1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lamosa, P.
Brennan, L.
Vis, H.
Turner, D.L.
Santos, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DE
Extremophiles
1431-0651
5
303
311
11699644
NMR structure of Desulfovibrio gigas rubredoxin: a model for studying protein stabilization by compatible solutes.
2001
US
Appl.Environ.Microbiol.
AEMIDF
2106
0099-2240
66
1974
10.1128/AEM.66.5.1974-1979.2000
10788369
Thermostabilization of Proteins by Diglycerol Phosphate, a New Compatible Solute from the Hyperthermophile Archaeoglobus Fulgidus
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
IRON-SULFUR-PROTEIN, ZINC SUBSTITUTED
5682.304
RUBREDOXIN
1
man
polymer
no
no
MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ
MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
CYTOPLASM
879
DESULFOVIBRIO GIGAS
CYTOPLASM
RDDG
562
ESCHERICHIA COLI
JM109
PRPPL1
citation
pdbx_database_status
repository
Initial release
Database references
Derived calculations
Other
Structure summary
Version format compliance
Data collection
Database references
Other
1
0
2001-10-18
1
1
2013-01-30
1
2
2019-10-09
_citation.page_last
_citation.title
_pdbx_database_status.status_code_mr
PDBE
Y
PDBE
2000-09-21
REL
REL
LEAST RESTRAINT VIOLATION
500
20
2D-1H-NOESY 2D-1H-TOCSY 2D-1H-COSY
7.6
pH
308
K
TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING
1
D.L.TURNER,L.BRENNAN,H. MEYER,C.LOHAUS, C.SIETHOFF,H.S.COSTA,B.GONZALEZ,H.SANTOS, J.E.SUAREZ
refinement
INDYANA
structure solution
INDYANA
500
Bruker
DRX
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ILE
3
n
3
ILE
3
A
TYR
4
n
4
TYR
4
A
VAL
5
n
5
VAL
5
A
CYS
6
n
6
CYS
6
A
THR
7
n
7
THR
7
A
VAL
8
n
8
VAL
8
A
CYS
9
n
9
CYS
9
A
GLY
10
n
10
GLY
10
A
TYR
11
n
11
TYR
11
A
GLU
12
n
12
GLU
12
A
TYR
13
n
13
TYR
13
A
ASP
14
n
14
ASP
14
A
PRO
15
n
15
PRO
15
A
ALA
16
n
16
ALA
16
A
LYS
17
n
17
LYS
17
A
GLY
18
n
18
GLY
18
A
ASP
19
n
19
ASP
19
A
PRO
20
n
20
PRO
20
A
ASP
21
n
21
ASP
21
A
SER
22
n
22
SER
22
A
GLY
23
n
23
GLY
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
PRO
26
n
26
PRO
26
A
GLY
27
n
27
GLY
27
A
THR
28
n
28
THR
28
A
LYS
29
n
29
LYS
29
A
PHE
30
n
30
PHE
30
A
GLU
31
n
31
GLU
31
A
ASP
32
n
32
ASP
32
A
LEU
33
n
33
LEU
33
A
PRO
34
n
34
PRO
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
TRP
37
n
37
TRP
37
A
ALA
38
n
38
ALA
38
A
CYS
39
n
39
CYS
39
A
PRO
40
n
40
PRO
40
A
VAL
41
n
41
VAL
41
A
CYS
42
n
42
CYS
42
A
GLY
43
n
43
GLY
43
A
ALA
44
n
44
ALA
44
A
SER
45
n
45
SER
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
ALA
48
n
48
ALA
48
A
PHE
49
n
49
PHE
49
A
GLU
50
n
50
GLU
50
A
LYS
51
n
51
LYS
51
A
GLN
52
n
52
GLN
52
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
5
A
N
VAL
5
A
O
GLU
50
A
O
GLU
50
1
A
A
O
H
TYR
TYR
4
13
1.52
2
A
A
O
HG1
LYS
THR
25
28
1.50
3
A
A
O
HG1
LYS
THR
25
28
1.47
3
A
A
H
O
CYS
ALA
39
44
1.59
4
A
A
O
HG1
LYS
THR
25
28
1.50
5
A
A
O
HG1
LYS
THR
25
28
1.50
6
A
A
O
H
ASP
GLY
14
18
1.50
7
A
A
O
HG1
LYS
THR
25
28
1.47
8
A
A
O
HG1
LYS
THR
25
28
1.58
9
A
A
O
HG1
LYS
THR
25
28
1.54
10
A
A
O
HG1
LYS
THR
25
28
1.51
10
A
A
O
H
ASP
GLY
14
18
1.51
11
A
A
HG22
OXT
VAL
GLN
5
52
1.40
11
A
A
O
HG1
LYS
THR
25
28
1.51
12
A
A
O
HG1
LYS
THR
25
28
1.53
12
A
A
O
H
TYR
TYR
4
13
1.59
13
A
A
O
HG1
LYS
THR
25
28
1.56
13
A
A
OE1
OXT
GLU
GLN
50
52
1.88
14
A
A
O
H
ASP
GLY
14
18
1.54
15
A
A
O
H
ASP
GLY
14
18
1.52
15
A
A
O
HG1
LYS
THR
25
28
1.54
15
A
A
O
H
TYR
TYR
4
13
1.59
16
A
A
O
HG1
LYS
THR
25
28
1.51
16
A
A
O
H
TYR
TYR
4
13
1.57
16
A
A
CG1
OXT
VAL
GLN
5
52
2.16
17
A
A
O
H
ASP
LYS
14
17
1.53
18
A
A
O
HG1
LYS
THR
25
28
1.54
19
A
A
O
H
TYR
TYR
4
13
1.58
20
A
A
O
HG1
LYS
THR
25
28
1.57
20
A
A
H
O
CYS
ALA
39
44
1.59
1
A
ASP
2
173.38
45.71
1
A
ASP
14
50.22
99.85
1
A
SER
22
159.87
-26.88
1
A
PRO
34
-42.31
165.54
1
A
ASP
36
-144.87
18.21
1
A
CYS
39
-42.20
100.31
1
A
ALA
44
-24.68
133.05
1
A
SER
45
-57.75
-175.41
1
A
LYS
46
-90.53
38.65
1
A
LYS
51
-42.62
100.71
2
A
CYS
9
-120.20
-68.40
2
A
ASP
21
-133.62
-74.52
2
A
PRO
34
-42.30
165.27
2
A
ASP
36
-148.80
20.68
2
A
CYS
39
-42.98
100.68
2
A
ALA
44
-26.11
135.13
2
A
SER
45
-60.28
-171.57
2
A
LYS
46
-91.08
36.00
2
A
PHE
49
-36.07
149.46
2
A
LYS
51
-44.63
98.20
3
A
ASP
2
-171.88
96.60
3
A
CYS
9
-120.17
-67.81
3
A
TYR
11
35.29
-151.26
3
A
GLU
12
163.58
82.92
3
A
PRO
20
-60.73
-164.11
3
A
ASP
21
81.62
33.59
3
A
SER
22
69.82
95.39
3
A
PRO
34
-41.11
163.38
3
A
ASP
36
-151.70
22.07
3
A
CYS
39
-43.32
100.81
3
A
ALA
44
-23.55
131.57
3
A
SER
45
-58.67
-170.89
3
A
LYS
46
-92.28
30.92
3
A
PHE
49
-36.53
149.62
3
A
LYS
51
-40.20
98.20
4
A
ASP
2
-172.64
135.74
4
A
CYS
9
-120.32
-68.91
4
A
TYR
11
34.68
-150.18
4
A
GLU
12
163.08
80.25
4
A
ASP
21
179.26
60.92
4
A
SER
22
39.57
52.55
4
A
PRO
34
-31.87
-70.82
4
A
ASP
35
151.80
-49.39
4
A
CYS
39
-44.43
101.34
4
A
ALA
44
-21.64
128.79
4
A
SER
45
-53.78
-171.76
4
A
LYS
46
-92.83
30.34
4
A
PHE
49
-35.78
149.81
4
A
LYS
51
-40.51
98.30
5
A
ASP
2
165.05
-72.99
5
A
CYS
9
-120.93
-68.51
5
A
ASP
19
-155.99
75.05
5
A
ASP
21
179.22
-56.81
5
A
PRO
34
-43.36
167.01
5
A
ASP
36
-145.87
18.95
5
A
CYS
39
-42.67
100.52
5
A
ALA
44
-26.79
136.51
5
A
SER
45
-54.43
-170.95
5
A
LYS
51
-40.38
105.08
6
A
TYR
11
35.33
-151.30
6
A
GLU
12
163.39
79.97
6
A
SER
22
76.28
-56.43
6
A
PRO
34
-33.49
-70.13
6
A
ASP
35
150.70
-47.17
6
A
CYS
39
-44.30
101.38
6
A
ALA
44
-21.12
128.74
6
A
SER
45
-52.51
-174.06
6
A
LYS
46
-92.34
30.55
6
A
LYS
51
-47.03
99.15
7
A
ASP
2
-172.84
81.57
7
A
GLU
12
-56.52
109.49
7
A
ASP
19
-150.29
64.21
7
A
PRO
20
-56.51
-162.00
7
A
SER
22
62.27
101.49
7
A
PRO
34
-43.60
165.58
7
A
ASP
36
-144.25
17.67
7
A
CYS
39
-43.62
100.86
7
A
ALA
44
-25.56
134.70
7
A
SER
45
-60.40
-173.35
7
A
LYS
46
-90.54
38.34
7
A
LYS
51
-47.76
108.69
8
A
ASP
2
-103.16
64.52
8
A
CYS
9
-126.28
-65.47
8
A
TYR
11
34.97
-150.79
8
A
GLU
12
169.19
89.13
8
A
ASP
19
-156.90
73.97
8
A
SER
22
-164.21
29.42
8
A
ASP
35
153.65
-47.40
8
A
ALA
48
-39.26
-84.36
8
A
PHE
49
-33.93
131.18
8
A
LYS
51
61.23
147.70
9
A
ASP
2
-171.89
69.05
9
A
CYS
9
-123.65
-65.20
9
A
ASP
19
-161.12
87.31
9
A
ASP
21
-115.95
62.54
9
A
SER
22
174.48
-36.57
9
A
ASP
35
153.75
-46.57
9
A
ASP
47
-85.64
47.01
9
A
LYS
51
-43.62
101.06
10
A
ASP
2
171.79
110.43
10
A
CYS
9
-120.32
-68.01
10
A
TYR
11
33.87
-148.08
10
A
GLU
12
159.61
84.10
10
A
SER
22
60.62
70.45
10
A
PRO
34
-42.07
165.29
10
A
ASP
36
-148.70
20.37
10
A
CYS
39
-43.68
100.92
10
A
ALA
44
-23.05
131.16
10
A
SER
45
-56.91
-171.52
10
A
PHE
49
-36.24
149.06
10
A
LYS
51
-40.25
99.60
11
A
TYR
11
37.02
-155.28
11
A
GLU
12
169.59
87.14
11
A
PRO
20
-89.13
43.23
11
A
ASP
21
-165.38
52.21
11
A
SER
22
-177.88
-53.15
11
A
PRO
34
-41.78
164.64
11
A
ASP
36
-145.70
18.35
11
A
CYS
39
-43.78
101.02
11
A
ALA
44
-25.28
135.64
11
A
SER
45
-60.88
-172.10
11
A
LYS
46
-91.85
31.02
11
A
LYS
51
-40.23
102.11
12
A
ASP
2
-178.25
79.20
12
A
ASP
19
-161.49
80.04
12
A
SER
22
84.34
-56.23
12
A
PRO
34
-43.47
167.22
12
A
ASP
36
-145.90
19.02
12
A
CYS
39
-43.18
100.99
12
A
ALA
44
-26.77
136.23
12
A
SER
45
-54.98
-169.48
12
A
LYS
51
-38.50
98.51
13
A
ASP
2
40.33
86.27
13
A
CYS
9
-125.65
-68.06
13
A
ASP
19
-155.95
87.33
13
A
ASP
21
-141.44
-51.66
13
A
PRO
34
-41.64
164.39
13
A
ASP
36
-152.15
22.96
13
A
ASP
47
-84.57
48.72
13
A
ALA
48
-131.34
-45.57
13
A
LYS
51
-39.94
104.37
14
A
TYR
11
33.36
-147.18
14
A
GLU
12
160.04
79.44
14
A
ASP
19
-162.07
82.41
14
A
PRO
20
-76.13
-163.84
14
A
SER
22
81.68
91.69
14
A
PRO
34
-47.70
-18.73
14
A
ASP
35
87.74
-45.98
14
A
CYS
39
-45.62
102.09
14
A
ALA
44
-23.25
131.84
14
A
SER
45
-53.53
-171.22
14
A
LYS
51
-39.96
102.90
15
A
ASP
2
-175.70
65.63
15
A
ASP
19
-158.23
78.70
15
A
ASP
21
177.98
57.83
15
A
SER
22
165.22
-58.14
15
A
PRO
34
-43.22
166.69
15
A
ASP
36
-145.99
19.01
15
A
CYS
39
-43.07
100.73
15
A
ALA
44
-27.26
136.69
15
A
SER
45
-55.97
-168.41
15
A
LYS
51
-40.04
100.24
16
A
ASP
2
57.06
95.62
16
A
SER
22
159.82
-27.54
16
A
PRO
34
-44.29
165.71
16
A
ASP
36
-143.82
17.66
16
A
CYS
39
-44.27
101.55
16
A
ALA
44
-26.21
135.87
16
A
SER
45
-53.86
-170.60
16
A
LYS
51
-39.91
103.02
17
A
CYS
9
-126.38
-68.61
17
A
TYR
11
33.74
-146.81
17
A
GLU
12
164.17
84.23
17
A
ASP
21
45.97
75.51
17
A
SER
22
175.30
-35.11
17
A
ASP
35
85.00
-50.29
17
A
VAL
41
-84.01
-70.51
17
A
ASP
47
-86.50
44.82
17
A
LYS
51
-39.75
106.77
18
A
ASP
19
-163.55
75.13
18
A
ASP
21
74.96
-69.58
18
A
SER
22
-52.09
-72.56
18
A
PRO
34
-42.46
165.45
18
A
ASP
36
-148.81
20.43
18
A
CYS
39
-42.99
100.78
18
A
ALA
44
-26.13
135.22
18
A
SER
45
-54.13
-170.19
18
A
LYS
51
-40.22
102.94
19
A
GLU
12
-56.40
104.03
19
A
ASP
19
-157.88
83.44
19
A
ASP
21
-131.82
-53.41
19
A
ASP
36
156.50
-25.18
19
A
CYS
39
-44.64
101.59
19
A
ALA
44
-27.22
137.24
19
A
SER
45
-62.77
-171.71
19
A
LYS
46
-90.87
35.48
19
A
PHE
49
-35.73
149.18
19
A
LYS
51
-40.33
98.44
20
A
ASP
2
-159.47
83.45
20
A
CYS
9
-120.27
-68.84
20
A
TYR
11
34.63
-150.30
20
A
GLU
12
162.56
78.32
20
A
PRO
34
-32.60
-70.66
20
A
ASP
35
151.97
-49.24
20
A
CYS
39
-44.89
101.67
20
A
ALA
44
-20.58
127.41
20
A
SER
45
-55.10
-172.47
20
A
LYS
46
-92.40
34.23
20
A
PHE
49
-35.24
149.49
20
A
LYS
51
-40.44
98.19
RUBREDOXIN
SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS ZINC RUBREDOXIN, NMR, 20 STRUCTURES
1
N
N
ELECTRON TRANSPORT
ELECTRON TRANSPORT, ZINC-SUBSTITUTION, THERMOSTABILITY
RUBR_DESGI
UNP
1
P00270
1
52
1E8J
1
52
P00270
A
1
1
52
2
anti-parallel
A
TYR
4
A
TYR
4
A
VAL
5
A
VAL
5
A
GLU
50
A
GLU
50
A
LYS
51
A
LYS
51
1
P 1