1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Pickford, A.R.
Smith, S.P.
Staunton, D.
Boyd, J.
Campbell, I.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
20
1519
10.1093/EMBOJ/20.7.1519
11285216
The Hairpin Structure of the (6)F1(1)F2(2)F2 Fragment from Human Fibronectin Enhances Gelatin Binding
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
17871.625
FIBRONECTIN
6F11F22F2, RESIDUES 305-464
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
FN, COLD-INSOLUBLE GLOBULIN, CIG,
no
no
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHL
WCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHL
WCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
EXTRACELLULAR
9606
HOMO SAPIENS
SECRETED
4922
PICHIA PASTORIS
GS115
INTEGRATED PLASMID
PPIC9K
pdbx_nmr_spectrometer
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
pdbx_nmr_software
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Non-polymer description
Other
Structure summary
Version format compliance
Database references
Derived calculations
Data collection
Data collection
Derived calculations
Other
Structure summary
1
0
2000-10-15
1
1
2011-10-26
1
2
2012-11-28
1
3
2018-02-14
1
4
2020-07-29
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.type
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_mr
_pdbx_entity_nonpoly.name
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN
PDBE
Y
PDBE
2000-09-18
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
THE STRUCTURE WAS DETERMINED BY HETERONUCLEAR NMR SPECTROSCOPY ON UNIFORMLY 15N-LABELED 6F11F22F2.
1
2D [1H-1H] NOESY (60MS MIXIMG TIME)
3D [1H-15N] NOESY (60MS MIXING TIME)
HMQC-J.
4.5
pH
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
AB INITIO SIMULATED ANNEALING
2MM 6F11F22F2, 20MM PHOSPHATE BUFFER
BRUNGER ET AL.
refinement
CNS
0.9
structure solution
Felix
2.3
structure solution
NMRView
structure solution
CNS
750
Oxford
HOME-BUILT SPECTROMETER INCORPORATING OXFORD INSTRUMENTS MAGNET
NAG
161
2
NAG
NAG
161
A
TYR
1
n
1
TYR
1
A
GLY
2
n
2
GLY
2
A
HIS
3
n
3
HIS
3
A
CYS
4
n
4
CYS
4
A
VAL
5
n
5
VAL
5
A
THR
6
n
6
THR
6
A
ASP
7
n
7
ASP
7
A
SER
8
n
8
SER
8
A
GLY
9
n
9
GLY
9
A
VAL
10
n
10
VAL
10
A
VAL
11
n
11
VAL
11
A
TYR
12
n
12
TYR
12
A
SER
13
n
13
SER
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
MET
16
n
16
MET
16
A
GLN
17
n
17
GLN
17
A
TRP
18
n
18
TRP
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
THR
21
n
21
THR
21
A
GLN
22
n
22
GLN
22
A
GLY
23
n
23
GLY
23
A
ASN
24
n
24
ASN
24
A
LYS
25
n
25
LYS
25
A
GLN
26
n
26
GLN
26
A
MET
27
n
27
MET
27
A
LEU
28
n
28
LEU
28
A
CYS
29
n
29
CYS
29
A
THR
30
n
30
THR
30
A
CYS
31
n
31
CYS
31
A
LEU
32
n
32
LEU
32
A
GLY
33
n
33
GLY
33
A
ASN
34
n
34
ASN
34
A
GLY
35
n
35
GLY
35
A
VAL
36
n
36
VAL
36
A
SER
37
n
37
SER
37
A
CYS
38
n
38
CYS
38
A
GLN
39
n
39
GLN
39
A
GLU
40
n
40
GLU
40
A
THR
41
n
41
THR
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
THR
44
n
44
THR
44
A
GLN
45
n
45
GLN
45
A
THR
46
n
46
THR
46
A
TYR
47
n
47
TYR
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ASN
50
n
50
ASN
50
A
SER
51
n
51
SER
51
A
ASN
52
n
52
ASN
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
PRO
55
n
55
PRO
55
A
CYS
56
n
56
CYS
56
A
VAL
57
n
57
VAL
57
A
LEU
58
n
58
LEU
58
A
PRO
59
n
59
PRO
59
A
PHE
60
n
60
PHE
60
A
THR
61
n
61
THR
61
A
TYR
62
n
62
TYR
62
A
ASN
63
n
63
ASN
63
A
GLY
64
n
64
GLY
64
A
ARG
65
n
65
ARG
65
A
THR
66
n
66
THR
66
A
PHE
67
n
67
PHE
67
A
TYR
68
n
68
TYR
68
A
SER
69
n
69
SER
69
A
CYS
70
n
70
CYS
70
A
THR
71
n
71
THR
71
A
THR
72
n
72
THR
72
A
GLU
73
n
73
GLU
73
A
GLY
74
n
74
GLY
74
A
ARG
75
n
75
ARG
75
A
GLN
76
n
76
GLN
76
A
ASP
77
n
77
ASP
77
A
GLY
78
n
78
GLY
78
A
HIS
79
n
79
HIS
79
A
LEU
80
n
80
LEU
80
A
TRP
81
n
81
TRP
81
A
CYS
82
n
82
CYS
82
A
SER
83
n
83
SER
83
A
THR
84
n
84
THR
84
A
THR
85
n
85
THR
85
A
SER
86
n
86
SER
86
A
ASN
87
n
87
ASN
87
A
TYR
88
n
88
TYR
88
A
GLU
89
n
89
GLU
89
A
GLN
90
n
90
GLN
90
A
ASP
91
n
91
ASP
91
A
GLN
92
n
92
GLN
92
A
LYS
93
n
93
LYS
93
A
TYR
94
n
94
TYR
94
A
SER
95
n
95
SER
95
A
PHE
96
n
96
PHE
96
A
CYS
97
n
97
CYS
97
A
THR
98
n
98
THR
98
A
ASP
99
n
99
ASP
99
A
HIS
100
n
100
HIS
100
A
THR
101
n
101
THR
101
A
VAL
102
n
102
VAL
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
GLN
105
n
105
GLN
105
A
THR
106
n
106
THR
106
A
ARG
107
n
107
ARG
107
A
GLY
108
n
108
GLY
108
A
GLY
109
n
109
GLY
109
A
ASN
110
n
110
ASN
110
A
SER
111
n
111
SER
111
A
ASN
112
n
112
ASN
112
A
GLY
113
n
113
GLY
113
A
ALA
114
n
114
ALA
114
A
LEU
115
n
115
LEU
115
A
CYS
116
n
116
CYS
116
A
HIS
117
n
117
HIS
117
A
PHE
118
n
118
PHE
118
A
PRO
119
n
119
PRO
119
A
PHE
120
n
120
PHE
120
A
LEU
121
n
121
LEU
121
A
TYR
122
n
122
TYR
122
A
ASN
123
n
123
ASN
123
A
ASN
124
n
124
ASN
124
A
HIS
125
n
125
HIS
125
A
ASN
126
n
126
ASN
126
A
TYR
127
n
127
TYR
127
A
THR
128
n
128
THR
128
A
ASP
129
n
129
ASP
129
A
CYS
130
n
130
CYS
130
A
THR
131
n
131
THR
131
A
SER
132
n
132
SER
132
A
GLU
133
n
133
GLU
133
A
GLY
134
n
134
GLY
134
A
ARG
135
n
135
ARG
135
A
ARG
136
n
136
ARG
136
A
ASP
137
n
137
ASP
137
A
ASN
138
n
138
ASN
138
A
MET
139
n
139
MET
139
A
LYS
140
n
140
LYS
140
A
TRP
141
n
141
TRP
141
A
CYS
142
n
142
CYS
142
A
GLY
143
n
143
GLY
143
A
THR
144
n
144
THR
144
A
THR
145
n
145
THR
145
A
GLN
146
n
146
GLN
146
A
ASN
147
n
147
ASN
147
A
TYR
148
n
148
TYR
148
A
ASP
149
n
149
ASP
149
A
ALA
150
n
150
ALA
150
A
ASP
151
n
151
ASP
151
A
GLN
152
n
152
GLN
152
A
LYS
153
n
153
LYS
153
A
PHE
154
n
154
PHE
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
CYS
157
n
157
CYS
157
A
PRO
158
n
158
PRO
158
A
MET
159
n
159
MET
159
A
ALA
160
n
160
ALA
160
A
software_defined_assembly
PISA
1
monomeric
A
ASN
126
GLYCOSYLATION SITE
A
ASN
126
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
CYS
4
A
O
CYS
4
A
N
TYR
12
A
N
TYR
12
A
O
MET
16
A
O
MET
16
A
N
CYS
31
A
N
CYS
31
A
O
LEU
28
A
O
LEU
28
A
N
GLN
39
A
N
GLN
39
A
O
PHE
60
A
O
PHE
60
A
N
PHE
67
A
N
PHE
67
A
O
CYS
82
A
O
CYS
82
A
N
SER
95
A
N
SER
95
A
O
PHE
120
A
O
PHE
120
A
N
TYR
127
A
N
TYR
127
A
O
CYS
142
A
O
CYS
142
A
N
GLY
155
A
N
GLY
155
1
A
A
O
H
TYR
GLN
148
152
1.58
1
A
A
O
H
THR
SER
30
37
1.58
1
A
A
O
H
GLU
ALA
40
42
1.58
1
A
A
O
H
THR
ARG
72
75
1.60
1
A
HIS
3
54.61
160.09
1
A
ASP
7
64.64
-91.52
1
A
SER
8
-152.36
30.74
1
A
SER
13
-43.26
159.87
1
A
VAL
14
-50.47
173.91
1
A
TRP
18
-170.20
129.31
1
A
LEU
32
-143.18
24.08
1
A
GLU
40
-36.33
158.20
1
A
THR
41
-64.89
62.20
1
A
VAL
43
-47.65
-178.35
1
A
GLN
45
-63.11
68.63
1
A
TYR
47
-175.70
149.45
1
A
ASN
50
-89.68
32.82
1
A
SER
51
-142.27
12.11
1
A
GLU
54
-61.96
-174.39
1
A
VAL
57
-154.50
66.99
1
A
ASN
63
76.28
-11.32
1
A
THR
84
-95.53
30.15
1
A
THR
85
-172.88
131.93
1
A
TYR
88
-45.09
-74.33
1
A
ASP
99
33.00
39.34
1
A
HIS
100
33.54
43.96
1
A
THR
101
28.64
47.93
1
A
VAL
102
-38.88
149.22
1
A
ASN
110
-148.24
16.52
1
A
ASN
112
44.31
89.32
1
A
LEU
115
-64.89
84.31
1
A
ASN
124
48.48
24.99
1
A
ASN
126
-34.88
142.67
1
A
ASP
129
166.95
139.53
1
A
CYS
130
-49.14
86.41
1
A
SER
132
-109.75
53.83
1
A
ASN
138
-41.07
91.16
1
A
MET
139
-164.46
54.16
1
A
LYS
140
-36.36
142.60
1
A
PRO
158
-53.73
-176.27
FIBRONECTIN
MINIMIZED AVERAGE
Solution structure of 6F11F22F2, a compact three-module fragment of the gelatin-binding domain of human fibronectin
1
N
N
2
N
N
A
ASN
87
A
ASN
87
HELX_P
A
GLN
92
A
GLN
92
1
1
6
A
ASN
147
A
ASN
147
HELX_P
A
GLN
152
A
GLN
152
1
2
6
disulf
2.031
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
31
A
SG
CYS
31
1_555
disulf
2.030
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
38
A
SG
CYS
38
1_555
disulf
2.030
A
CYS
56
A
SG
CYS
56
1_555
A
CYS
82
A
SG
CYS
82
1_555
disulf
2.029
A
CYS
70
A
SG
CYS
70
1_555
A
CYS
97
A
SG
CYS
97
1_555
disulf
2.030
A
CYS
116
A
SG
CYS
116
1_555
A
CYS
142
A
SG
CYS
142
1_555
disulf
2.030
A
CYS
130
A
SG
CYS
130
1_555
A
CYS
157
A
SG
CYS
157
1_555
covale
1.454
one
N-Glycosylation
A
ASN
126
A
ND2
ASN
126
1_555
A
NAG
161
B
C1
NAG
1_555
CELL ADHESION
EXTRACELLULAR MATRIX GLYCOPROTEIN, CELL ADHESION
A
LEU
58
A
LEU
58
1
A
PRO
59
A
PRO
59
0.00
A
PHE
118
A
PHE
118
1
A
PRO
119
A
PRO
119
-0.04
FINC_HUMAN
UNP
1
P02751
305
464
1E8B
1
160
P02751
A
1
1
160
2
3
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
4
A
CYS
4
A
THR
6
A
THR
6
A
VAL
10
A
VAL
10
A
TYR
12
A
TYR
12
A
MET
16
A
MET
16
A
THR
21
A
THR
21
A
GLN
26
A
GLN
26
A
CYS
31
A
CYS
31
A
VAL
36
A
VAL
36
A
GLU
40
A
GLU
40
A
PHE
60
A
PHE
60
A
TYR
62
A
TYR
62
A
ARG
65
A
ARG
65
A
PHE
67
A
PHE
67
A
TRP
81
A
TRP
81
A
SER
83
A
SER
83
A
TYR
94
A
TYR
94
A
PHE
96
A
PHE
96
A
PHE
120
A
PHE
120
A
TYR
122
A
TYR
122
A
HIS
125
A
HIS
125
A
TYR
127
A
TYR
127
A
TRP
141
A
TRP
141
A
GLY
143
A
GLY
143
A
PHE
154
A
PHE
154
A
PHE
156
A
PHE
156
1
P 1