1 C2 DT DT 22 22 0.052 0.008 1.376 1.428 N 3 C C N1 C2 DT DT 24 24 0.052 0.008 1.376 1.428 N 4 B B N1 C2 DT DT 4 4 0.053 0.008 1.376 1.429 N 4 B B N1 C2 DT DT 6 6 0.051 0.008 1.376 1.427 N 4 B B N1 C2 DT DT 7 7 0.057 0.008 1.376 1.433 N 4 C C N1 C2 DT DT 18 18 0.051 0.008 1.376 1.427 N 4 C C N1 C2 DT DT 22 22 0.052 0.008 1.376 1.428 N 4 C C N1 C2 DT DT 24 24 0.052 0.008 1.376 1.428 N 5 B B N1 C2 DT DT 4 4 0.054 0.008 1.376 1.430 N 5 B B N1 C2 DT DT 6 6 0.052 0.008 1.376 1.428 N 5 B B N1 C2 DT DT 7 7 0.055 0.008 1.376 1.431 N 5 C C N1 C2 DT DT 18 18 0.052 0.008 1.376 1.428 N 5 C C N1 C2 DT DT 22 22 0.050 0.008 1.376 1.426 N 5 C C N1 C2 DT DT 24 24 0.051 0.008 1.376 1.427 N 6 B B N1 C2 DT DT 4 4 0.050 0.008 1.376 1.426 N 6 B B N1 C2 DT DT 6 6 0.051 0.008 1.376 1.427 N 6 B B N1 C2 DT DT 7 7 0.055 0.008 1.376 1.431 N 6 C C N1 C2 DT DT 18 18 0.051 0.008 1.376 1.427 N 6 C C N1 C2 DT DT 22 22 0.052 0.008 1.376 1.428 N 6 C C N1 C2 DT DT 24 24 0.053 0.008 1.376 1.429 N 7 B B N1 C2 DT DT 4 4 0.053 0.008 1.376 1.429 N 7 B B N1 C2 DT DT 6 6 0.053 0.008 1.376 1.429 N 7 B B N1 C2 DT DT 7 7 0.056 0.008 1.376 1.432 N 7 C C N1 C2 DT DT 18 18 0.050 0.008 1.376 1.426 N 7 C C N1 C2 DT DT 22 22 0.054 0.008 1.376 1.430 N 7 C C N1 C2 DT DT 24 24 0.053 0.008 1.376 1.429 N 8 B B N1 C2 DT DT 4 4 0.054 0.008 1.376 1.430 N 8 B B N1 C2 DT DT 6 6 0.050 0.008 1.376 1.426 N 8 B B N1 C2 DT DT 7 7 0.067 0.008 1.376 1.443 N 8 B B N9 C4 DA DA 9 9 0.037 0.006 1.374 1.411 N 8 C C N1 C2 DT DT 18 18 0.053 0.008 1.376 1.429 N 8 C C N1 C2 DT DT 22 22 0.051 0.008 1.376 1.427 N 8 C C N1 C2 DT DT 24 24 0.051 0.008 1.376 1.427 N 9 B B N1 C2 DT DT 4 4 0.051 0.008 1.376 1.427 N 9 B B N1 C2 DT DT 6 6 0.053 0.008 1.376 1.429 N 9 B B N1 C2 DT DT 7 7 0.055 0.008 1.376 1.431 N 9 C C N1 C2 DT DT 18 18 0.050 0.008 1.376 1.426 N 9 C C N1 C2 DT DT 22 22 0.053 0.008 1.376 1.429 N 9 C C N1 C2 DT DT 24 24 0.054 0.008 1.376 1.430 N 10 B B N1 C2 DT DT 4 4 0.052 0.008 1.376 1.428 N 10 B B N1 C2 DT DT 6 6 0.052 0.008 1.376 1.428 N 10 B B N1 C2 DT DT 7 7 0.054 0.008 1.376 1.430 N 10 C C N1 C2 DT DT 18 18 0.051 0.008 1.376 1.427 N 10 C C N1 C2 DT DT 22 22 0.052 0.008 1.376 1.428 N 10 C C N1 C2 DT DT 24 24 0.052 0.008 1.376 1.428 N 1 A MET 46 -132.66 -75.49 1 A LYS 47 -136.50 -123.54 2 A MET 46 -123.34 -60.87 2 A LYS 47 -148.67 -98.87 2 A ALA 72 -98.44 42.36 2 A ASN 73 -127.63 -96.30 3 A SER 2 -149.91 44.57 3 A ASP 3 -103.66 -121.21 3 A MET 46 -132.00 -150.63 3 A LYS 47 -87.74 -106.54 4 A MET 46 -116.02 -142.82 4 A LYS 47 -104.67 -99.85 4 A ALA 72 -93.84 58.26 5 A SER 2 -147.35 -89.59 5 A ALA 19 -97.37 53.09 5 A MET 46 -123.22 -149.13 5 A LYS 47 -99.41 -111.26 6 A ARG 7 57.79 82.78 6 A LEU 9 55.75 91.33 6 A MET 46 -113.84 -137.91 6 A LYS 47 -114.02 -120.93 7 A SER 2 -110.78 -132.09 7 A LYS 6 -120.40 -157.80 7 A SER 10 -171.83 127.34 7 A ALA 45 -107.03 73.35 7 A MET 46 -117.59 -139.97 7 A LYS 47 -117.21 -124.09 8 A LYS 47 82.89 -71.79 9 A ASP 3 55.74 -132.21 9 A LYS 6 -116.72 -168.79 9 A GLU 41 66.01 -27.45 9 A MET 46 -106.52 -92.91 9 A LYS 47 -145.53 -91.51 10 A SER 2 -144.89 54.78 10 A MET 46 -134.55 -154.51 10 A LYS 47 -88.99 -100.69 10 A PHE 70 -85.94 -72.92 10 A ASN 73 -101.52 -137.68 HIGH MOBILITY GROUP PROTEIN D HMG-D complexed to a bulge DNA 1 N N 2 N N 3 N N A ALA 11 A ALA 11 HELX_P A ASN 27 A ASN 27 1 1 17 A THR 33 A THR 33 HELX_P A MET 46 A MET 46 1 2 14 A LYS 49 A LYS 49 HELX_P A ASN 73 A ASN 73 1 3 25 hydrog WATSON-CRICK B DC 1 B N3 DC 1 1_555 C DG 26 C N1 DG 12 1_555 hydrog WATSON-CRICK B DC 1 B N4 DC 1 1_555 C DG 26 C O6 DG 12 1_555 hydrog WATSON-CRICK B DC 1 B O2 DC 1 1_555 C DG 26 C N2 DG 12 1_555 hydrog WATSON-CRICK B DG 2 B N1 DG 2 1_555 C DC 25 C N3 DC 11 1_555 hydrog WATSON-CRICK B DG 2 B N2 DG 2 1_555 C DC 25 C O2 DC 11 1_555 hydrog WATSON-CRICK B DG 2 B O6 DG 2 1_555 C DC 25 C N4 DC 11 1_555 hydrog WATSON-CRICK B DA 3 B N1 DA 3 1_555 C DT 24 C N3 DT 10 1_555 hydrog WATSON-CRICK B DA 3 B N6 DA 3 1_555 C DT 24 C O4 DT 10 1_555 hydrog WATSON-CRICK B DT 4 B N3 DT 4 1_555 C DA 23 C N1 DA 9 1_555 hydrog WATSON-CRICK B DT 4 B O4 DT 4 1_555 C DA 23 C N6 DA 9 1_555 hydrog WATSON-CRICK B DA 5 B N1 DA 5 1_555 C DT 22 C N3 DT 8 1_555 hydrog WATSON-CRICK B DA 5 B N6 DA 5 1_555 C DT 22 C O4 DT 8 1_555 hydrog WATSON-CRICK B DT 6 B N3 DT 6 1_555 C DA 21 C N1 DA 7 1_555 hydrog WATSON-CRICK B DT 6 B O4 DT 6 1_555 C DA 21 C N6 DA 7 1_555 hydrog WATSON-CRICK B DG 10 B N1 DG 10 1_555 C DC 19 C N3 DC 5 1_555 hydrog WATSON-CRICK B DG 10 B N2 DG 10 1_555 C DC 19 C O2 DC 5 1_555 hydrog WATSON-CRICK B DG 10 B O6 DG 10 1_555 C DC 19 C N4 DC 5 1_555 hydrog WATSON-CRICK B DA 11 B N1 DA 11 1_555 C DT 18 C N3 DT 4 1_555 hydrog WATSON-CRICK B DA 11 B N6 DA 11 1_555 C DT 18 C O4 DT 4 1_555 hydrog WATSON-CRICK B DG 12 B N1 DG 12 1_555 C DC 17 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 12 B N2 DG 12 1_555 C DC 17 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 12 B O6 DG 12 1_555 C DC 17 C N4 DC 3 1_555 hydrog WATSON-CRICK B DC 13 B N3 DC 13 1_555 C DG 16 C N1 DG 2 1_555 hydrog WATSON-CRICK B DC 13 B N4 DC 13 1_555 C DG 16 C O6 DG 2 1_555 hydrog WATSON-CRICK B DC 13 B O2 DC 13 1_555 C DG 16 C N2 DG 2 1_555 hydrog WATSON-CRICK B DC 14 B N3 DC 14 1_555 C DG 15 C N1 DG 1 1_555 hydrog WATSON-CRICK B DC 14 B N4 DC 14 1_555 C DG 15 C O6 DG 1 1_555 hydrog WATSON-CRICK B DC 14 B O2 DC 14 1_555 C DG 15 C N2 DG 1 1_555 PROTEIN/DNA PROTEIN/DNA, PROTEIN-DNA COMPLEX HMGD_DROME UNP 1 Q05783 1E7J PDB 2 1E7J 1E7J PDB 3 1E7J 1 74 1E7J 1 74 Q05783 A 1 1 74 1 14 1E7J 1 14 1E7J B 2 1 14 15 26 1E7J 15 26 1E7J C 3 1 12 1 P 1