0.009980 0.000000 0.000000 0.000000 0.009980 0.000000 0.000000 0.000000 0.020325 0.00000 0.00000 0.00000 Ostermann, N. Lavie, A. Padiyar, S. Brundiers, R. Veit, T. Reinstein, J. Goody, R.S. Konrad, M. Schlichting, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 100.200 100.200 49.200 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C10 H15 N2 O8 P 322.208 THYMIDINE-5'-PHOSPHATE non-polymer C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 304 43 10.1006/JMBI.2000.4175 11071809 Potentiating Azt Activation: Structures of Wildtype and Mutant Human Thymidylate Kinase Suggest Reasons for the Mutants' Improved Kinetics with the HIV Prodrug Metabolite Aztmp 2000 UK Structure STRUE6 2005 0969-2126 8 629 10.1016/S0969-2126(00)00149-0 10873853 Insights Into the Phosphoryltransfer Mechanism of Human Thymidylate Kinase Gained from Crystal Structures of Enzyme Complexes Along the Reaction Coordinate. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 YES SINGLE WAVELENGTH M x-ray 1 0.8443 1.0 BW7B EMBL/DESY, HAMBURG 0.8443 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 24223.729 THYMIDYLATE KINASE 2.7.4.9 YES 1 man polymer 322.208 THYMIDINE-5'-PHOSPHATE 1 syn non-polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 162 nat water DTMP KINASE no no GSHMAARRGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGRARGELERYENGA FQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGELWK GSHMAARRGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGRARGELERYENGA FQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLGELWK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 4 147 9606 HOMO SAPIENS 562 ESCHERICHIA COLI sample 148 153 562 ESCHERICHIA COLI 562 ESCHERICHIA COLI sample 154 217 9606 HOMO SAPIENS 562 ESCHERICHIA COLI 1 2.55 51.75 VAPOR DIFFUSION 8.00 VAPOR DIFFUSION AT 293 K MIXING 2 MICROLITERS OF A SOLUTION CONTAINING THE ENZYME, NUCLEOTIDES, AND 50 MM MGCL2 WITH 2 MICROLITERS OF A SOLUTION CONTAINING 21% PEG 3350, 100 MM TRIS HCL PH 8.0 AND 50 MICROLITERS OF DEAD SEA WATER. 293 database_PDB_rev database_PDB_rev_record exptl_crystal_grow diffrn_source repository Initial release Data collection Experimental preparation Data collection 1 0 2001-10-11 1 1 2019-03-06 1 2 2019-07-24 _exptl_crystal_grow.method _exptl_crystal_grow.temp _diffrn_source.pdbx_synchrotron_site HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE,A MAGNESIUM-ION AND ALF3 HUMAN THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE, ADENOSINE DIPHOSPHATE AND A MAGNESIUM-ION HUMAN THYMIDYLATE KINASE COMPLEXED WITH ADP, TDP AND A MAGNESIUM-ION HUMAN THYMIDYLATE KINASE COMPLEXED WITH TP5A AND A MAGNESIUM-ION WILD TYPE HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND ADP HUMAN THYMIDYLATE KINASE COMPLEXED WITH THE BISUBSTRATE INHIBITOR AZTP5A HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND APPNP MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND APPNP MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH AZTMP AND ADP MUTANT HUMAN THYMIDYLATE KINASE (F105Y) COMPLEXED WITH DTMP AND ADP PDBE Y PDBE 2000-10-11 REL 1 A O HOH 2020 6.17 1 A O HOH 2066 5.92 TMP THYMIDINE-5'-PHOSPHATE ADP ADENOSINE-5'-DIPHOSPHATE MG MAGNESIUM ION HOH water CHAIN A - ENGINEERED MUTATION ARG200ALA, ARG16GLY CHAIN A - (GLY SER HIS) INSERTED AT THE N-TERMINUS CONVERSION OF DTMP TO DTDP ATP + THYMIDINE 5'-MONOPHOSPHATE = ADP + THYMIDINE 5'-DIPHOSPHATE. IN THIS MUTANT THE SO-CALLED LID REGION (RESIDUES A145-A148) HAS BEEN SUBSTITUTED WITH THE CORRESPONDING, SLIGHTLY LONGER SEQUENCE (RESIDUES 151-156 RARGEL) FROM THE E.COLI ENZYME. THESE RESIDUES ARE NOT VISIBLE IN THE ELECTRON DENSITY. THEREFORE, THE RESIDUES HAVE NOT BEEN RENUMBERED. SAMPLE COMTAINS SER183, ILE184, ASP190, AND A ILE191 (CONFIRMED BY THE DNA SEQUENCE AND ELECTRON DENSITY OF SIDE-CHAINS). POSSIBLE ERROR IN SWISSPROT ENTRY. TMP 301 2 TMP TMP 301 A ADP 302 3 ADP ADP 302 A MG 401 4 MG MG 401 A MG 402 4 MG MG 402 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2093 5 HOH HOH 2093 A HOH 2094 5 HOH HOH 2094 A HOH 2095 5 HOH HOH 2095 A HOH 2096 5 HOH HOH 2096 A HOH 2097 5 HOH HOH 2097 A HOH 2098 5 HOH HOH 2098 A HOH 2099 5 HOH HOH 2099 A HOH 2100 5 HOH HOH 2100 A HOH 2101 5 HOH HOH 2101 A HOH 2102 5 HOH HOH 2102 A HOH 2103 5 HOH HOH 2103 A HOH 2104 5 HOH HOH 2104 A HOH 2105 5 HOH HOH 2105 A HOH 2106 5 HOH HOH 2106 A HOH 2107 5 HOH HOH 2107 A HOH 2108 5 HOH HOH 2108 A HOH 2109 5 HOH HOH 2109 A HOH 2110 5 HOH HOH 2110 A HOH 2111 5 HOH HOH 2111 A HOH 2112 5 HOH HOH 2112 A HOH 2113 5 HOH HOH 2113 A HOH 2114 5 HOH HOH 2114 A HOH 2115 5 HOH HOH 2115 A HOH 2116 5 HOH HOH 2116 A HOH 2117 5 HOH HOH 2117 A HOH 2118 5 HOH HOH 2118 A HOH 2119 5 HOH HOH 2119 A HOH 2120 5 HOH HOH 2120 A HOH 2121 5 HOH HOH 2121 A HOH 2122 5 HOH HOH 2122 A HOH 2123 5 HOH HOH 2123 A HOH 2124 5 HOH HOH 2124 A HOH 2125 5 HOH HOH 2125 A HOH 2126 5 HOH HOH 2126 A HOH 2127 5 HOH HOH 2127 A HOH 2128 5 HOH HOH 2128 A HOH 2129 5 HOH HOH 2129 A HOH 2130 5 HOH HOH 2130 A HOH 2131 5 HOH HOH 2131 A HOH 2132 5 HOH HOH 2132 A HOH 2133 5 HOH HOH 2133 A HOH 2134 5 HOH HOH 2134 A HOH 2135 5 HOH HOH 2135 A HOH 2136 5 HOH HOH 2136 A HOH 2137 5 HOH HOH 2137 A HOH 2138 5 HOH HOH 2138 A HOH 2139 5 HOH HOH 2139 A HOH 2140 5 HOH HOH 2140 A HOH 2141 5 HOH HOH 2141 A HOH 2142 5 HOH HOH 2142 A HOH 2143 5 HOH HOH 2143 A HOH 2144 5 HOH HOH 2144 A HOH 2145 5 HOH HOH 2145 A HOH 2146 5 HOH HOH 2146 A HOH 2147 5 HOH HOH 2147 A HOH 2148 5 HOH HOH 2148 A HOH 2149 5 HOH HOH 2149 A HOH 2150 5 HOH HOH 2150 A HOH 2151 5 HOH HOH 2151 A HOH 2152 5 HOH HOH 2152 A HOH 2153 5 HOH HOH 2153 A HOH 2154 5 HOH HOH 2154 A HOH 2155 5 HOH HOH 2155 A HOH 2156 5 HOH HOH 2156 A HOH 2157 5 HOH HOH 2157 A HOH 2158 5 HOH HOH 2158 A HOH 2159 5 HOH HOH 2159 A HOH 2160 5 HOH HOH 2160 A HOH 2161 5 HOH HOH 2161 A HOH 2162 5 HOH HOH 2162 A n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A ARG 4 n 7 ARG 4 A ARG 5 n 8 ARG 5 A GLY 6 n 9 GLY 6 A ALA 7 n 10 ALA 7 A LEU 8 n 11 LEU 8 A ILE 9 n 12 ILE 9 A VAL 10 n 13 VAL 10 A LEU 11 n 14 LEU 11 A GLU 12 n 15 GLU 12 A GLY 13 n 16 GLY 13 A VAL 14 n 17 VAL 14 A ASP 15 n 18 ASP 15 A GLY 16 n 19 GLY 16 A ALA 17 n 20 ALA 17 A GLY 18 n 21 GLY 18 A LYS 19 n 22 LYS 19 A SER 20 n 23 SER 20 A THR 21 n 24 THR 21 A GLN 22 n 25 GLN 22 A SER 23 n 26 SER 23 A ARG 24 n 27 ARG 24 A LYS 25 n 28 LYS 25 A LEU 26 n 29 LEU 26 A VAL 27 n 30 VAL 27 A GLU 28 n 31 GLU 28 A ALA 29 n 32 ALA 29 A LEU 30 n 33 LEU 30 A CYS 31 n 34 CYS 31 A ALA 32 n 35 ALA 32 A ALA 33 n 36 ALA 33 A GLY 34 n 37 GLY 34 A HIS 35 n 38 HIS 35 A ARG 36 n 39 ARG 36 A ALA 37 n 40 ALA 37 A GLU 38 n 41 GLU 38 A LEU 39 n 42 LEU 39 A LEU 40 n 43 LEU 40 A ARG 41 n 44 ARG 41 A PHE 42 n 45 PHE 42 A PRO 43 n 46 PRO 43 A GLU 44 n 47 GLU 44 A ARG 45 n 48 ARG 45 A SER 46 n 49 SER 46 A THR 47 n 50 THR 47 A GLU 48 n 51 GLU 48 A ILE 49 n 52 ILE 49 A GLY 50 n 53 GLY 50 A LYS 51 n 54 LYS 51 A LEU 52 n 55 LEU 52 A LEU 53 n 56 LEU 53 A SER 54 n 57 SER 54 A SER 55 n 58 SER 55 A TYR 56 n 59 TYR 56 A LEU 57 n 60 LEU 57 A GLN 58 n 61 GLN 58 A LYS 59 n 62 LYS 59 A LYS 60 n 63 LYS 60 A SER 61 n 64 SER 61 A ASP 62 n 65 ASP 62 A VAL 63 n 66 VAL 63 A GLU 64 n 67 GLU 64 A ASP 65 n 68 ASP 65 A HIS 66 n 69 HIS 66 A SER 67 n 70 SER 67 A VAL 68 n 71 VAL 68 A HIS 69 n 72 HIS 69 A LEU 70 n 73 LEU 70 A LEU 71 n 74 LEU 71 A PHE 72 n 75 PHE 72 A SER 73 n 76 SER 73 A ALA 74 n 77 ALA 74 A ASN 75 n 78 ASN 75 A ARG 76 n 79 ARG 76 A TRP 77 n 80 TRP 77 A GLU 78 n 81 GLU 78 A GLN 79 n 82 GLN 79 A VAL 80 n 83 VAL 80 A PRO 81 n 84 PRO 81 A LEU 82 n 85 LEU 82 A ILE 83 n 86 ILE 83 A LYS 84 n 87 LYS 84 A GLU 85 n 88 GLU 85 A LYS 86 n 89 LYS 86 A LEU 87 n 90 LEU 87 A SER 88 n 91 SER 88 A GLN 89 n 92 GLN 89 A GLY 90 n 93 GLY 90 A VAL 91 n 94 VAL 91 A THR 92 n 95 THR 92 A LEU 93 n 96 LEU 93 A VAL 94 n 97 VAL 94 A VAL 95 n 98 VAL 95 A ASP 96 n 99 ASP 96 A ARG 97 n 100 ARG 97 A TYR 98 n 101 TYR 98 A ALA 99 n 102 ALA 99 A PHE 100 n 103 PHE 100 A SER 101 n 104 SER 101 A GLY 102 n 105 GLY 102 A VAL 103 n 106 VAL 103 A ALA 104 n 107 ALA 104 A PHE 105 n 108 PHE 105 A THR 106 n 109 THR 106 A GLY 107 n 110 GLY 107 A ALA 108 n 111 ALA 108 A LYS 109 n 112 LYS 109 A GLU 110 n 113 GLU 110 A ASN 111 n 114 ASN 111 A PHE 112 n 115 PHE 112 A SER 113 n 116 SER 113 A LEU 114 n 117 LEU 114 A ASP 115 n 118 ASP 115 A TRP 116 n 119 TRP 116 A CYS 117 n 120 CYS 117 A LYS 118 n 121 LYS 118 A GLN 119 n 122 GLN 119 A PRO 120 n 123 PRO 120 A ASP 121 n 124 ASP 121 A VAL 122 n 125 VAL 122 A GLY 123 n 126 GLY 123 A LEU 124 n 127 LEU 124 A PRO 125 n 128 PRO 125 A LYS 126 n 129 LYS 126 A PRO 127 n 130 PRO 127 A ASP 128 n 131 ASP 128 A LEU 129 n 132 LEU 129 A VAL 130 n 133 VAL 130 A LEU 131 n 134 LEU 131 A PHE 132 n 135 PHE 132 A LEU 133 n 136 LEU 133 A GLN 134 n 137 GLN 134 A LEU 135 n 138 LEU 135 A GLN 136 n 139 GLN 136 A LEU 137 n 140 LEU 137 A ALA 138 n 141 ALA 138 A ASP 139 n 142 ASP 139 A ALA 140 n 143 ALA 140 A ALA 141 n 144 ALA 141 A LYS 142 n 145 LYS 142 A ARG 143 n 146 ARG 143 A n 147 144 A n 148 145 A n 149 146 A n 150 147 A n 151 148 A n 152 A 148 A n 153 B 148 A n 154 149 A n 155 150 A TYR 151 n 156 TYR 151 A GLU 152 n 157 GLU 152 A ASN 153 n 158 ASN 153 A GLY 154 n 159 GLY 154 A ALA 155 n 160 ALA 155 A PHE 156 n 161 PHE 156 A GLN 157 n 162 GLN 157 A GLU 158 n 163 GLU 158 A ARG 159 n 164 ARG 159 A ALA 160 n 165 ALA 160 A LEU 161 n 166 LEU 161 A ARG 162 n 167 ARG 162 A CYS 163 n 168 CYS 163 A PHE 164 n 169 PHE 164 A HIS 165 n 170 HIS 165 A GLN 166 n 171 GLN 166 A LEU 167 n 172 LEU 167 A MET 168 n 173 MET 168 A LYS 169 n 174 LYS 169 A ASP 170 n 175 ASP 170 A THR 171 n 176 THR 171 A THR 172 n 177 THR 172 A LEU 173 n 178 LEU 173 A ASN 174 n 179 ASN 174 A TRP 175 n 180 TRP 175 A LYS 176 n 181 LYS 176 A MET 177 n 182 MET 177 A VAL 178 n 183 VAL 178 A ASP 179 n 184 ASP 179 A ALA 180 n 185 ALA 180 A SER 181 n 186 SER 181 A LYS 182 n 187 LYS 182 A SER 183 n 188 SER 183 A ILE 184 n 189 ILE 184 A GLU 185 n 190 GLU 185 A ALA 186 n 191 ALA 186 A VAL 187 n 192 VAL 187 A HIS 188 n 193 HIS 188 A GLU 189 n 194 GLU 189 A ASP 190 n 195 ASP 190 A ILE 191 n 196 ILE 191 A ARG 192 n 197 ARG 192 A VAL 193 n 198 VAL 193 A LEU 194 n 199 LEU 194 A SER 195 n 200 SER 195 A GLU 196 n 201 GLU 196 A ASP 197 n 202 ASP 197 A ALA 198 n 203 ALA 198 A ILE 199 n 204 ILE 199 A ALA 200 n 205 ALA 200 A THR 201 n 206 THR 201 A ALA 202 n 207 ALA 202 A THR 203 n 208 THR 203 A GLU 204 n 209 GLU 204 A LYS 205 n 210 LYS 205 A PRO 206 n 211 PRO 206 A LEU 207 n 212 LEU 207 A GLY 208 n 213 GLY 208 A GLU 209 n 214 GLU 209 A LEU 210 n 215 LEU 210 A TRP 211 n 216 TRP 211 A LYS 212 n 217 LYS 212 A author_and_software_defined_assembly PQS 2 dimeric 1820 -18.9 21700 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 A HOH 2082 F O HOH 1_555 94.1 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 A HOH 2014 F O HOH 1_555 175.6 A HOH 2082 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2014 F O HOH 1_555 81.8 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 A HOH 2155 F O HOH 1_555 91.0 A HOH 2082 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2155 F O HOH 1_555 94.0 A HOH 2014 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2155 F O HOH 1_555 90.8 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 A HOH 2156 F O HOH 1_555 96.2 A HOH 2082 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2156 F O HOH 1_555 161.3 A HOH 2014 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2156 F O HOH 1_555 87.4 A HOH 2155 F O HOH 1_555 A MG 401 D MG MG 1_555 A HOH 2156 F O HOH 1_555 101.4 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 92.2 A HOH 2082 F O HOH 1_555 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 82.2 A HOH 2014 F O HOH 1_555 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 85.7 A HOH 2155 F O HOH 1_555 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 175.2 A HOH 2156 F O HOH 1_555 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 81.8 A HOH 2089 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 8_665 167.5 A HOH 2089 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2089 F O HOH 1_555 99.5 A HOH 2040 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2089 F O HOH 1_555 91.5 A HOH 2089 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 8_665 98.2 A HOH 2040 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 8_665 77.8 A HOH 2089 F O HOH 1_555 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 8_665 79.6 A HOH 2089 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 1_555 90.7 A HOH 2040 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 1_555 79.3 A HOH 2089 F O HOH 1_555 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 1_555 167.1 A HOH 2093 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 1_555 106.9 A HOH 2089 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 78.5 A HOH 2040 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 106.2 A HOH 2089 F O HOH 1_555 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 97.5 A HOH 2093 F O HOH 8_665 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 175.2 A HOH 2040 F O HOH 1_555 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 76.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 100.2000000000 100.2000000000 24.6000000000 A N GLU 38 A N GLU 41 A O THR 92 A O THR 95 A N VAL 95 A N VAL 98 A O ILE 9 A O ILE 12 A N VAL 10 A N VAL 13 A O LEU 129 A O LEU 132 A N PHE 132 A N PHE 135 A O LYS 176 A O LYS 181 1 A MG 402 E MG 1 A CG LYS 142 A CG LYS 145 1 Y 1 A CD LYS 142 A CD LYS 145 1 Y 1 A CE LYS 142 A CE LYS 145 1 Y 1 A NZ LYS 142 A NZ LYS 145 1 Y 1 A CG TYR 151 A CG TYR 156 1 Y 1 A CD1 TYR 151 A CD1 TYR 156 1 Y 1 A CD2 TYR 151 A CD2 TYR 156 1 Y 1 A CE1 TYR 151 A CE1 TYR 156 1 Y 1 A CE2 TYR 151 A CE2 TYR 156 1 Y 1 A CZ TYR 151 A CZ TYR 156 1 Y 1 A OH TYR 151 A OH TYR 156 1 Y 1 A CG GLU 152 A CG GLU 157 1 Y 1 A CD GLU 152 A CD GLU 157 1 Y 1 A OE1 GLU 152 A OE1 GLU 157 1 Y 1 A OE2 GLU 152 A OE2 GLU 157 1 Y 1 A O LYS 212 A O LYS 217 1 Y 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A ALA 2 A ALA 5 1 Y 1 A ALA 3 A ALA 6 1 Y 1 A GLY 144 A GLY 147 1 Y 1 A ARG 145 A ARG 148 1 Y 1 A ALA 146 A ALA 149 1 Y 1 A ARG 147 A ARG 150 1 Y 1 A GLY 148 A GLY 151 1 Y A 1 A GLU 148 A GLU 152 1 Y B 1 A LEU 148 A LEU 153 1 Y 1 A GLU 149 A GLU 154 1 Y 1 A ARG 150 A ARG 155 1 Y 1 A A CB O TYR HOH 151 2108 0.21 1 A A OE2 O GLU HOH 48 2045 0.88 1 A A CD O GLU HOH 48 2045 1.17 1 A A OG O SER HOH 61 2052 1.26 1 A A OE1 O GLU HOH 185 2128 1.37 1 A A CA O TYR HOH 151 2108 1.37 1 A A NH1 O ARG HOH 41 2035 1.38 1 A A NZ O LYS HOH 126 2098 1.44 1 A A CG O GLU HOH 48 2045 1.79 1 A A OE2 O GLU HOH 189 2131 2.13 1 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 24 24 24 N 1 5.34 0.50 120.30 125.64 A A A NE CZ NH1 ARG ARG ARG 36 36 36 N 1 18.44 1.40 123.60 142.04 A A A CD NE CZ ARG ARG ARG 41 41 41 N 1 5.20 0.50 120.30 125.50 A A A NE CZ NH1 ARG ARG ARG 41 41 41 N 1 4.79 0.50 120.30 125.09 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 24.34 1.40 123.60 147.94 A A A CD NE CZ ARG ARG ARG 97 97 97 N 1 -4.48 0.50 120.30 115.82 A A A NE CZ NH2 ARG ARG ARG 97 97 97 N 1 -4.97 0.60 121.00 116.03 A A A CB CG CD2 TYR TYR TYR 98 98 98 N 1 4.73 0.60 121.00 125.73 A A A CB CG CD1 TYR TYR TYR 98 98 98 N 1 -3.87 0.50 120.30 116.43 A A A NE CZ NH1 ARG ARG ARG 143 143 143 N 1 -4.09 0.50 120.30 116.21 A A A NE CZ NH1 ARG ARG ARG 159 159 159 N 1 -9.77 1.50 110.10 100.33 A A A CB CA C ALA ALA ALA 200 200 200 N 1 A ARG 97 82.81 140.41 1 A TYR 98 -145.18 -143.87 0.283 0.226 1.9 70 2019 19650 10.0 96.8 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 1.9 70 162 1789 50 0 1577 1.900 70.000 1E9F 19646 0.05400 1 17.0000 4.900 96.8 1.90 2.00 3.200 0.14400 1 4.30 97.3 refinement REFMAC 5 data reduction XDS data scaling XSCALE THYMIDYLATE KINASE (E.C.2.7.4.9) Mutant human thymidylate kinase complexed with TMP and ADP 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A GLY 18 A GLY 21 HELX_P A ALA 33 A ALA 36 1 1 16 A THR 47 A THR 50 HELX_P A GLN 58 A GLN 61 1 2 12 A GLU 64 A GLU 67 HELX_P A GLU 78 A GLU 81 1 3 15 A GLN 79 A GLN 82 HELX_P A GLN 89 A GLN 92 1 4 11 A TYR 98 A TYR 101 HELX_P A GLY 107 A GLY 110 1 5 10 A SER 113 A SER 116 HELX_P A GLN 119 A GLN 122 1 6 7 A PRO 120 A PRO 123 HELX_P A VAL 122 A VAL 125 5 7 3 A GLN 136 A GLN 139 HELX_P A ARG 143 A ARG 146 1 8 8 A ASN 153 A ASN 158 HELX_P A MET 168 A MET 173 1 9 16 A SER 183 A SER 188 HELX_P A THR 201 A THR 206 1 10 19 A ALA 202 A ALA 207 HELX_P A LYS 205 A LYS 210 5 11 4 metalc 2.022 A ADP 302 C O2B ADP 1_555 A MG 401 D MG MG 1_555 metalc 2.362 A MG 401 D MG MG 1_555 A HOH 2082 F O HOH 1_555 metalc 2.426 A MG 401 D MG MG 1_555 A HOH 2014 F O HOH 1_555 metalc 2.320 A MG 401 D MG MG 1_555 A HOH 2155 F O HOH 1_555 metalc 2.359 A MG 401 D MG MG 1_555 A HOH 2156 F O HOH 1_555 metalc 2.115 A MG 401 D MG MG 1_555 A SER 20 A OG SER 23 1_555 metalc 2.253 A MG 402 E MG MG 1_555 A HOH 2089 F O HOH 8_665 metalc 2.357 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 8_665 metalc 2.238 A MG 402 E MG MG 1_555 A HOH 2089 F O HOH 1_555 metalc 2.564 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 8_665 metalc 2.373 A MG 402 E MG MG 1_555 A HOH 2040 F O HOH 1_555 metalc 2.602 A MG 402 E MG MG 1_555 A HOH 2093 F O HOH 1_555 TRANSFERASE PHOSPHOTRANSFERASE, THYMIDYLATE KINASE, P-LOOP, TRANSFERASE A PHE 42 A PHE 45 1 A PRO 43 A PRO 46 -0.91 KTHY_HUMAN UNP 1 P23919 KTHY_ECOLI UNP 1 P37345 1 144 1E9F 1 144 P23919 A 1 4 147 151 156 1E9F 145 148 P37345 B A 2 148 153 149 212 1E9F 149 212 P23919 A 1 154 217 1 expression tag GLY -2 1E9F A P23919 UNP 1 1 expression tag SER -1 1E9F A P23919 UNP 2 1 expression tag HIS 0 1E9F A P23919 UNP 3 1 ARG engineered mutation ALA 200 1E9F A P23919 UNP 200 205 1 ARG engineered mutation GLY 16 1E9F A P23919 UNP 16 19 1 LEU conflict ILE 184 1E9F A P23919 UNP 184 189 1 LEU conflict ILE 191 1E9F A P23919 UNP 191 196 1 GLU conflict ASP 190 1E9F A P23919 UNP 190 195 1 ARG conflict SER 183 1E9F A P23919 UNP 183 188 5 parallel parallel parallel parallel A ALA 37 A ALA 40 A ARG 41 A ARG 44 A THR 92 A THR 95 A ASP 96 A ASP 99 A LEU 8 A LEU 11 A GLU 12 A GLU 15 A LEU 129 A LEU 132 A GLN 134 A GLN 137 A TRP 175 A TRP 180 A ASP 179 A ASP 184 BINDING SITE FOR RESIDUE MG A 401 Software 6 BINDING SITE FOR RESIDUE MG A 402 Software 6 BINDING SITE FOR RESIDUE TMP A 301 Software 13 BINDING SITE FOR RESIDUE ADP A 302 Software 20 A SER 20 A SER 23 6 1_555 A ADP 302 C ADP 6 1_555 A HOH 2014 F HOH 6 1_555 A HOH 2082 F HOH 6 1_555 A HOH 2155 F HOH 6 1_555 A HOH 2156 F HOH 6 1_555 A HOH 2040 F HOH 6 1_555 A HOH 2040 F HOH 6 8_665 A HOH 2089 F HOH 6 8_665 A HOH 2089 F HOH 6 1_555 A HOH 2093 F HOH 6 8_665 A HOH 2093 F HOH 6 1_555 A ASP 15 A ASP 18 13 1_555 A PHE 42 A PHE 45 13 1_555 A LEU 57 A LEU 60 13 1_555 A PHE 72 A PHE 75 13 1_555 A ARG 76 A ARG 79 13 1_555 A ARG 97 A ARG 100 13 1_555 A GLY 102 A GLY 105 13 1_555 A PHE 105 A PHE 108 13 1_555 A HOH 2037 F HOH 13 1_555 A HOH 2082 F HOH 13 1_555 A HOH 2153 F HOH 13 1_555 A HOH 2154 F HOH 13 1_555 A HOH 2155 F HOH 13 1_555 A GLY 16 A GLY 19 20 1_555 A ALA 17 A ALA 20 20 1_555 A GLY 18 A GLY 21 20 1_555 A LYS 19 A LYS 22 20 1_555 A SER 20 A SER 23 20 1_555 A THR 21 A THR 24 20 1_555 A ARG 143 A ARG 146 20 1_555 A LYS 182 A LYS 187 20 1_555 A SER 183 A SER 188 20 1_555 A ILE 184 A ILE 189 20 1_555 A ARG 192 A ARG 197 20 4_455 A MG 401 D MG 20 1_555 A HOH 2107 F HOH 20 1_555 A HOH 2155 F HOH 20 1_555 A HOH 2156 F HOH 20 1_555 A HOH 2157 F HOH 20 1_555 A HOH 2158 F HOH 20 1_555 A HOH 2160 F HOH 20 1_555 A HOH 2161 F HOH 20 1_555 A HOH 2162 F HOH 20 1_555 96 P 43 21 2