0.027669
0.000000
0.011134
0.000000
0.018540
0.000000
0.000000
0.000000
0.026055
0.00000
0.00000
0.00000
Pasqualato, S.
Kerjan, P.
Renault, L.
Menetrey, J.
Mirande, M.
Cherfils, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
111.92
90.00
36.141
53.938
41.371
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
Hg 2
200.590
MERCURY (II) ION
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
HG
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
20
570
10.1093/EMBOJ/20.3.570
11157763
Structure of the Emapii Domain of Human Aminoacyl-tRNA Synthetase Complex Reveals Evolutionary Dimeric Mimicry
2001
10.2210/pdb1e7z/pdb
pdb_00001e7z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2000-04-26
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
19297.332
ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II
C-TERMINAL DOMAIN/RNA BINDING DOMAIN RESIDUES 147-312
1
man
polymer
200.590
MERCURY (II) ION
2
syn
non-polymer
18.015
water
142
nat
water
no
no
AKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAM
VMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTM
SNSGIKLEHHHHHH
AKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAM
VMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTM
SNSGIKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
1
1.94
36.55
7.50
pH 7.50
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2000-11-27
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
PDBE
Y
PDBE
2000-09-13
REL
REL
HG
MERCURY (II) ION
HOH
water
1FL0
PDB ENTRY 1FL0
PDB
experimental model
HG
500
2
HG
HG
500
A
HG
501
2
HG
HG
501
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
ALA
147
n
1
ALA
147
A
LYS
148
n
2
LYS
148
A
PRO
149
n
3
PRO
149
A
ILE
150
n
4
ILE
150
A
ASP
151
n
5
ASP
151
A
VAL
152
n
6
VAL
152
A
SER
153
n
7
SER
153
A
ARG
154
n
8
ARG
154
A
LEU
155
n
9
LEU
155
A
ASP
156
n
10
ASP
156
A
LEU
157
n
11
LEU
157
A
ARG
158
n
12
ARG
158
A
ILE
159
n
13
ILE
159
A
GLY
160
n
14
GLY
160
A
CYS
161
n
15
CYS
161
A
ILE
162
n
16
ILE
162
A
ILE
163
n
17
ILE
163
A
THR
164
n
18
THR
164
A
ALA
165
n
19
ALA
165
A
ARG
166
n
20
ARG
166
A
LYS
167
n
21
LYS
167
A
HIS
168
n
22
HIS
168
A
PRO
169
n
23
PRO
169
A
ASP
170
n
24
ASP
170
A
ALA
171
n
25
ALA
171
A
ASP
172
n
26
ASP
172
A
SER
173
n
27
SER
173
A
LEU
174
n
28
LEU
174
A
TYR
175
n
29
TYR
175
A
VAL
176
n
30
VAL
176
A
GLU
177
n
31
GLU
177
A
GLU
178
n
32
GLU
178
A
VAL
179
n
33
VAL
179
A
ASP
180
n
34
ASP
180
A
VAL
181
n
35
VAL
181
A
GLY
182
n
36
GLY
182
A
GLU
183
n
37
GLU
183
A
ILE
184
n
38
ILE
184
A
ALA
185
n
39
ALA
185
A
PRO
186
n
40
PRO
186
A
ARG
187
n
41
ARG
187
A
THR
188
n
42
THR
188
A
VAL
189
n
43
VAL
189
A
VAL
190
n
44
VAL
190
A
SER
191
n
45
SER
191
A
GLY
192
n
46
GLY
192
A
LEU
193
n
47
LEU
193
A
VAL
194
n
48
VAL
194
A
ASN
195
n
49
ASN
195
A
HIS
196
n
50
HIS
196
A
VAL
197
n
51
VAL
197
A
PRO
198
n
52
PRO
198
A
LEU
199
n
53
LEU
199
A
GLU
200
n
54
GLU
200
A
GLN
201
n
55
GLN
201
A
MET
202
n
56
MET
202
A
GLN
203
n
57
GLN
203
A
ASN
204
n
58
ASN
204
A
ARG
205
n
59
ARG
205
A
MET
206
n
60
MET
206
A
VAL
207
n
61
VAL
207
A
ILE
208
n
62
ILE
208
A
LEU
209
n
63
LEU
209
A
LEU
210
n
64
LEU
210
A
CYS
211
n
65
CYS
211
A
ASN
212
n
66
ASN
212
A
LEU
213
n
67
LEU
213
A
LYS
214
n
68
LYS
214
A
PRO
215
n
69
PRO
215
A
ALA
216
n
70
ALA
216
A
LYS
217
n
71
LYS
217
A
MET
218
n
72
MET
218
A
ARG
219
n
73
ARG
219
A
GLY
220
n
74
GLY
220
A
VAL
221
n
75
VAL
221
A
LEU
222
n
76
LEU
222
A
SER
223
n
77
SER
223
A
GLN
224
n
78
GLN
224
A
ALA
225
n
79
ALA
225
A
MET
226
n
80
MET
226
A
VAL
227
n
81
VAL
227
A
MET
228
n
82
MET
228
A
CYS
229
n
83
CYS
229
A
ALA
230
n
84
ALA
230
A
SER
231
n
85
SER
231
A
SER
232
n
86
SER
232
A
PRO
233
n
87
PRO
233
A
GLU
234
n
88
GLU
234
A
LYS
235
n
89
LYS
235
A
ILE
236
n
90
ILE
236
A
GLU
237
n
91
GLU
237
A
ILE
238
n
92
ILE
238
A
LEU
239
n
93
LEU
239
A
ALA
240
n
94
ALA
240
A
PRO
241
n
95
PRO
241
A
PRO
242
n
96
PRO
242
A
ASN
243
n
97
ASN
243
A
GLY
244
n
98
GLY
244
A
SER
245
n
99
SER
245
A
VAL
246
n
100
VAL
246
A
PRO
247
n
101
PRO
247
A
GLY
248
n
102
GLY
248
A
ASP
249
n
103
ASP
249
A
ARG
250
n
104
ARG
250
A
ILE
251
n
105
ILE
251
A
THR
252
n
106
THR
252
A
PHE
253
n
107
PHE
253
A
ASP
254
n
108
ASP
254
A
ALA
255
n
109
ALA
255
A
PHE
256
n
110
PHE
256
A
PRO
257
n
111
PRO
257
A
GLY
258
n
112
GLY
258
A
GLU
259
n
113
GLU
259
A
PRO
260
n
114
PRO
260
A
ASP
261
n
115
ASP
261
A
LYS
262
n
116
LYS
262
A
GLU
263
n
117
GLU
263
A
LEU
264
n
118
LEU
264
A
ASN
265
n
119
ASN
265
A
PRO
266
n
120
PRO
266
A
LYS
267
n
121
LYS
267
A
LYS
268
n
122
LYS
268
A
LYS
269
n
123
LYS
269
A
ILE
270
n
124
ILE
270
A
TRP
271
n
125
TRP
271
A
GLU
272
n
126
GLU
272
A
GLN
273
n
127
GLN
273
A
ILE
274
n
128
ILE
274
A
GLN
275
n
129
GLN
275
A
PRO
276
n
130
PRO
276
A
ASP
277
n
131
ASP
277
A
LEU
278
n
132
LEU
278
A
HIS
279
n
133
HIS
279
A
THR
280
n
134
THR
280
A
ASN
281
n
135
ASN
281
A
ASP
282
n
136
ASP
282
A
GLU
283
n
137
GLU
283
A
CYS
284
n
138
CYS
284
A
VAL
285
n
139
VAL
285
A
ALA
286
n
140
ALA
286
A
THR
287
n
141
THR
287
A
TYR
288
n
142
TYR
288
A
LYS
289
n
143
LYS
289
A
GLY
290
n
144
GLY
290
A
VAL
291
n
145
VAL
291
A
PRO
292
n
146
PRO
292
A
PHE
293
n
147
PHE
293
A
GLU
294
n
148
GLU
294
A
VAL
295
n
149
VAL
295
A
LYS
296
n
150
LYS
296
A
GLY
297
n
151
GLY
297
A
LYS
298
n
152
LYS
298
A
GLY
299
n
153
GLY
299
A
VAL
300
n
154
VAL
300
A
CYS
301
n
155
CYS
301
A
ARG
302
n
156
ARG
302
A
ALA
303
n
157
ALA
303
A
GLN
304
n
158
GLN
304
A
THR
305
n
159
THR
305
A
MET
306
n
160
MET
306
A
SER
307
n
161
SER
307
A
ASN
308
n
162
ASN
308
A
SER
309
n
163
SER
309
A
GLY
310
n
164
GLY
310
A
ILE
311
n
165
ILE
311
A
LYS
312
n
166
LYS
312
A
LEU
313
n
167
LEU
313
A
GLU
314
n
168
GLU
314
A
HIS
315
n
169
HIS
315
A
HIS
316
n
170
HIS
316
A
HIS
317
n
171
HIS
317
A
HIS
318
n
172
HIS
318
A
HIS
319
n
173
HIS
319
A
n
174
320
A
author_and_software_defined_assembly
PQS
1
monomeric
A
CYS
161
A
SG
CYS
15
1_555
A
HG
500
B
HG
HG
1_555
A
ASN
204
A
O
ASN
58
1_555
102.5
A
CYS
161
A
SG
CYS
15
1_555
A
HG
500
B
HG
HG
1_555
A
ASN
204
A
OD1
ASN
58
1_555
82.3
A
ASN
204
A
O
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
A
ASN
204
A
OD1
ASN
58
1_555
63.1
A
CYS
161
A
SG
CYS
15
1_555
A
HG
500
B
HG
HG
1_555
A
MET
206
A
SD
MET
60
1_555
95.9
A
ASN
204
A
O
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
A
MET
206
A
SD
MET
60
1_555
119.5
A
ASN
204
A
OD1
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
A
MET
206
A
SD
MET
60
1_555
177.2
A
CYS
161
A
SG
CYS
15
1_555
A
HG
500
B
HG
HG
1_555
A
HOH
2043
D
O
HOH
1_555
81.4
A
ASN
204
A
O
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
A
HOH
2043
D
O
HOH
1_555
159.1
A
ASN
204
A
OD1
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
A
HOH
2043
D
O
HOH
1_555
97.6
A
MET
206
A
SD
MET
60
1_555
A
HG
500
B
HG
HG
1_555
A
HOH
2043
D
O
HOH
1_555
80.0
A
GLU
283
A
O
GLU
137
1_555
A
HG
501
C
HG
HG
1_555
A
CYS
284
A
SG
CYS
138
1_555
84.8
A
GLU
283
A
O
GLU
137
1_555
A
HG
501
C
HG
HG
1_555
A
HOH
2112
D
O
HOH
1_555
105.4
A
CYS
284
A
SG
CYS
138
1_555
A
HG
501
C
HG
HG
1_555
A
HOH
2112
D
O
HOH
1_555
131.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
207
A
O
VAL
61
A
N
GLY
160
A
N
GLY
14
A
O
CYS
161
A
O
CYS
15
A
N
ASP
180
A
N
ASP
34
A
O
TYR
175
A
O
TYR
29
A
N
SER
191
A
N
SER
45
A
O
ALA
216
A
O
ALA
70
A
N
SER
223
A
N
SER
77
A
O
GLU
237
A
O
GLU
91
A
N
ALA
230
A
N
ALA
84
A
O
CYS
229
A
O
CYS
83
A
N
LYS
312
A
N
LYS
166
A
O
HIS
279
A
O
HIS
133
A
N
THR
287
A
N
THR
141
1
A
HIS
320
A
HIS
174
1
Y
1
A
ILE
150
-107.52
69.69
1
A
GLU
234
-80.16
-77.94
1
A
LYS
269
33.38
55.82
1
A
LEU
313
-143.97
16.98
1
A
GLU
314
-158.75
-65.92
1
A
HIS
315
-38.73
-20.08
1
A
HIS
316
-18.82
-27.92
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
ION.TOP
WATER_REP.PARAM
WATER.TOP
32.6
0.00
0.00
0.00
0.00
0.00
0.00
0.272
0.009
0.221
0.221
2.05
28.48
947
9020
10.5
96.4
RANDOM
7632586.78
1
RESTRAINED
THROUGHOUT
1.0
MOLECULAR REPLACEMENT
PDB ENTRY 1FL0
MLF
FLAT MODEL
62.1208
0.344836
0.35
0.28
5.00
0.32
0.27
2.05
28.48
142
1481
2
0
1337
0.005
1.5
25.5
0.94
1.54
1.50
2.50
2.00
1.93
2.00
2.87
2.50
0.349
0.027
0.296
2.18
173
1331
6
11.5
96.7
17.3
1.900
30.000
1E7Z
11716
0.000
0.04200
1
16.7000
3.500
99.4
1.90
1.97
0.18300
1
96.5
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
data scaling
TRUNCATE
phasing
CNS
1.0
Crystal structure of the EMAP2/RNA binding domain of the p43 protein from human aminoacyl-tRNA synthetase complex
1
N
N
2
N
N
2
N
N
3
N
N
A
ASP
151
A
ASP
5
HELX_P
A
LEU
155
A
LEU
9
5
1
5
A
PRO
198
A
PRO
52
HELX_P
A
GLN
203
A
GLN
57
1
2
6
A
ASN
265
A
ASN
119
HELX_P
A
LYS
268
A
LYS
122
5
3
4
A
LYS
269
A
LYS
123
HELX_P
A
GLN
275
A
GLN
129
1
4
7
metalc
2.411
A
CYS
161
A
SG
CYS
15
1_555
A
HG
500
B
HG
HG
1_555
metalc
3.269
A
ASN
204
A
O
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
metalc
2.982
A
ASN
204
A
OD1
ASN
58
1_555
A
HG
500
B
HG
HG
1_555
metalc
3.178
A
MET
206
A
SD
MET
60
1_555
A
HG
500
B
HG
HG
1_555
metalc
3.020
A
GLU
283
A
O
GLU
137
1_555
A
HG
501
C
HG
HG
1_555
metalc
2.740
A
CYS
284
A
SG
CYS
138
1_555
A
HG
501
C
HG
HG
1_555
metalc
3.202
A
HG
500
B
HG
HG
1_555
A
HOH
2043
D
O
HOH
1_555
metalc
3.513
A
HG
501
C
HG
HG
1_555
A
HOH
2112
D
O
HOH
1_555
RNA BINDING DOMAIN
RNA BINDING DOMAIN, OB-FOLD, TRNA SYNTHETASE COMPLEX
Q12904
UNP
1
Q12904
1E7Z
PDB
1
1E7Z
147
312
1E7Z
147
312
Q12904
A
1
1
166
313
320
1E7Z
313
320
1E7Z
A
2
167
174
1
SER
cloning artifact
ALA
147
1E7Z
A
Q12904
UNP
147
1
4
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
206
A
MET
60
A
LEU
210
A
LEU
64
A
LEU
157
A
LEU
11
A
LYS
167
A
LYS
21
A
TYR
175
A
TYR
29
A
ASP
180
A
ASP
34
A
ARG
187
A
ARG
41
A
SER
191
A
SER
45
A
ALA
216
A
ALA
70
A
MET
218
A
MET
72
A
VAL
221
A
VAL
75
A
SER
223
A
SER
77
A
ILE
236
A
ILE
90
A
ILE
238
A
ILE
92
A
CYS
229
A
CYS
83
A
SER
231
A
SER
85
A
GLY
310
A
GLY
164
A
LYS
312
A
LYS
166
A
LEU
278
A
LEU
132
A
THR
280
A
THR
134
A
ALA
286
A
ALA
140
A
TYR
288
A
TYR
142
BINDING SITE FOR RESIDUE HG A 500
A
HG
500
Software
3
BINDING SITE FOR RESIDUE HG A 501
A
HG
501
Software
3
A
CYS
161
A
CYS
15
3
1_555
A
ASN
204
A
ASN
58
3
1_555
A
MET
206
A
MET
60
3
1_555
A
GLU
283
A
GLU
137
3
1_555
A
CYS
284
A
CYS
138
3
1_555
A
ARG
302
A
ARG
156
3
1_555
4
P 1 21 1