0.022055 0.000000 0.000000 0.000000 0.020396 0.000000 0.000000 0.000000 0.018212 0.00000 0.00000 0.00000 Sainz, G. Armengaud, J. Stojanoff, V. Sanishvili, N. Jouanneau, Y. Larry, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 45.340 49.030 54.910 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe2 S2 175.820 FE2/S2 (INORGANIC) CLUSTER non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 301 10.1107/S0907444900017832 11173487 Crystallization and Preliminary X-Ray Diffraction Analysis of a [2Fe-2S] Ferredoxin (Fdvi) from Rhodobacter Capsulatus 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRROR CCD 1999-07-15 ANL-ECT SI(111) MAD M x-ray 1 1.741 1.0 1.9815 1.0 19-ID APS 1.741,1.9815 SYNCHROTRON APS BEAMLINE 19-ID 11415.027 FERREDOXIN VI 1 man polymer 175.820 FE2/S2 (INORGANIC) CLUSTER 1 syn non-polymer 18.015 water 57 nat water no no AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA TSRLTCQIKVTSLLDGLVVHLPEKQI AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA TSRLTCQIKVTSLLDGLVVHLPEKQI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n B10 sample FDXE 1061 RHODOBACTER CAPSULATUS FDXE 469008 ESCHERICHIA COLI BL21(DE3) PAJ66 1 2.64 53 VAPOR DIFFUSION 7.60 7 M SODIUM FORMATE, IMIDAZOLE PH 7.6, 15 DEG SEEDING IN 3.5-4.2 SODIUM FORMATE. 288 exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_biol repository Initial release Version format compliance Version format compliance Data collection Experimental preparation Other 1 0 2001-04-09 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-15 _exptl_crystal_grow.method _exptl_crystal_grow.temp _pdbx_database_status.recvd_author_approval PDBE Y PDBE 2000-10-24 REL FES FE2/S2 (INORGANIC) CLUSTER HOH water FES 500 2 FES FES 500 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A ILE 3 n 3 ILE 3 A ILE 4 n 4 ILE 4 A PHE 5 n 5 PHE 5 A ILE 6 n 6 ILE 6 A GLU 7 n 7 GLU 7 A HIS 8 n 8 HIS 8 A ASN 9 n 9 ASN 9 A GLY 10 n 10 GLY 10 A THR 11 n 11 THR 11 A ARG 12 n 12 ARG 12 A HIS 13 n 13 HIS 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A GLU 16 n 16 GLU 16 A ALA 17 n 17 ALA 17 A LYS 18 n 18 LYS 18 A PRO 19 n 19 PRO 19 A GLY 20 n 20 GLY 20 A LEU 21 n 21 LEU 21 A THR 22 n 22 THR 22 A VAL 23 n 23 VAL 23 A MET 24 n 24 MET 24 A GLU 25 n 25 GLU 25 A ALA 26 n 26 ALA 26 A ALA 27 n 27 ALA 27 A ARG 28 n 28 ARG 28 A ASP 29 n 29 ASP 29 A ASN 30 n 30 ASN 30 A GLY 31 n 31 GLY 31 A VAL 32 n 32 VAL 32 A PRO 33 n 33 PRO 33 A GLY 34 n 34 GLY 34 A ILE 35 n 35 ILE 35 A ASP 36 n 36 ASP 36 A ALA 37 n 37 ALA 37 A ASP 38 n 38 ASP 38 A CYS 39 n 39 CYS 39 A GLY 40 n 40 GLY 40 A GLY 41 n 41 GLY 41 A ALA 42 n 42 ALA 42 A CYS 43 n 43 CYS 43 A ALA 44 n 44 ALA 44 A CYS 45 n 45 CYS 45 A SER 46 n 46 SER 46 A THR 47 n 47 THR 47 A CYS 48 n 48 CYS 48 A HIS 49 n 49 HIS 49 A ALA 50 n 50 ALA 50 A TYR 51 n 51 TYR 51 A VAL 52 n 52 VAL 52 A ASP 53 n 53 ASP 53 A PRO 54 n 54 PRO 54 A ALA 55 n 55 ALA 55 A TRP 56 n 56 TRP 56 A VAL 57 n 57 VAL 57 A ASP 58 n 58 ASP 58 A LYS 59 n 59 LYS 59 A LEU 60 n 60 LEU 60 A PRO 61 n 61 PRO 61 A LYS 62 n 62 LYS 62 A ALA 63 n 63 ALA 63 A LEU 64 n 64 LEU 64 A PRO 65 n 65 PRO 65 A THR 66 n 66 THR 66 A GLU 67 n 67 GLU 67 A THR 68 n 68 THR 68 A ASP 69 n 69 ASP 69 A MET 70 n 70 MET 70 A ILE 71 n 71 ILE 71 A ASP 72 n 72 ASP 72 A PHE 73 n 73 PHE 73 A ALA 74 n 74 ALA 74 A TYR 75 n 75 TYR 75 A GLU 76 n 76 GLU 76 A PRO 77 n 77 PRO 77 A ASN 78 n 78 ASN 78 A PRO 79 n 79 PRO 79 A ALA 80 n 80 ALA 80 A THR 81 n 81 THR 81 A SER 82 n 82 SER 82 A ARG 83 n 83 ARG 83 A LEU 84 n 84 LEU 84 A THR 85 n 85 THR 85 A CYS 86 n 86 CYS 86 A GLN 87 n 87 GLN 87 A ILE 88 n 88 ILE 88 A LYS 89 n 89 LYS 89 A VAL 90 n 90 VAL 90 A THR 91 n 91 THR 91 A SER 92 n 92 SER 92 A LEU 93 n 93 LEU 93 A LEU 94 n 94 LEU 94 A ASP 95 n 95 ASP 95 A GLY 96 n 96 GLY 96 A LEU 97 n 97 LEU 97 A VAL 98 n 98 VAL 98 A VAL 99 n 99 VAL 99 A HIS 100 n 100 HIS 100 A LEU 101 n 101 LEU 101 A PRO 102 n 102 PRO 102 A GLU 103 n 103 GLU 103 A LYS 104 n 104 LYS 104 A GLN 105 n 105 GLN 105 A ILE 106 n 106 ILE 106 A author_and_software_defined_assembly PQS 1 monomeric A CYS 39 A SG CYS 39 1_555 A FES 500 B FE1 FES 1_555 A FES 500 B S1 FES 1_555 111.5 A CYS 39 A SG CYS 39 1_555 A FES 500 B FE1 FES 1_555 A FES 500 B S2 FES 1_555 107.6 A FES 500 B S1 FES 1_555 A FES 500 B FE1 FES 1_555 A FES 500 B S2 FES 1_555 104.4 A CYS 39 A SG CYS 39 1_555 A FES 500 B FE1 FES 1_555 A CYS 45 A SG CYS 45 1_555 111.2 A FES 500 B S1 FES 1_555 A FES 500 B FE1 FES 1_555 A CYS 45 A SG CYS 45 1_555 109.8 A FES 500 B S2 FES 1_555 A FES 500 B FE1 FES 1_555 A CYS 45 A SG CYS 45 1_555 112.1 A CYS 48 A SG CYS 48 1_555 A FES 500 B FE2 FES 1_555 A FES 500 B S1 FES 1_555 111.3 A CYS 48 A SG CYS 48 1_555 A FES 500 B FE2 FES 1_555 A FES 500 B S2 FES 1_555 115.1 A FES 500 B S1 FES 1_555 A FES 500 B FE2 FES 1_555 A FES 500 B S2 FES 1_555 105.1 A CYS 48 A SG CYS 48 1_555 A FES 500 B FE2 FES 1_555 A CYS 86 A SG CYS 86 1_555 104.2 A FES 500 B S1 FES 1_555 A FES 500 B FE2 FES 1_555 A CYS 86 A SG CYS 86 1_555 116.7 A FES 500 B S2 FES 1_555 A FES 500 B FE2 FES 1_555 A CYS 86 A SG CYS 86 1_555 104.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 15 A N VAL 15 A O ILE 3 A O ILE 3 A N ILE 4 A N ILE 4 A O LEU 97 A O LEU 97 A N HIS 100 A N HIS 100 A O TYR 51 A O TYR 51 A N ALA 50 A N ALA 50 A O ARG 83 A O ARG 83 1 A ALA 44 -142.58 20.49 1 A CYS 45 -140.47 -22.38 PROTEIN_REP.PARAM PROTEIN.TOP CLUSTER150 CLUSTER150 WATER_REP.PARAM WATER.TOP ION.TOP 32.8 -7.57 0.00 0.00 -5.39 0.00 12.96 0.214 0.011 0.196 0.196 2.07 19.27 397 7653 5.2 97.4 RANDOM 939932.99 1 RESTRAINED THROUGHOUT 0.0 MAD FLAT MODEL 60 0.399341 0.27 0.23 5.00 0.20 0.13 2.07 19.27 57 858 4 0 797 0.005 1.3 25.1 0.73 1.45 1.50 2.24 2.00 2.26 2.00 3.46 2.50 0.259 0.032 0.213 2.20 65 1122 6 5.5 93.0 18.6 1.960 40.161 1E9M 16751 2.000 0.05300 1 24.9000 3.600 98.8 1.96 2.03 3.700 0.30000 1 3.00 93.7 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing SOLVE FERREDOXIN VI Ferredoxin VI from Rhodobacter Capsulatus 1 N N 2 N N 3 N N A THR 22 A THR 22 HELX_P A ASP 29 A ASP 29 1 1 8 A ASP 53 A ASP 53 HELX_P A ASP 58 A ASP 58 1 2 6 A LEU 64 A LEU 64 HELX_P A ASP 72 A ASP 72 1 3 9 A CYS 86 A CYS 86 HELX_P A ILE 88 A ILE 88 5 4 3 A THR 91 A THR 91 HELX_P A ASP 95 A ASP 95 5 5 5 metalc 2.295 A FES 500 B FE1 FES 1_555 A CYS 39 A SG CYS 39 1_555 metalc 2.273 A FES 500 B FE1 FES 1_555 A CYS 45 A SG CYS 45 1_555 metalc 2.188 A FES 500 B FE2 FES 1_555 A CYS 48 A SG CYS 48 1_555 metalc 2.348 A FES 500 B FE2 FES 1_555 A CYS 86 A SG CYS 86 1_555 IRON-SULFUR PROTEIN IRON-SULFUR PROTEIN, FERREDOXIN, [2FE-2S], BACTERIUM, ELECTRON TRANSPORT FER6_RHOCA UNP 1 P80306 1 106 1E9M 1 106 P80306 A 1 1 106 5 anti-parallel parallel anti-parallel anti-parallel A ARG 12 A ARG 12 A GLU 16 A GLU 16 A LYS 2 A LYS 2 A ILE 6 A ILE 6 A LEU 97 A LEU 97 A HIS 100 A HIS 100 A HIS 49 A HIS 49 A VAL 52 A VAL 52 A SER 82 A SER 82 A LEU 84 A LEU 84 BINDING SITE FOR RESIDUE FES A 500 Software 9 A ALA 37 A ALA 37 9 1_555 A CYS 39 A CYS 39 9 1_555 A GLY 41 A GLY 41 9 1_555 A CYS 43 A CYS 43 9 1_555 A ALA 44 A ALA 44 9 1_555 A CYS 45 A CYS 45 9 1_555 A SER 46 A SER 46 9 1_555 A CYS 48 A CYS 48 9 1_555 A CYS 86 A CYS 86 9 1_555 19 P 21 21 21