0.022055
0.000000
0.000000
0.000000
0.020396
0.000000
0.000000
0.000000
0.018212
0.00000
0.00000
0.00000
Sainz, G.
Armengaud, J.
Stojanoff, V.
Sanishvili, N.
Jouanneau, Y.
Larry, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
45.340
49.030
54.910
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe2 S2
175.820
FE2/S2 (INORGANIC) CLUSTER
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
301
10.1107/S0907444900017832
11173487
Crystallization and Preliminary X-Ray Diffraction Analysis of a [2Fe-2S] Ferredoxin (Fdvi) from Rhodobacter Capsulatus
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
CCD
1999-07-15
ANL-ECT
SI(111)
MAD
M
x-ray
1
1.741
1.0
1.9815
1.0
19-ID
APS
1.741,1.9815
SYNCHROTRON
APS BEAMLINE 19-ID
11415.027
FERREDOXIN VI
1
man
polymer
175.820
FE2/S2 (INORGANIC) CLUSTER
1
syn
non-polymer
18.015
water
57
nat
water
no
no
AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA
TSRLTCQIKVTSLLDGLVVHLPEKQI
AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA
TSRLTCQIKVTSLLDGLVVHLPEKQI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
B10
sample
FDXE
1061
RHODOBACTER CAPSULATUS
FDXE
469008
ESCHERICHIA COLI
BL21(DE3)
PAJ66
1
2.64
53
VAPOR DIFFUSION
7.60
7 M SODIUM FORMATE, IMIDAZOLE PH 7.6, 15 DEG SEEDING IN 3.5-4.2 SODIUM FORMATE.
288
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_biol
repository
Initial release
Version format compliance
Version format compliance
Data collection
Experimental preparation
Other
1
0
2001-04-09
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-15
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
PDBE
Y
PDBE
2000-10-24
REL
FES
FE2/S2 (INORGANIC) CLUSTER
HOH
water
FES
500
2
FES
FES
500
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
ALA
1
n
1
ALA
1
A
LYS
2
n
2
LYS
2
A
ILE
3
n
3
ILE
3
A
ILE
4
n
4
ILE
4
A
PHE
5
n
5
PHE
5
A
ILE
6
n
6
ILE
6
A
GLU
7
n
7
GLU
7
A
HIS
8
n
8
HIS
8
A
ASN
9
n
9
ASN
9
A
GLY
10
n
10
GLY
10
A
THR
11
n
11
THR
11
A
ARG
12
n
12
ARG
12
A
HIS
13
n
13
HIS
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
VAL
23
n
23
VAL
23
A
MET
24
n
24
MET
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
ALA
27
n
27
ALA
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
ASN
30
n
30
ASN
30
A
GLY
31
n
31
GLY
31
A
VAL
32
n
32
VAL
32
A
PRO
33
n
33
PRO
33
A
GLY
34
n
34
GLY
34
A
ILE
35
n
35
ILE
35
A
ASP
36
n
36
ASP
36
A
ALA
37
n
37
ALA
37
A
ASP
38
n
38
ASP
38
A
CYS
39
n
39
CYS
39
A
GLY
40
n
40
GLY
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
CYS
43
n
43
CYS
43
A
ALA
44
n
44
ALA
44
A
CYS
45
n
45
CYS
45
A
SER
46
n
46
SER
46
A
THR
47
n
47
THR
47
A
CYS
48
n
48
CYS
48
A
HIS
49
n
49
HIS
49
A
ALA
50
n
50
ALA
50
A
TYR
51
n
51
TYR
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
PRO
54
n
54
PRO
54
A
ALA
55
n
55
ALA
55
A
TRP
56
n
56
TRP
56
A
VAL
57
n
57
VAL
57
A
ASP
58
n
58
ASP
58
A
LYS
59
n
59
LYS
59
A
LEU
60
n
60
LEU
60
A
PRO
61
n
61
PRO
61
A
LYS
62
n
62
LYS
62
A
ALA
63
n
63
ALA
63
A
LEU
64
n
64
LEU
64
A
PRO
65
n
65
PRO
65
A
THR
66
n
66
THR
66
A
GLU
67
n
67
GLU
67
A
THR
68
n
68
THR
68
A
ASP
69
n
69
ASP
69
A
MET
70
n
70
MET
70
A
ILE
71
n
71
ILE
71
A
ASP
72
n
72
ASP
72
A
PHE
73
n
73
PHE
73
A
ALA
74
n
74
ALA
74
A
TYR
75
n
75
TYR
75
A
GLU
76
n
76
GLU
76
A
PRO
77
n
77
PRO
77
A
ASN
78
n
78
ASN
78
A
PRO
79
n
79
PRO
79
A
ALA
80
n
80
ALA
80
A
THR
81
n
81
THR
81
A
SER
82
n
82
SER
82
A
ARG
83
n
83
ARG
83
A
LEU
84
n
84
LEU
84
A
THR
85
n
85
THR
85
A
CYS
86
n
86
CYS
86
A
GLN
87
n
87
GLN
87
A
ILE
88
n
88
ILE
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
THR
91
n
91
THR
91
A
SER
92
n
92
SER
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
ASP
95
n
95
ASP
95
A
GLY
96
n
96
GLY
96
A
LEU
97
n
97
LEU
97
A
VAL
98
n
98
VAL
98
A
VAL
99
n
99
VAL
99
A
HIS
100
n
100
HIS
100
A
LEU
101
n
101
LEU
101
A
PRO
102
n
102
PRO
102
A
GLU
103
n
103
GLU
103
A
LYS
104
n
104
LYS
104
A
GLN
105
n
105
GLN
105
A
ILE
106
n
106
ILE
106
A
author_and_software_defined_assembly
PQS
1
monomeric
A
CYS
39
A
SG
CYS
39
1_555
A
FES
500
B
FE1
FES
1_555
A
FES
500
B
S1
FES
1_555
111.5
A
CYS
39
A
SG
CYS
39
1_555
A
FES
500
B
FE1
FES
1_555
A
FES
500
B
S2
FES
1_555
107.6
A
FES
500
B
S1
FES
1_555
A
FES
500
B
FE1
FES
1_555
A
FES
500
B
S2
FES
1_555
104.4
A
CYS
39
A
SG
CYS
39
1_555
A
FES
500
B
FE1
FES
1_555
A
CYS
45
A
SG
CYS
45
1_555
111.2
A
FES
500
B
S1
FES
1_555
A
FES
500
B
FE1
FES
1_555
A
CYS
45
A
SG
CYS
45
1_555
109.8
A
FES
500
B
S2
FES
1_555
A
FES
500
B
FE1
FES
1_555
A
CYS
45
A
SG
CYS
45
1_555
112.1
A
CYS
48
A
SG
CYS
48
1_555
A
FES
500
B
FE2
FES
1_555
A
FES
500
B
S1
FES
1_555
111.3
A
CYS
48
A
SG
CYS
48
1_555
A
FES
500
B
FE2
FES
1_555
A
FES
500
B
S2
FES
1_555
115.1
A
FES
500
B
S1
FES
1_555
A
FES
500
B
FE2
FES
1_555
A
FES
500
B
S2
FES
1_555
105.1
A
CYS
48
A
SG
CYS
48
1_555
A
FES
500
B
FE2
FES
1_555
A
CYS
86
A
SG
CYS
86
1_555
104.2
A
FES
500
B
S1
FES
1_555
A
FES
500
B
FE2
FES
1_555
A
CYS
86
A
SG
CYS
86
1_555
116.7
A
FES
500
B
S2
FES
1_555
A
FES
500
B
FE2
FES
1_555
A
CYS
86
A
SG
CYS
86
1_555
104.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
15
A
N
VAL
15
A
O
ILE
3
A
O
ILE
3
A
N
ILE
4
A
N
ILE
4
A
O
LEU
97
A
O
LEU
97
A
N
HIS
100
A
N
HIS
100
A
O
TYR
51
A
O
TYR
51
A
N
ALA
50
A
N
ALA
50
A
O
ARG
83
A
O
ARG
83
1
A
ALA
44
-142.58
20.49
1
A
CYS
45
-140.47
-22.38
PROTEIN_REP.PARAM
PROTEIN.TOP
CLUSTER150
CLUSTER150
WATER_REP.PARAM
WATER.TOP
ION.TOP
32.8
-7.57
0.00
0.00
-5.39
0.00
12.96
0.214
0.011
0.196
0.196
2.07
19.27
397
7653
5.2
97.4
RANDOM
939932.99
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
60
0.399341
0.27
0.23
5.00
0.20
0.13
2.07
19.27
57
858
4
0
797
0.005
1.3
25.1
0.73
1.45
1.50
2.24
2.00
2.26
2.00
3.46
2.50
0.259
0.032
0.213
2.20
65
1122
6
5.5
93.0
18.6
1.960
40.161
1E9M
16751
2.000
0.05300
1
24.9000
3.600
98.8
1.96
2.03
3.700
0.30000
1
3.00
93.7
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
FERREDOXIN VI
Ferredoxin VI from Rhodobacter Capsulatus
1
N
N
2
N
N
3
N
N
A
THR
22
A
THR
22
HELX_P
A
ASP
29
A
ASP
29
1
1
8
A
ASP
53
A
ASP
53
HELX_P
A
ASP
58
A
ASP
58
1
2
6
A
LEU
64
A
LEU
64
HELX_P
A
ASP
72
A
ASP
72
1
3
9
A
CYS
86
A
CYS
86
HELX_P
A
ILE
88
A
ILE
88
5
4
3
A
THR
91
A
THR
91
HELX_P
A
ASP
95
A
ASP
95
5
5
5
metalc
2.295
A
FES
500
B
FE1
FES
1_555
A
CYS
39
A
SG
CYS
39
1_555
metalc
2.273
A
FES
500
B
FE1
FES
1_555
A
CYS
45
A
SG
CYS
45
1_555
metalc
2.188
A
FES
500
B
FE2
FES
1_555
A
CYS
48
A
SG
CYS
48
1_555
metalc
2.348
A
FES
500
B
FE2
FES
1_555
A
CYS
86
A
SG
CYS
86
1_555
IRON-SULFUR PROTEIN
IRON-SULFUR PROTEIN, FERREDOXIN, [2FE-2S], BACTERIUM, ELECTRON TRANSPORT
FER6_RHOCA
UNP
1
P80306
1
106
1E9M
1
106
P80306
A
1
1
106
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
ARG
12
A
ARG
12
A
GLU
16
A
GLU
16
A
LYS
2
A
LYS
2
A
ILE
6
A
ILE
6
A
LEU
97
A
LEU
97
A
HIS
100
A
HIS
100
A
HIS
49
A
HIS
49
A
VAL
52
A
VAL
52
A
SER
82
A
SER
82
A
LEU
84
A
LEU
84
BINDING SITE FOR RESIDUE FES A 500
Software
9
A
ALA
37
A
ALA
37
9
1_555
A
CYS
39
A
CYS
39
9
1_555
A
GLY
41
A
GLY
41
9
1_555
A
CYS
43
A
CYS
43
9
1_555
A
ALA
44
A
ALA
44
9
1_555
A
CYS
45
A
CYS
45
9
1_555
A
SER
46
A
SER
46
9
1_555
A
CYS
48
A
CYS
48
9
1_555
A
CYS
86
A
CYS
86
9
1_555
19
P 21 21 21