0.004686 0.000000 0.000000 0.000000 0.013151 0.000000 0.000000 0.000000 0.019794 0.00000 0.00000 0.00000 Gomis-Rueth, F.X. Costa, M. Sola, M. Acebo, P. Eritja, R. Espinosa, M. Solar, G.D. Coll, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 40 90.00 90.00 90.00 213.400 76.040 50.520 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N O N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 S C N 258 N C N 259 N C N 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N C N 303 N C N 304 N C N 305 N N N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N S N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N O N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 R C N 361 N O N 362 N C N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N C N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub N 382 N sing Y 383 N doub N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 310 403 10.1006/JMBI.2001.4760 11428897 Plasmid Transcriptional Repressor Copg Oligomerises to Render Helical Superstructures Unbound and in Complexes with Oligonucleotides 2001 UK Embo J. EMJODG 0897 0261-4189 17 7404 10.1093/EMBOJ/17.24.7404 9857196 The Structure of Plasmid-Encoded Transcriptional Repressor Copg Unliganded and Bound to its Operator 1998 NE FEBS Lett. FEBLAL 0165 0014-5793 425 161 10.1016/S0014-5793(98)00219-1 9541028 Overexpression, Purification, Crystallization and Preliminary X-Ray Diffraction Analysis of the Pmv158-Encoded Plasmid Transcriptional Repressor Protein Copg 1998 10.2210/pdb1ea4/pdb pdb_00001ea4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110.0 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0527 1.0 5.2R ELETTRA 1.0527 SYNCHROTRON ELETTRA BEAMLINE 5.2R 5124.092 TRANSCRIPTIONAL REPRESSOR COPG DNA-BINDING PROTEIN 10 man polymer 6680.344 DNA (5'-D(*TP*AP*AP*CP*CP*GP*TP*GP *CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*TP*C)-3') 22BP SSDNA - FIRST STRAND 3 syn polymer 6822.412 DNA(5'-D(*AP*GP*AP*TP*TP*GP*CP*AP*TP *TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*GP*TP*T)-3') 22BP SSDNA - SECOND STRAND 3 syn polymer 18.015 water 101 nat water REPA PROTEIN no no MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQEK MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQEK A,B,D,E,F,G,H,J,K,L polypeptide(L) no no (DT)(DA)(DA)(DC)(DC)(DG)(DT)(DG)(DC)(DA)(DC)(DT)(DC)(DA)(DA)(DT)(DG)(DC)(DA)(DA) (DT)(DC) TAACCGTGCACTCAATGCAATC U,W,Y polydeoxyribonucleotide no no (DA)(DG)(DA)(DT)(DT)(DG)(DC)(DA)(DT)(DT)(DG)(DA)(DG)(DT)(DG)(DC)(DA)(DC)(DG)(DG) (DT)(DT) AGATTGCATTGAGTGCACGGTT V,X,Z polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample PLASMID PMV158 1311 STREPTOCOCCUS AGALACTIAE 562 ESCHERICHIA COLI PLASMID PMV158 1 2.23 44.94 ONE COPG DIMER/ 9BP DSDNA MODEL WAS USED AS SEARCHING MODEL. 4.60 MPD, NACL, NAACO, pH 4.60 -7.761 1 19 U 204 V 220 -2.131 U_DC204:DG220_V 1 10.592 -0.276 -0.214 -0.269 -21.349 1 19 U 205 V 219 -0.721 U_DC205:DG219_V 2 -1.438 -0.165 -0.258 0.011 -8.363 U 206 V 218 4.980 U_DG206:DC218_V 3 1.304 0.068 0.653 0.838 2.897 1 20 U 207 V 217 7.906 U_DT207:DA217_V 4 19.711 0.353 -0.135 0.374 -2.007 1 19 U 208 V 216 5.016 U_DG208:DC216_V 5 -9.703 0.638 -0.271 0.156 5.372 1 19 U 209 V 215 6.797 U_DC209:DG215_V 6 -6.276 1.337 -0.416 0.256 8.755 1 20 U 210 V 214 -12.960 U_DA210:DT214_V 7 -1.567 -0.016 -0.778 -0.226 2.032 1 U 211 V 213 11.612 U_DC211:DG213_V 8 12.350 -0.576 0.046 0.760 18.000 U 212 V 212 7.744 U_DT212:DA212_V 9 -7.954 0.331 -0.131 0.617 14.271 1 19 U 213 V 211 4.566 U_DC213:DG211_V 10 -23.093 -0.413 -0.122 0.297 -12.952 1 20 U 214 V 210 -3.590 U_DA214:DT210_V 11 -4.252 -0.152 0.130 0.135 -3.375 1 20 U 215 V 209 2.670 U_DA215:DT209_V 12 4.135 0.278 -0.115 0.336 12.025 1 20 U 216 V 208 0.581 U_DT216:DA208_V 13 6.029 0.026 -0.737 0.247 -6.135 1 19 U 217 V 207 1.645 U_DG217:DC207_V 14 -7.809 -0.290 -0.776 0.492 6.418 1 19 U 218 V 206 3.459 U_DC218:DG206_V 15 -3.383 -0.921 -0.378 0.343 27.958 1 20 U 219 V 205 6.603 U_DA219:DT205_V 16 1.363 0.035 0.063 0.162 15.233 1 20 U 220 V 204 -10.007 U_DA220:DT204_V 17 -8.364 1.443 1.644 -0.221 13.463 1 20 W 203 X 221 -2.495 W_DA203:DT221_X 18 1.326 0.259 0.523 0.081 22.463 1 19 W 204 X 220 -1.237 W_DC204:DG220_X 19 -8.921 -0.061 -0.738 -0.062 -10.658 1 19 W 205 X 219 2.884 W_DC205:DG219_X 20 -1.978 0.038 -0.373 0.137 -0.654 1 19 W 206 X 218 -5.034 W_DG206:DC218_X 21 -4.245 0.017 0.813 0.071 -0.231 1 20 W 207 X 217 0.733 W_DT207:DA217_X 22 7.413 -0.089 0.939 -0.168 12.547 1 19 W 208 X 216 2.627 W_DG208:DC216_X 23 9.106 0.023 0.320 0.152 -9.137 1 19 W 209 X 215 -2.266 W_DC209:DG215_X 24 9.241 0.088 0.542 0.056 -13.378 1 20 W 210 X 214 -5.195 W_DA210:DT214_X 25 2.137 0.030 -0.741 0.073 12.716 1 19 W 211 X 213 1.683 W_DC211:DG213_X 26 -0.107 0.064 -0.412 0.275 17.356 1 20 W 212 X 212 0.047 W_DT212:DA212_X 27 -3.141 0.010 0.043 0.015 12.530 1 19 W 213 X 211 2.478 W_DC213:DG211_X 28 -15.893 0.090 -0.613 0.011 -14.466 1 20 W 214 X 210 -0.388 W_DA214:DT210_X 29 -12.388 0.194 -0.279 0.115 -4.275 1 20 W 215 X 209 -0.332 W_DA215:DT209_X 30 6.670 0.223 0.122 0.051 11.349 1 20 W 216 X 208 -2.951 W_DT216:DA208_X 31 -5.270 -0.033 -0.969 0.079 -0.499 1 19 W 217 X 207 -1.013 W_DG217:DC207_X 32 -5.444 0.043 -0.206 0.107 -2.514 1 19 W 218 X 206 0.045 W_DC218:DG206_X 33 2.844 0.004 0.508 -0.136 -11.768 1 20 W 219 X 205 4.631 W_DA219:DT205_X 34 14.032 -0.041 -0.118 -0.174 1.448 1 20 W 220 X 204 -9.357 W_DA220:DT204_X 35 -0.199 0.140 0.961 0.011 5.223 1 20 W 221 X 203 -2.742 W_DT221:DA203_X 36 -9.713 0.120 0.160 -0.076 12.474 1 19 W 222 X 202 -0.652 W_DC222:DG202_X 37 -13.542 -0.050 -0.179 -0.003 -5.523 Z 201 Z 221 -17.702 Z_DA201:DT221_Z 38 -10.055 1.107 -1.130 -0.705 -2.819 1 4 Z 202 Z 220 -0.371 Z_DG202:DG220_Z 39 -3.806 0.026 -0.197 -0.067 -12.871 5 Z 203 Z 219 2.812 Z_DA203:DG219_Z 40 -0.987 0.208 -0.076 0.020 -5.383 5 Y 206 Y 220 -1.677 Y_DG206:DA220_Y 41 -1.279 -0.092 0.482 0.246 7.591 1 20 Z 205 Z 217 5.101 Z_DT205:DA217_Z 42 -9.017 -0.033 -1.124 -0.123 3.235 1 20 Y 207 Y 219 5.140 Y_DT207:DA219_Y 43 -5.826 0.003 -0.830 -0.102 4.223 1 19 Z 206 Z 216 0.550 Z_DG206:DC216_Z 44 -1.028 -0.110 -0.389 0.021 1.778 1 19 Y 208 Y 218 0.584 Y_DG208:DC218_Y 45 -2.121 -0.046 -0.420 -0.054 5.009 1 19 Z 207 Z 215 -4.583 Z_DC207:DG215_Z 46 2.360 -0.166 -0.336 -0.063 3.515 1 19 Y 209 Y 217 -4.648 Y_DC209:DG217_Y 47 0.320 -0.185 -0.344 -0.047 -4.903 1 20 Y 210 Y 216 -3.052 Y_DA210:DT216_Y 48 6.429 0.142 -0.721 -0.088 -7.110 1 20 Z 208 Z 214 -3.016 Z_DA208:DT214_Z 49 5.873 0.154 -0.916 -0.072 3.870 1 Y 211 Y 215 3.199 Y_DC211:DA215_Y 50 -10.247 0.268 -0.572 0.040 -5.819 1 Z 209 Z 213 2.137 Z_DT209:DG213_Z 51 -10.705 -0.156 -0.378 -0.045 12.493 1 20 Y 212 Y 214 1.913 Y_DT212:DA214_Y 52 -17.360 0.036 -0.130 -0.094 12.019 1 20 Z 210 Z 212 0.985 Z_DT210:DA212_Z 53 -15.805 0.158 -0.227 -0.073 3.917 34.795 U U 204 205 -8.192 V V 220 219 3.871 -4.883 -0.443 -0.670 UU_DC204DC205:DG219DG220_VV 1 0.689 -1.156 34.454 -0.230 0.867 3.012 39.507 U U 205 206 1.630 V V 219 218 3.040 1.096 -0.141 -0.060 UU_DC205DG206:DC218DG219_VV 2 -7.533 11.209 38.796 -0.209 -0.619 3.337 35.610 U U 206 207 -6.990 V V 218 217 3.270 -4.255 1.212 0.274 UU_DG206DT207:DA217DC218_VV 3 4.411 -7.247 35.096 1.078 -1.328 3.387 36.016 U U 207 208 13.847 V V 217 216 3.374 8.455 -0.848 1.151 UU_DT207DG208:DC216DA217_VV 4 5.409 -8.858 34.634 0.593 2.183 2.828 37.735 U U 208 209 9.636 V V 216 215 2.879 6.204 -0.445 0.030 UU_DG208DC209:DG215DC216_VV 5 1.529 -2.375 37.210 -0.659 0.861 2.418 29.525 U U 209 210 24.401 V V 215 214 3.105 12.001 -0.017 -0.900 UU_DC209DA210:DT214DG215_VV 6 5.895 -11.987 26.384 -4.048 1.155 2.564 26.224 U U 210 211 25.534 V V 214 213 3.629 11.079 0.754 -0.943 UU_DA210DC211:DG213DT214_VV 7 -7.016 16.170 22.759 -5.121 -3.589 2.894 37.502 U U 211 212 6.455 V V 213 212 2.931 4.136 -0.505 0.383 UU_DC211DT212:DA212DG213_VV 8 3.666 -5.722 37.107 0.112 1.215 3.136 36.829 U U 212 213 -7.939 V V 212 211 3.217 -4.998 0.301 0.501 UU_DT212DC213:DG211DA212_VV 9 2.470 -3.924 36.420 1.456 -0.149 3.883 50.205 U U 213 214 -15.170 V V 211 210 4.320 -12.740 -0.113 1.306 UU_DC213DA214:DT210DG211_VV 10 -3.231 3.847 48.562 2.710 -0.163 3.020 34.136 U U 214 215 13.022 V V 210 209 3.108 7.584 0.136 -0.061 UU_DA214DA215:DT209DT210_VV 11 -0.279 0.478 33.306 -1.243 -0.273 2.658 28.117 U U 215 216 14.054 V V 209 208 2.853 6.741 0.354 -0.577 UU_DA215DT216:DA208DT209_VV 12 4.009 -8.358 27.022 -2.548 0.080 2.996 37.039 U U 216 217 31.264 V V 208 207 3.618 18.968 -0.991 -0.365 UU_DT216DG217:DC207DA208_VV 13 -1.778 2.931 31.912 -3.358 1.300 2.713 28.110 U U 217 218 2.258 V V 207 206 2.822 1.092 0.339 -0.662 UU_DG217DC218:DG206DC207_VV 14 -4.252 8.788 27.772 -1.581 -1.548 3.032 39.036 U U 218 219 8.151 V V 206 205 2.851 5.425 0.726 1.207 UU_DC218DA219:DT205DG206_VV 15 3.001 -4.509 38.559 1.214 -0.759 4.314 42.934 U U 219 220 -1.652 V V 205 204 4.142 -1.201 -1.334 0.354 UU_DA219DA220:DT204DT205_VV 16 -9.015 12.403 42.004 0.639 0.653 3.137 32.789 W W 203 204 6.744 X X 221 220 3.226 3.728 0.296 0.128 WW_DA203DC204:DG220DT221_XX 17 11.028 -19.948 30.706 -0.419 1.385 3.536 36.061 W W 204 205 23.585 X X 220 219 4.069 14.228 0.150 -0.575 WW_DC204DC205:DG219DG220_XX 18 -0.330 0.548 33.220 -3.377 -0.299 3.480 36.580 W W 205 206 -5.643 X X 219 218 3.426 -3.527 -0.587 -0.231 WW_DC205DG206:DC218DG219_XX 19 -4.940 7.905 36.089 0.148 0.213 3.493 35.056 W W 206 207 -0.857 X X 218 217 3.347 -0.516 1.754 -0.046 WW_DG206DT207:DA217DC218_XX 20 3.280 -5.453 34.903 0.005 -2.396 2.939 35.222 W W 207 208 4.159 X X 217 216 2.918 2.513 -0.189 0.693 WW_DT207DG208:DC216DA217_XX 21 2.511 -4.157 35.048 0.810 0.647 3.320 37.175 W W 208 209 20.832 X X 216 215 3.831 13.013 -0.762 -0.926 WW_DG208DC209:DG215DC216_XX 22 -1.700 2.721 34.859 -3.413 0.940 3.067 36.048 W W 209 210 16.174 X X 215 214 3.420 9.784 0.521 -0.953 WW_DC209DA210:DT214DG215_XX 23 9.117 -15.070 33.552 -2.970 0.491 2.604 25.626 W W 210 211 2.090 X X 214 213 2.617 0.927 -0.143 -0.365 WW_DA210DC211:DG213DT214_XX 24 -0.446 1.006 25.606 -1.033 0.221 3.274 35.514 W W 211 212 11.067 X X 213 212 3.332 6.706 -0.490 -0.157 WW_DC211DT212:DA212DG213_XX 25 -2.703 4.461 34.793 -1.258 0.399 3.351 41.737 W W 212 213 -11.543 X X 212 211 3.414 -8.126 0.985 0.680 WW_DT212DC213:DG211DA212_XX 26 8.234 -11.698 40.171 1.857 -0.468 3.848 45.391 W W 213 214 -9.686 X X 211 210 4.105 -7.444 0.004 1.330 WW_DC213DA214:DT210DG211_XX 27 0.285 -0.371 44.807 2.530 0.026 2.858 33.257 W W 214 215 17.215 X X 210 209 3.022 9.686 -0.038 -0.056 WW_DA214DA215:DT209DT210_XX 28 -4.597 8.171 31.528 -1.594 -0.643 2.992 27.942 W W 215 216 8.509 X X 209 208 3.075 4.031 0.584 -0.600 WW_DA215DT216:DA208DT209_XX 29 8.509 -17.961 26.337 -2.158 0.724 3.085 35.622 W W 216 217 23.340 X X 208 207 3.446 13.868 -0.701 -0.440 WW_DT216DG217:DC207DA208_XX 30 -5.308 8.933 32.470 -2.832 0.338 3.188 33.938 W W 217 218 4.596 X X 207 206 3.320 2.677 0.582 -0.865 WW_DG217DC218:DG206DC207_XX 31 -2.748 4.717 33.726 -1.911 -1.437 3.802 37.787 W W 218 219 23.462 X X 206 205 3.733 14.780 1.019 0.681 WW_DC218DA219:DT205DG206_XX 32 4.470 -7.095 34.594 -1.248 -0.878 3.450 36.450 W W 219 220 -9.087 X X 205 204 3.219 -5.610 -1.992 0.717 WW_DA219DA220:DT204DT205_XX 33 -8.732 14.144 34.989 1.958 1.923 3.395 35.921 W W 220 221 -2.872 X X 204 203 3.253 -1.756 0.778 -1.141 WW_DA220DT221:DA203DT204_XX 34 8.023 -13.118 35.000 -1.591 -0.081 2.771 36.727 W W 221 222 8.700 X X 203 202 2.840 5.435 0.498 -0.578 WW_DT221DC222:DG202DA203_XX 35 6.551 -10.486 35.760 -1.563 -0.012 2.833 29.031 Z Z 201 202 21.007 Z Z 221 220 3.215 10.180 0.814 0.442 ZZ_DA201DG202:DG220DT221_ZZ 36 -7.827 16.152 26.091 -1.305 -3.305 3.583 39.492 Z Z 202 203 -0.409 Z Z 220 219 3.565 -0.275 -0.359 -0.375 ZZ_DG202DA203:DG219DG220_ZZ 37 -5.699 8.461 39.094 -0.519 -0.206 3.389 35.739 Z Y 203 206 -7.004 Z Y 219 220 3.314 -4.272 -0.455 -0.575 ZY_DA203DG206:DA220DG219_YZ 38 -5.611 9.200 35.058 -0.299 -0.097 3.381 40.023 Y Z 206 205 -1.655 Y Z 220 217 3.039 -1.098 1.541 0.861 YZ_DG206DT205:DA217DA220_ZY 39 17.323 -26.112 36.203 1.389 -0.195 -0.013 -2.597 Z Y 205 207 -47.850 Z Y 217 219 0.119 1.427 -0.018 0.007 ZY_DT205DT207:DA219DA217_YZ 40 -2.165 -72.561 -0.140 -1.379 -2.257 3.660 34.376 Y Z 207 206 19.094 Y Z 219 216 3.304 11.065 -0.781 1.443 YZ_DT207DG206:DC216DA219_ZY 41 -4.397 7.588 32.307 0.540 0.565 -0.014 -1.173 Z Y 206 208 -88.547 Z Y 216 218 0.081 1.166 -0.003 0.015 ZY_DG206DG208:DC218DC216_YZ 42 0.123 9.339 -0.020 -3.962 0.197 2.866 34.474 Y Z 208 207 14.828 Y Z 218 215 3.109 8.690 -0.554 -0.736 YZ_DG208DC207:DG215DC218_ZY 43 -2.622 4.473 33.293 -2.497 0.555 0.008 0.790 Z Y 207 209 66.502 Z Y 215 217 0.032 0.617 0.007 0.001 ZY_DC207DC209:DG217DG215_YZ 44 0.489 -52.702 0.071 -1.993 1.142 3.116 35.148 Y Y 209 210 19.484 Y Y 217 216 3.405 11.544 0.988 -0.579 YY_DC209DA210:DT216DG217_YY 45 3.257 -5.498 33.099 -2.733 -1.136 0.007 -1.195 Y Z 210 208 -62.200 Y Z 216 214 0.083 0.921 0.005 0.007 YZ_DA210DA208:DT214DT216_ZY 46 0.729 49.231 -0.221 -3.109 2.460 2.824 28.501 Z Y 208 211 20.052 Z Y 214 215 3.188 9.678 -0.411 -0.455 ZY_DA208DC211:DA215DT214_YZ 47 1.678 -3.478 26.788 -3.021 1.199 0.129 -4.157 Y Z 211 209 -54.058 Y Z 215 213 0.310 3.264 -0.081 0.004 YZ_DC211DT209:DG213DA215_ZY 48 -1.435 -23.772 -2.139 -3.188 -2.492 2.899 34.488 Z Y 209 212 4.775 Z Y 213 214 2.881 2.828 -0.154 0.311 ZY_DT209DT212:DA214DG213_YZ 49 -0.512 0.864 34.372 0.136 0.190 0.003 -0.689 Y Z 212 210 -14.474 Y Z 214 212 0.016 0.142 0.008 -0.009 YZ_DT212DT210:DA212DA214_ZY 50 0.592 60.330 -0.323 0.559 1.567 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2001-07-05 1 1 2011-05-08 1 2 2011-07-13 1 3 2023-12-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq.db_align_beg TRANSCRIPTIONAL REPRESSOR COPG/DEOXYRIBONUCLEIC ACID COMPLEX TRANSCRIPTIONAL REPRESSOR COPG PDBE Y PDBE 2000-11-05 REL 1 H O HOH 2002 6.57 1 Y O HOH 2001 6.26 1 Y O HOH 2002 6.55 HOH water REGULATES THE PLASMID COPY NUMBER BY BINDING TO THE REPAB PROMOTER THUS CONTROLING THE SYNTHESIS OF THE PLASMID REPLICATION INITIATOR PROTEIN REPB AND ITS OWN ONE. 1B01 PDB ENTRY 1B01 PDB experimental model HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2001 4 HOH HOH 2001 D HOH 2002 4 HOH HOH 2002 D HOH 2003 4 HOH HOH 2003 D HOH 2004 4 HOH HOH 2004 D HOH 2005 4 HOH HOH 2005 D HOH 2006 4 HOH HOH 2006 D HOH 2007 4 HOH HOH 2007 D HOH 2008 4 HOH HOH 2008 D HOH 2001 4 HOH HOH 2001 E HOH 2002 4 HOH HOH 2002 E HOH 2003 4 HOH HOH 2003 E HOH 2004 4 HOH HOH 2004 E HOH 2005 4 HOH HOH 2005 E HOH 2001 4 HOH HOH 2001 F HOH 2002 4 HOH HOH 2002 F HOH 2003 4 HOH HOH 2003 F HOH 2004 4 HOH HOH 2004 F HOH 2005 4 HOH HOH 2005 F HOH 2006 4 HOH HOH 2006 F HOH 2001 4 HOH HOH 2001 G HOH 2002 4 HOH HOH 2002 G HOH 2003 4 HOH HOH 2003 G HOH 2004 4 HOH HOH 2004 G HOH 2005 4 HOH HOH 2005 G HOH 2001 4 HOH HOH 2001 H HOH 2002 4 HOH HOH 2002 H HOH 2003 4 HOH HOH 2003 H HOH 2004 4 HOH HOH 2004 H HOH 2001 4 HOH HOH 2001 J HOH 2002 4 HOH HOH 2002 J HOH 2003 4 HOH HOH 2003 J HOH 2004 4 HOH HOH 2004 J HOH 2005 4 HOH HOH 2005 J HOH 2001 4 HOH HOH 2001 K HOH 2002 4 HOH HOH 2002 K HOH 2003 4 HOH HOH 2003 K HOH 2004 4 HOH HOH 2004 K HOH 2005 4 HOH HOH 2005 K HOH 2006 4 HOH HOH 2006 K HOH 2001 4 HOH HOH 2001 L HOH 2002 4 HOH HOH 2002 L HOH 2003 4 HOH HOH 2003 L HOH 2004 4 HOH HOH 2004 L HOH 2005 4 HOH HOH 2005 L HOH 2006 4 HOH HOH 2006 L HOH 2001 4 HOH HOH 2001 U HOH 2002 4 HOH HOH 2002 U HOH 2003 4 HOH HOH 2003 U HOH 2004 4 HOH HOH 2004 U HOH 2005 4 HOH HOH 2005 U HOH 2006 4 HOH HOH 2006 U HOH 2007 4 HOH HOH 2007 U HOH 2008 4 HOH HOH 2008 U HOH 2009 4 HOH HOH 2009 U HOH 2010 4 HOH HOH 2010 U HOH 2011 4 HOH HOH 2011 U HOH 2001 4 HOH HOH 2001 V HOH 2002 4 HOH HOH 2002 V HOH 2003 4 HOH HOH 2003 V HOH 2004 4 HOH HOH 2004 V HOH 2005 4 HOH HOH 2005 V HOH 2006 4 HOH HOH 2006 V HOH 2007 4 HOH HOH 2007 V HOH 2008 4 HOH HOH 2008 V HOH 2009 4 HOH HOH 2009 V HOH 2001 4 HOH HOH 2001 W HOH 2002 4 HOH HOH 2002 W HOH 2001 4 HOH HOH 2001 X HOH 2002 4 HOH HOH 2002 X HOH 2003 4 HOH HOH 2003 X HOH 2004 4 HOH HOH 2004 X HOH 2005 4 HOH HOH 2005 X HOH 2006 4 HOH HOH 2006 X HOH 2007 4 HOH HOH 2007 X HOH 2008 4 HOH HOH 2008 X HOH 2001 4 HOH HOH 2001 Y HOH 2002 4 HOH HOH 2002 Y HOH 2003 4 HOH HOH 2003 Y HOH 2004 4 HOH HOH 2004 Y HOH 2005 4 HOH HOH 2005 Y HOH 2006 4 HOH HOH 2006 Y HOH 2007 4 HOH HOH 2007 Y HOH 2008 4 HOH HOH 2008 Y HOH 2009 4 HOH HOH 2009 Y HOH 2001 4 HOH HOH 2001 Z HOH 2002 4 HOH HOH 2002 Z HOH 2003 4 HOH HOH 2003 Z n 1 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A ARG 4 n 4 ARG 4 A LEU 5 n 5 LEU 5 A THR 6 n 6 THR 6 A ILE 7 n 7 ILE 7 A THR 8 n 8 THR 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A GLU 11 n 11 GLU 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A LEU 14 n 14 LEU 14 A GLU 15 n 15 GLU 15 A ASN 16 n 16 ASN 16 A LEU 17 n 17 LEU 17 A GLU 18 n 18 GLU 18 A LYS 19 n 19 LYS 19 A MET 20 n 20 MET 20 A ALA 21 n 21 ALA 21 A ARG 22 n 22 ARG 22 A GLU 23 n 23 GLU 23 A MET 24 n 24 MET 24 A GLY 25 n 25 GLY 25 A LEU 26 n 26 LEU 26 A SER 27 n 27 SER 27 A LYS 28 n 28 LYS 28 A SER 29 n 29 SER 29 A ALA 30 n 30 ALA 30 A MET 31 n 31 MET 31 A ILE 32 n 32 ILE 32 A SER 33 n 33 SER 33 A VAL 34 n 34 VAL 34 A ALA 35 n 35 ALA 35 A LEU 36 n 36 LEU 36 A GLU 37 n 37 GLU 37 A ASN 38 n 38 ASN 38 A TYR 39 n 39 TYR 39 A LYS 40 n 40 LYS 40 A LYS 41 n 41 LYS 41 A GLY 42 n 42 GLY 42 A GLN 43 n 43 GLN 43 A n 44 44 A n 45 45 A MET 1 n 1 MET 1 B LYS 2 n 2 LYS 2 B LYS 3 n 3 LYS 3 B ARG 4 n 4 ARG 4 B LEU 5 n 5 LEU 5 B THR 6 n 6 THR 6 B ILE 7 n 7 ILE 7 B THR 8 n 8 THR 8 B LEU 9 n 9 LEU 9 B SER 10 n 10 SER 10 B GLU 11 n 11 GLU 11 B SER 12 n 12 SER 12 B VAL 13 n 13 VAL 13 B LEU 14 n 14 LEU 14 B GLU 15 n 15 GLU 15 B ASN 16 n 16 ASN 16 B LEU 17 n 17 LEU 17 B GLU 18 n 18 GLU 18 B LYS 19 n 19 LYS 19 B MET 20 n 20 MET 20 B ALA 21 n 21 ALA 21 B ARG 22 n 22 ARG 22 B GLU 23 n 23 GLU 23 B MET 24 n 24 MET 24 B GLY 25 n 25 GLY 25 B LEU 26 n 26 LEU 26 B SER 27 n 27 SER 27 B LYS 28 n 28 LYS 28 B SER 29 n 29 SER 29 B ALA 30 n 30 ALA 30 B MET 31 n 31 MET 31 B ILE 32 n 32 ILE 32 B SER 33 n 33 SER 33 B VAL 34 n 34 VAL 34 B ALA 35 n 35 ALA 35 B LEU 36 n 36 LEU 36 B GLU 37 n 37 GLU 37 B ASN 38 n 38 ASN 38 B TYR 39 n 39 TYR 39 B LYS 40 n 40 LYS 40 B LYS 41 n 41 LYS 41 B n 42 42 B n 43 43 B n 44 44 B n 45 45 B MET 1 n 1 MET 1 D LYS 2 n 2 LYS 2 D LYS 3 n 3 LYS 3 D ARG 4 n 4 ARG 4 D LEU 5 n 5 LEU 5 D THR 6 n 6 THR 6 D ILE 7 n 7 ILE 7 D THR 8 n 8 THR 8 D LEU 9 n 9 LEU 9 D SER 10 n 10 SER 10 D GLU 11 n 11 GLU 11 D SER 12 n 12 SER 12 D VAL 13 n 13 VAL 13 D LEU 14 n 14 LEU 14 D GLU 15 n 15 GLU 15 D ASN 16 n 16 ASN 16 D LEU 17 n 17 LEU 17 D GLU 18 n 18 GLU 18 D LYS 19 n 19 LYS 19 D MET 20 n 20 MET 20 D ALA 21 n 21 ALA 21 D ARG 22 n 22 ARG 22 D GLU 23 n 23 GLU 23 D MET 24 n 24 MET 24 D GLY 25 n 25 GLY 25 D LEU 26 n 26 LEU 26 D SER 27 n 27 SER 27 D LYS 28 n 28 LYS 28 D SER 29 n 29 SER 29 D ALA 30 n 30 ALA 30 D MET 31 n 31 MET 31 D ILE 32 n 32 ILE 32 D SER 33 n 33 SER 33 D VAL 34 n 34 VAL 34 D ALA 35 n 35 ALA 35 D LEU 36 n 36 LEU 36 D GLU 37 n 37 GLU 37 D ASN 38 n 38 ASN 38 D TYR 39 n 39 TYR 39 D LYS 40 n 40 LYS 40 D LYS 41 n 41 LYS 41 D GLY 42 n 42 GLY 42 D GLN 43 n 43 GLN 43 D n 44 44 D n 45 45 D MET 1 n 1 MET 1 E LYS 2 n 2 LYS 2 E LYS 3 n 3 LYS 3 E ARG 4 n 4 ARG 4 E LEU 5 n 5 LEU 5 E THR 6 n 6 THR 6 E ILE 7 n 7 ILE 7 E THR 8 n 8 THR 8 E LEU 9 n 9 LEU 9 E SER 10 n 10 SER 10 E GLU 11 n 11 GLU 11 E SER 12 n 12 SER 12 E VAL 13 n 13 VAL 13 E LEU 14 n 14 LEU 14 E GLU 15 n 15 GLU 15 E ASN 16 n 16 ASN 16 E LEU 17 n 17 LEU 17 E GLU 18 n 18 GLU 18 E LYS 19 n 19 LYS 19 E MET 20 n 20 MET 20 E ALA 21 n 21 ALA 21 E ARG 22 n 22 ARG 22 E GLU 23 n 23 GLU 23 E MET 24 n 24 MET 24 E GLY 25 n 25 GLY 25 E LEU 26 n 26 LEU 26 E SER 27 n 27 SER 27 E LYS 28 n 28 LYS 28 E SER 29 n 29 SER 29 E ALA 30 n 30 ALA 30 E MET 31 n 31 MET 31 E ILE 32 n 32 ILE 32 E SER 33 n 33 SER 33 E VAL 34 n 34 VAL 34 E ALA 35 n 35 ALA 35 E LEU 36 n 36 LEU 36 E GLU 37 n 37 GLU 37 E ASN 38 n 38 ASN 38 E TYR 39 n 39 TYR 39 E LYS 40 n 40 LYS 40 E LYS 41 n 41 LYS 41 E GLY 42 n 42 GLY 42 E GLN 43 n 43 GLN 43 E GLU 44 n 44 GLU 44 E n 45 45 E MET 1 n 1 MET 1 F LYS 2 n 2 LYS 2 F LYS 3 n 3 LYS 3 F ARG 4 n 4 ARG 4 F LEU 5 n 5 LEU 5 F THR 6 n 6 THR 6 F ILE 7 n 7 ILE 7 F THR 8 n 8 THR 8 F LEU 9 n 9 LEU 9 F SER 10 n 10 SER 10 F GLU 11 n 11 GLU 11 F SER 12 n 12 SER 12 F VAL 13 n 13 VAL 13 F LEU 14 n 14 LEU 14 F GLU 15 n 15 GLU 15 F ASN 16 n 16 ASN 16 F LEU 17 n 17 LEU 17 F GLU 18 n 18 GLU 18 F LYS 19 n 19 LYS 19 F MET 20 n 20 MET 20 F ALA 21 n 21 ALA 21 F ARG 22 n 22 ARG 22 F GLU 23 n 23 GLU 23 F MET 24 n 24 MET 24 F GLY 25 n 25 GLY 25 F LEU 26 n 26 LEU 26 F SER 27 n 27 SER 27 F LYS 28 n 28 LYS 28 F SER 29 n 29 SER 29 F ALA 30 n 30 ALA 30 F MET 31 n 31 MET 31 F ILE 32 n 32 ILE 32 F SER 33 n 33 SER 33 F VAL 34 n 34 VAL 34 F ALA 35 n 35 ALA 35 F LEU 36 n 36 LEU 36 F GLU 37 n 37 GLU 37 F ASN 38 n 38 ASN 38 F TYR 39 n 39 TYR 39 F LYS 40 n 40 LYS 40 F LYS 41 n 41 LYS 41 F GLY 42 n 42 GLY 42 F GLN 43 n 43 GLN 43 F GLU 44 n 44 GLU 44 F LYS 45 n 45 LYS 45 F MET 1 n 1 MET 1 G LYS 2 n 2 LYS 2 G LYS 3 n 3 LYS 3 G ARG 4 n 4 ARG 4 G LEU 5 n 5 LEU 5 G THR 6 n 6 THR 6 G ILE 7 n 7 ILE 7 G THR 8 n 8 THR 8 G LEU 9 n 9 LEU 9 G SER 10 n 10 SER 10 G GLU 11 n 11 GLU 11 G SER 12 n 12 SER 12 G VAL 13 n 13 VAL 13 G LEU 14 n 14 LEU 14 G GLU 15 n 15 GLU 15 G ASN 16 n 16 ASN 16 G LEU 17 n 17 LEU 17 G GLU 18 n 18 GLU 18 G LYS 19 n 19 LYS 19 G MET 20 n 20 MET 20 G ALA 21 n 21 ALA 21 G ARG 22 n 22 ARG 22 G GLU 23 n 23 GLU 23 G MET 24 n 24 MET 24 G GLY 25 n 25 GLY 25 G LEU 26 n 26 LEU 26 G SER 27 n 27 SER 27 G LYS 28 n 28 LYS 28 G SER 29 n 29 SER 29 G ALA 30 n 30 ALA 30 G MET 31 n 31 MET 31 G ILE 32 n 32 ILE 32 G SER 33 n 33 SER 33 G VAL 34 n 34 VAL 34 G ALA 35 n 35 ALA 35 G LEU 36 n 36 LEU 36 G GLU 37 n 37 GLU 37 G ASN 38 n 38 ASN 38 G TYR 39 n 39 TYR 39 G LYS 40 n 40 LYS 40 G LYS 41 n 41 LYS 41 G GLY 42 n 42 GLY 42 G n 43 43 G n 44 44 G n 45 45 G n 1 1 H LYS 2 n 2 LYS 2 H LYS 3 n 3 LYS 3 H ARG 4 n 4 ARG 4 H LEU 5 n 5 LEU 5 H THR 6 n 6 THR 6 H ILE 7 n 7 ILE 7 H THR 8 n 8 THR 8 H LEU 9 n 9 LEU 9 H SER 10 n 10 SER 10 H GLU 11 n 11 GLU 11 H SER 12 n 12 SER 12 H VAL 13 n 13 VAL 13 H LEU 14 n 14 LEU 14 H GLU 15 n 15 GLU 15 H ASN 16 n 16 ASN 16 H LEU 17 n 17 LEU 17 H GLU 18 n 18 GLU 18 H LYS 19 n 19 LYS 19 H MET 20 n 20 MET 20 H ALA 21 n 21 ALA 21 H ARG 22 n 22 ARG 22 H GLU 23 n 23 GLU 23 H MET 24 n 24 MET 24 H GLY 25 n 25 GLY 25 H LEU 26 n 26 LEU 26 H SER 27 n 27 SER 27 H LYS 28 n 28 LYS 28 H SER 29 n 29 SER 29 H ALA 30 n 30 ALA 30 H MET 31 n 31 MET 31 H ILE 32 n 32 ILE 32 H SER 33 n 33 SER 33 H VAL 34 n 34 VAL 34 H ALA 35 n 35 ALA 35 H LEU 36 n 36 LEU 36 H GLU 37 n 37 GLU 37 H ASN 38 n 38 ASN 38 H TYR 39 n 39 TYR 39 H LYS 40 n 40 LYS 40 H LYS 41 n 41 LYS 41 H GLY 42 n 42 GLY 42 H GLN 43 n 43 GLN 43 H GLU 44 n 44 GLU 44 H LYS 45 n 45 LYS 45 H MET 1 n 1 MET 1 J LYS 2 n 2 LYS 2 J LYS 3 n 3 LYS 3 J ARG 4 n 4 ARG 4 J LEU 5 n 5 LEU 5 J THR 6 n 6 THR 6 J ILE 7 n 7 ILE 7 J THR 8 n 8 THR 8 J LEU 9 n 9 LEU 9 J SER 10 n 10 SER 10 J GLU 11 n 11 GLU 11 J SER 12 n 12 SER 12 J VAL 13 n 13 VAL 13 J LEU 14 n 14 LEU 14 J GLU 15 n 15 GLU 15 J ASN 16 n 16 ASN 16 J LEU 17 n 17 LEU 17 J GLU 18 n 18 GLU 18 J LYS 19 n 19 LYS 19 J MET 20 n 20 MET 20 J ALA 21 n 21 ALA 21 J ARG 22 n 22 ARG 22 J GLU 23 n 23 GLU 23 J MET 24 n 24 MET 24 J GLY 25 n 25 GLY 25 J LEU 26 n 26 LEU 26 J SER 27 n 27 SER 27 J LYS 28 n 28 LYS 28 J SER 29 n 29 SER 29 J ALA 30 n 30 ALA 30 J MET 31 n 31 MET 31 J ILE 32 n 32 ILE 32 J SER 33 n 33 SER 33 J VAL 34 n 34 VAL 34 J ALA 35 n 35 ALA 35 J LEU 36 n 36 LEU 36 J GLU 37 n 37 GLU 37 J ASN 38 n 38 ASN 38 J TYR 39 n 39 TYR 39 J LYS 40 n 40 LYS 40 J LYS 41 n 41 LYS 41 J GLY 42 n 42 GLY 42 J GLN 43 n 43 GLN 43 J GLU 44 n 44 GLU 44 J n 45 45 J MET 1 n 1 MET 1 K LYS 2 n 2 LYS 2 K LYS 3 n 3 LYS 3 K ARG 4 n 4 ARG 4 K LEU 5 n 5 LEU 5 K THR 6 n 6 THR 6 K ILE 7 n 7 ILE 7 K THR 8 n 8 THR 8 K LEU 9 n 9 LEU 9 K SER 10 n 10 SER 10 K GLU 11 n 11 GLU 11 K SER 12 n 12 SER 12 K VAL 13 n 13 VAL 13 K LEU 14 n 14 LEU 14 K GLU 15 n 15 GLU 15 K ASN 16 n 16 ASN 16 K LEU 17 n 17 LEU 17 K GLU 18 n 18 GLU 18 K LYS 19 n 19 LYS 19 K MET 20 n 20 MET 20 K ALA 21 n 21 ALA 21 K ARG 22 n 22 ARG 22 K GLU 23 n 23 GLU 23 K MET 24 n 24 MET 24 K GLY 25 n 25 GLY 25 K LEU 26 n 26 LEU 26 K SER 27 n 27 SER 27 K LYS 28 n 28 LYS 28 K SER 29 n 29 SER 29 K ALA 30 n 30 ALA 30 K MET 31 n 31 MET 31 K ILE 32 n 32 ILE 32 K SER 33 n 33 SER 33 K VAL 34 n 34 VAL 34 K ALA 35 n 35 ALA 35 K LEU 36 n 36 LEU 36 K GLU 37 n 37 GLU 37 K ASN 38 n 38 ASN 38 K TYR 39 n 39 TYR 39 K LYS 40 n 40 LYS 40 K LYS 41 n 41 LYS 41 K GLY 42 n 42 GLY 42 K GLN 43 n 43 GLN 43 K n 44 44 K n 45 45 K MET 1 n 1 MET 1 L LYS 2 n 2 LYS 2 L LYS 3 n 3 LYS 3 L ARG 4 n 4 ARG 4 L LEU 5 n 5 LEU 5 L THR 6 n 6 THR 6 L ILE 7 n 7 ILE 7 L THR 8 n 8 THR 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L GLU 11 n 11 GLU 11 L SER 12 n 12 SER 12 L VAL 13 n 13 VAL 13 L LEU 14 n 14 LEU 14 L GLU 15 n 15 GLU 15 L ASN 16 n 16 ASN 16 L LEU 17 n 17 LEU 17 L GLU 18 n 18 GLU 18 L LYS 19 n 19 LYS 19 L MET 20 n 20 MET 20 L ALA 21 n 21 ALA 21 L ARG 22 n 22 ARG 22 L GLU 23 n 23 GLU 23 L MET 24 n 24 MET 24 L GLY 25 n 25 GLY 25 L LEU 26 n 26 LEU 26 L SER 27 n 27 SER 27 L LYS 28 n 28 LYS 28 L SER 29 n 29 SER 29 L ALA 30 n 30 ALA 30 L MET 31 n 31 MET 31 L ILE 32 n 32 ILE 32 L SER 33 n 33 SER 33 L VAL 34 n 34 VAL 34 L ALA 35 n 35 ALA 35 L LEU 36 n 36 LEU 36 L GLU 37 n 37 GLU 37 L ASN 38 n 38 ASN 38 L TYR 39 n 39 TYR 39 L LYS 40 n 40 LYS 40 L LYS 41 n 41 LYS 41 L GLY 42 n 42 GLY 42 L GLN 43 n 43 GLN 43 L GLU 44 n 44 GLU 44 L n 45 45 L n 1 201 U DA 202 n 2 DA 202 U DA 203 n 3 DA 203 U DC 204 n 4 DC 204 U DC 205 n 5 DC 205 U DG 206 n 6 DG 206 U DT 207 n 7 DT 207 U DG 208 n 8 DG 208 U DC 209 n 9 DC 209 U DA 210 n 10 DA 210 U DC 211 n 11 DC 211 U DT 212 n 12 DT 212 U DC 213 n 13 DC 213 U DA 214 n 14 DA 214 U DA 215 n 15 DA 215 U DT 216 n 16 DT 216 U DG 217 n 17 DG 217 U DC 218 n 18 DC 218 U DA 219 n 19 DA 219 U DA 220 n 20 DA 220 U DT 221 n 21 DT 221 U n 22 222 U DA 201 n 1 DA 201 V DG 202 n 2 DG 202 V DA 203 n 3 DA 203 V DT 204 n 4 DT 204 V DT 205 n 5 DT 205 V DG 206 n 6 DG 206 V DC 207 n 7 DC 207 V DA 208 n 8 DA 208 V DT 209 n 9 DT 209 V DT 210 n 10 DT 210 V DG 211 n 11 DG 211 V DA 212 n 12 DA 212 V DG 213 n 13 DG 213 V DT 214 n 14 DT 214 V DG 215 n 15 DG 215 V DC 216 n 16 DC 216 V DA 217 n 17 DA 217 V DC 218 n 18 DC 218 V DG 219 n 19 DG 219 V DG 220 n 20 DG 220 V DT 221 n 21 DT 221 V n 22 222 V DT 201 n 1 DT 201 W DA 202 n 2 DA 202 W DA 203 n 3 DA 203 W DC 204 n 4 DC 204 W DC 205 n 5 DC 205 W DG 206 n 6 DG 206 W DT 207 n 7 DT 207 W DG 208 n 8 DG 208 W DC 209 n 9 DC 209 W DA 210 n 10 DA 210 W DC 211 n 11 DC 211 W DT 212 n 12 DT 212 W DC 213 n 13 DC 213 W DA 214 n 14 DA 214 W DA 215 n 15 DA 215 W DT 216 n 16 DT 216 W DG 217 n 17 DG 217 W DC 218 n 18 DC 218 W DA 219 n 19 DA 219 W DA 220 n 20 DA 220 W DT 221 n 21 DT 221 W DC 222 n 22 DC 222 W DA 201 n 1 DA 201 X DG 202 n 2 DG 202 X DA 203 n 3 DA 203 X DT 204 n 4 DT 204 X DT 205 n 5 DT 205 X DG 206 n 6 DG 206 X DC 207 n 7 DC 207 X DA 208 n 8 DA 208 X DT 209 n 9 DT 209 X DT 210 n 10 DT 210 X DG 211 n 11 DG 211 X DA 212 n 12 DA 212 X DG 213 n 13 DG 213 X DT 214 n 14 DT 214 X DG 215 n 15 DG 215 X DC 216 n 16 DC 216 X DA 217 n 17 DA 217 X DC 218 n 18 DC 218 X DG 219 n 19 DG 219 X DG 220 n 20 DG 220 X DT 221 n 21 DT 221 X DT 222 n 22 DT 222 X n 1 201 Y DA 202 n 2 DA 202 Y DA 203 n 3 DA 203 Y DC 204 n 4 DC 204 Y DC 205 n 5 DC 205 Y DG 206 n 6 DG 206 Y DT 207 n 7 DT 207 Y DG 208 n 8 DG 208 Y DC 209 n 9 DC 209 Y DA 210 n 10 DA 210 Y DC 211 n 11 DC 211 Y DT 212 n 12 DT 212 Y DC 213 n 13 DC 213 Y DA 214 n 14 DA 214 Y DA 215 n 15 DA 215 Y DT 216 n 16 DT 216 Y DG 217 n 17 DG 217 Y DC 218 n 18 DC 218 Y DA 219 n 19 DA 219 Y DA 220 n 20 DA 220 Y DT 221 n 21 DT 221 Y DC 222 n 22 DC 222 Y DA 201 n 1 DA 201 Z DG 202 n 2 DG 202 Z DA 203 n 3 DA 203 Z DT 204 n 4 DT 204 Z DT 205 n 5 DT 205 Z DG 206 n 6 DG 206 Z DC 207 n 7 DC 207 Z DA 208 n 8 DA 208 Z DT 209 n 9 DT 209 Z DT 210 n 10 DT 210 Z DG 211 n 11 DG 211 Z DA 212 n 12 DA 212 Z DG 213 n 13 DG 213 Z DT 214 n 14 DT 214 Z DG 215 n 15 DG 215 Z DC 216 n 16 DC 216 Z DA 217 n 17 DA 217 Z DC 218 n 18 DC 218 Z DG 219 n 19 DG 219 Z DG 220 n 20 DG 220 Z DT 221 n 21 DT 221 Z n 22 222 Z author_and_software_defined_assembly PQS 32 32-meric author_and_software_defined_assembly PQS 6 hexameric author_and_software_defined_assembly PQS 6 hexameric author_and_software_defined_assembly PQS 8 octameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 213.4000000000 76.0400000000 0.0000000000 A N LYS 3 A N LYS 3 B O LEU 9 B O LEU 9 D N LYS 3 C N LYS 3 E O LEU 9 D O LEU 9 F N LYS 3 E N LYS 3 G O LEU 9 F O LEU 9 H N LYS 3 G N LYS 3 J O LEU 9 H O LEU 9 K N ILE 7 I N ILE 7 L O LEU 5 J O LEU 5 1 U P DA 202 K P DA 2 1 Y 1 U OP1 DA 202 K OP1 DA 2 1 Y 1 U OP2 DA 202 K OP2 DA 2 1 Y 1 U C5' DT 221 K C5' DT 21 1 Y 1 U C4' DT 221 K C4' DT 21 1 Y 1 U O4' DT 221 K O4' DT 21 1 Y 1 U C3' DT 221 K C3' DT 21 1 Y 1 U O3' DT 221 K O3' DT 21 1 Y 1 U C2' DT 221 K C2' DT 21 1 Y 1 U C1' DT 221 K C1' DT 21 1 Y 1 U N1 DT 221 K N1 DT 21 1 Y 1 U C2 DT 221 K C2 DT 21 1 Y 1 U O2 DT 221 K O2 DT 21 1 Y 1 U N3 DT 221 K N3 DT 21 1 Y 1 U C4 DT 221 K C4 DT 21 1 Y 1 U O4 DT 221 K O4 DT 21 1 Y 1 U C5 DT 221 K C5 DT 21 1 Y 1 U C7 DT 221 K C7 DT 21 1 Y 1 U C6 DT 221 K C6 DT 21 1 Y 1 V C5' DT 221 L C5' DT 21 1 Y 1 V C4' DT 221 L C4' DT 21 1 Y 1 V O4' DT 221 L O4' DT 21 1 Y 1 V C3' DT 221 L C3' DT 21 1 Y 1 V O3' DT 221 L O3' DT 21 1 Y 1 V C2' DT 221 L C2' DT 21 1 Y 1 V C1' DT 221 L C1' DT 21 1 Y 1 V N1 DT 221 L N1 DT 21 1 Y 1 V C2 DT 221 L C2 DT 21 1 Y 1 V O2 DT 221 L O2 DT 21 1 Y 1 V N3 DT 221 L N3 DT 21 1 Y 1 V C4 DT 221 L C4 DT 21 1 Y 1 V O4 DT 221 L O4 DT 21 1 Y 1 V C5 DT 221 L C5 DT 21 1 Y 1 V C7 DT 221 L C7 DT 21 1 Y 1 V C6 DT 221 L C6 DT 21 1 Y 1 X C5' DT 222 N C5' DT 22 1 Y 1 X C4' DT 222 N C4' DT 22 1 Y 1 X O4' DT 222 N O4' DT 22 1 Y 1 X C3' DT 222 N C3' DT 22 1 Y 1 X O3' DT 222 N O3' DT 22 1 Y 1 X C2' DT 222 N C2' DT 22 1 Y 1 X C1' DT 222 N C1' DT 22 1 Y 1 X N1 DT 222 N N1 DT 22 1 Y 1 X C2 DT 222 N C2 DT 22 1 Y 1 X O2 DT 222 N O2 DT 22 1 Y 1 X N3 DT 222 N N3 DT 22 1 Y 1 X C4 DT 222 N C4 DT 22 1 Y 1 X O4 DT 222 N O4 DT 22 1 Y 1 X C5 DT 222 N C5 DT 22 1 Y 1 X C7 DT 222 N C7 DT 22 1 Y 1 X C6 DT 222 N C6 DT 22 1 Y 1 Y P DA 202 O P DA 2 1 Y 1 Y OP1 DA 202 O OP1 DA 2 1 Y 1 Y OP2 DA 202 O OP2 DA 2 1 Y 1 Y P DC 213 O P DC 13 1 Y 1 Y OP1 DC 213 O OP1 DC 13 1 Y 1 Y OP2 DC 213 O OP2 DC 13 1 Y 1 Z P DA 212 P P DA 12 1 Y 1 Z OP1 DA 212 P OP1 DA 12 1 Y 1 Z OP2 DA 212 P OP2 DA 12 1 Y 1 A MET 1 A MET 1 1 Y 1 A GLU 44 A GLU 44 1 Y 1 A LYS 45 A LYS 45 1 Y 1 B GLY 42 B GLY 42 1 Y 1 B GLN 43 B GLN 43 1 Y 1 B GLU 44 B GLU 44 1 Y 1 B LYS 45 B LYS 45 1 Y 1 D GLU 44 C GLU 44 1 Y 1 D LYS 45 C LYS 45 1 Y 1 E LYS 45 D LYS 45 1 Y 1 G GLN 43 F GLN 43 1 Y 1 G GLU 44 F GLU 44 1 Y 1 G LYS 45 F LYS 45 1 Y 1 H MET 1 G MET 1 1 Y 1 J LYS 45 H LYS 45 1 Y 1 K GLU 44 I GLU 44 1 Y 1 K LYS 45 I LYS 45 1 Y 1 L LYS 45 J LYS 45 1 Y 1 U DT 201 K DT 1 1 Y 1 U DC 222 K DC 22 1 Y 1 V DT 222 L DT 22 1 Y 1 Y DT 201 O DT 1 1 Y 1 Z DT 222 P DT 22 1 Y 1 B B O N TYR LYS 39 41 2.04 1 1.93 0.30 108.30 110.23 V V V O4' C1' N1 DT DT DT 214 214 214 N 1 2.53 0.30 108.30 110.83 Z Z Z O4' C1' N9 DG DG DG 211 211 211 B B B N 1 F F CE NZ LYS LYS 45 45 -0.154 0.025 1.486 1.332 N 1 H H CE NZ LYS LYS 45 45 -0.153 0.025 1.486 1.333 N 1 Z Z N1 C2 DG DG 211 211 0.052 0.008 1.373 1.425 B B N 1 A LYS 19 -53.06 -71.16 1 B LYS 40 -64.46 51.08 1 E GLN 43 -143.29 -31.50 1 F GLN 43 -144.64 26.42 1 F GLU 44 -69.93 -114.96 1 G LYS 2 -178.21 95.67 1 H GLN 43 -88.47 42.64 1 H GLU 44 -127.81 -163.12 1 K LYS 2 -105.94 45.86 1 K LYS 3 -22.13 143.83 1 K LYS 19 -58.29 -70.23 1 L LYS 2 149.48 54.62 1 L LYS 3 -11.12 140.61 1 L LYS 19 -51.95 -71.00 1 L GLN 43 -25.76 -44.20 66.3 NOE RESTRAINTS FOR WATSON & CRICK BASE PAIRING. THE COMPLEX SET UP FOR CRYSTALLIZATION WAS MADE UP BY A COPG DIMER-OF-HOMODIMERS AND A 22-BP DSDNA. THERE ARE 2,5 OF THOSE COMPLEXES IN THE ASYMMETRIC UNIT, DEFG+WX (PROTEIN + DNA), HJKL+UV, AND ABA'B'+YZ. THE LATTER REPRESENTS THE "HALF" COMPLEX. THE OTHER HALF IS CREATED BY A CRYSTALLOGRAPHIC TWOFOLD (RENDERING A' AND B'). THE DNA PART HAS BEEN MODELLED WITH THE TWO OBSERVED ORIENTATIONS, EACH WITH OCCUPANCY 0.5. THERE ARE NCS RESTRAINTS, BUT SO MANY THAT THE MATRICES AND TRANSLATIONS HAVE NOT BEEN INCLUDED IN THIS ENTRY. ESSENTIALLY, ALL PROTEIN CHAINS AND ALL DNA STRANDS HAVE BEEN SUBJECTED TO RESTRAINTS. 0.307 0.230 0.230 2.95 40.00 17507 7.00 96.9 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1B01 MAXIMUM LIKELIHOOD 2.95 40.00 101 6013 0 2535 3377 0.009 1.34 1 RESTRAINTS 1 X-RAY DIFFRACTION 80.8 2.920 43.850 1EA4 17592 0.10600 1 5.9000 5.900 93.6 refinement CNS 1.0 data reduction MOSFLM data scaling SCALA phasing AMoRE TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N FUNCTIONAL TETRAMERS (EACH ONE CONTACTING A 22BP DSDNA)ARE DEFG, HJKL, AND ABA'B' (A' AND B' ARE SYMMETRYEQUIVALENT MOLECULES).TETRAMER DEFG CONTACTS DSDNA WX, HJKL PAIRS UV, ANDABA'B' INTERACTS WITH YZ(DOUBLE OCCUPANCY DUE TO CRYSTALLOGRAPHIC TWOFOLD AXIS)THE BIOMOLECULE 1 IS THE SUPERHELICAL STRUCTURE AND THETETRAMERS CAN BE GENERATED USING THE MATRICES GIVENFOR BIOMOLECULES 2 , 3 AND 4 A GLU 11 A GLU 11 HELX_P A GLY 25 A GLY 25 1 1 15 A SER 27 A SER 27 HELX_P A LYS 40 A LYS 40 1 2 14 B SER 10 B SER 10 HELX_P B MET 24 B MET 24 1 3 15 B SER 27 B SER 27 HELX_P B LYS 40 B LYS 40 1 4 14 D GLU 11 C GLU 11 HELX_P D GLY 25 C GLY 25 1 5 15 D SER 27 C SER 27 HELX_P D LYS 41 C LYS 41 1 6 15 E SER 10 D SER 10 HELX_P E GLY 25 D GLY 25 1 7 16 E SER 27 D SER 27 HELX_P E GLY 42 D GLY 42 1 8 16 F SER 10 E SER 10 HELX_P F GLY 25 E GLY 25 1 9 16 F SER 27 E SER 27 HELX_P F GLY 42 E GLY 42 1 10 16 G GLU 11 F GLU 11 HELX_P G GLY 25 F GLY 25 1 11 15 G SER 27 F SER 27 HELX_P G LYS 41 F LYS 41 1 12 15 H GLU 11 G GLU 11 HELX_P H GLY 25 G GLY 25 1 13 15 H SER 27 G SER 27 HELX_P H GLN 43 G GLN 43 1 14 17 J SER 10 H SER 10 HELX_P J GLY 25 H GLY 25 1 15 16 J SER 27 H SER 27 HELX_P J GLY 42 H GLY 42 1 16 16 K SER 10 I SER 10 HELX_P K GLY 25 I GLY 25 1 17 16 K SER 27 I SER 27 HELX_P K GLY 42 I GLY 42 1 18 16 L SER 10 J SER 10 HELX_P L GLY 25 J GLY 25 1 19 16 L SER 27 J SER 27 HELX_P L GLU 44 J GLU 44 1 20 18 hydrog WATSON-CRICK U DC 204 K N3 DC 4 1_555 V DG 220 L N1 DG 20 1_555 hydrog WATSON-CRICK U DC 204 K N4 DC 4 1_555 V DG 220 L O6 DG 20 1_555 hydrog WATSON-CRICK U DC 204 K O2 DC 4 1_555 V DG 220 L N2 DG 20 1_555 hydrog WATSON-CRICK U DC 205 K N3 DC 5 1_555 V DG 219 L N1 DG 19 1_555 hydrog WATSON-CRICK U DC 205 K N4 DC 5 1_555 V DG 219 L O6 DG 19 1_555 hydrog WATSON-CRICK U DC 205 K O2 DC 5 1_555 V DG 219 L N2 DG 19 1_555 hydrog DG-DC PAIR U DG 206 K N2 DG 6 1_555 V DC 218 L O2 DC 18 1_555 hydrog WATSON-CRICK U DT 207 K N3 DT 7 1_555 V DA 217 L N1 DA 17 1_555 hydrog WATSON-CRICK U DT 207 K O4 DT 7 1_555 V DA 217 L N6 DA 17 1_555 hydrog WATSON-CRICK U DG 208 K N1 DG 8 1_555 V DC 216 L N3 DC 16 1_555 hydrog WATSON-CRICK U DG 208 K N2 DG 8 1_555 V DC 216 L O2 DC 16 1_555 hydrog WATSON-CRICK U DG 208 K O6 DG 8 1_555 V DC 216 L N4 DC 16 1_555 hydrog WATSON-CRICK U DC 209 K N3 DC 9 1_555 V DG 215 L N1 DG 15 1_555 hydrog WATSON-CRICK U DC 209 K N4 DC 9 1_555 V DG 215 L O6 DG 15 1_555 hydrog WATSON-CRICK U DC 209 K O2 DC 9 1_555 V DG 215 L N2 DG 15 1_555 hydrog WATSON-CRICK U DA 210 K N1 DA 10 1_555 V DT 214 L N3 DT 14 1_555 hydrog WATSON-CRICK U DA 210 K N6 DA 10 1_555 V DT 214 L O4 DT 14 1_555 hydrog DC-DG PAIR U DC 211 K O2 DC 11 1_555 V DG 213 L N2 DG 13 1_555 hydrog DT-DA PAIR U DT 212 K N3 DT 12 1_555 V DA 212 L N1 DA 12 1_555 hydrog WATSON-CRICK U DC 213 K N3 DC 13 1_555 V DG 211 L N1 DG 11 1_555 hydrog WATSON-CRICK U DC 213 K N4 DC 13 1_555 V DG 211 L O6 DG 11 1_555 hydrog WATSON-CRICK U DC 213 K O2 DC 13 1_555 V DG 211 L N2 DG 11 1_555 hydrog WATSON-CRICK U DA 214 K N1 DA 14 1_555 V DT 210 L N3 DT 10 1_555 hydrog WATSON-CRICK U DA 214 K N6 DA 14 1_555 V DT 210 L O4 DT 10 1_555 hydrog WATSON-CRICK U DA 215 K N1 DA 15 1_555 V DT 209 L N3 DT 9 1_555 hydrog WATSON-CRICK U DA 215 K N6 DA 15 1_555 V DT 209 L O4 DT 9 1_555 hydrog WATSON-CRICK U DT 216 K N3 DT 16 1_555 V DA 208 L N1 DA 8 1_555 hydrog WATSON-CRICK U DT 216 K O4 DT 16 1_555 V DA 208 L N6 DA 8 1_555 hydrog WATSON-CRICK U DG 217 K N1 DG 17 1_555 V DC 207 L N3 DC 7 1_555 hydrog WATSON-CRICK U DG 217 K N2 DG 17 1_555 V DC 207 L O2 DC 7 1_555 hydrog WATSON-CRICK U DG 217 K O6 DG 17 1_555 V DC 207 L N4 DC 7 1_555 hydrog WATSON-CRICK U DC 218 K N3 DC 18 1_555 V DG 206 L N1 DG 6 1_555 hydrog WATSON-CRICK U DC 218 K N4 DC 18 1_555 V DG 206 L O6 DG 6 1_555 hydrog WATSON-CRICK U DC 218 K O2 DC 18 1_555 V DG 206 L N2 DG 6 1_555 hydrog WATSON-CRICK U DA 219 K N1 DA 19 1_555 V DT 205 L N3 DT 5 1_555 hydrog WATSON-CRICK U DA 219 K N6 DA 19 1_555 V DT 205 L O4 DT 5 1_555 hydrog TYPE_1_PAIR U DA 220 K N1 DA 20 1_555 V DA 203 L N6 DA 3 1_555 hydrog TYPE_1_PAIR U DA 220 K N6 DA 20 1_555 V DA 203 L N1 DA 3 1_555 hydrog WATSON-CRICK U DA 220 K N1 DA 20 1_555 V DT 204 L N3 DT 4 1_555 hydrog WATSON-CRICK U DA 220 K N6 DA 20 1_555 V DT 204 L O4 DT 4 1_555 hydrog WATSON-CRICK W DA 203 M N1 DA 3 1_555 X DT 221 N N3 DT 21 1_555 hydrog WATSON-CRICK W DA 203 M N6 DA 3 1_555 X DT 221 N O4 DT 21 1_555 hydrog WATSON-CRICK W DC 204 M N3 DC 4 1_555 X DG 220 N N1 DG 20 1_555 hydrog WATSON-CRICK W DC 204 M N4 DC 4 1_555 X DG 220 N O6 DG 20 1_555 hydrog WATSON-CRICK W DC 204 M O2 DC 4 1_555 X DG 220 N N2 DG 20 1_555 hydrog WATSON-CRICK W DC 205 M N3 DC 5 1_555 X DG 219 N N1 DG 19 1_555 hydrog WATSON-CRICK W DC 205 M N4 DC 5 1_555 X DG 219 N O6 DG 19 1_555 hydrog WATSON-CRICK W DC 205 M O2 DC 5 1_555 X DG 219 N N2 DG 19 1_555 hydrog TYPE_8_PAIR W DG 206 M N1 DG 6 1_555 X DA 217 N N1 DA 17 1_555 hydrog TYPE_8_PAIR W DG 206 M O6 DG 6 1_555 X DA 217 N N6 DA 17 1_555 hydrog WATSON-CRICK W DG 206 M N1 DG 6 1_555 X DC 218 N N3 DC 18 1_555 hydrog WATSON-CRICK W DG 206 M N2 DG 6 1_555 X DC 218 N O2 DC 18 1_555 hydrog WATSON-CRICK W DG 206 M O6 DG 6 1_555 X DC 218 N N4 DC 18 1_555 hydrog WATSON-CRICK W DT 207 M N3 DT 7 1_555 X DA 217 N N1 DA 17 1_555 hydrog WATSON-CRICK W DT 207 M O4 DT 7 1_555 X DA 217 N N6 DA 17 1_555 hydrog WATSON-CRICK W DG 208 M N1 DG 8 1_555 X DC 216 N N3 DC 16 1_555 hydrog WATSON-CRICK W DG 208 M N2 DG 8 1_555 X DC 216 N O2 DC 16 1_555 hydrog WATSON-CRICK W DG 208 M O6 DG 8 1_555 X DC 216 N N4 DC 16 1_555 hydrog WATSON-CRICK W DC 209 M N3 DC 9 1_555 X DG 215 N N1 DG 15 1_555 hydrog WATSON-CRICK W DC 209 M N4 DC 9 1_555 X DG 215 N O6 DG 15 1_555 hydrog WATSON-CRICK W DC 209 M O2 DC 9 1_555 X DG 215 N N2 DG 15 1_555 hydrog WATSON-CRICK W DA 210 M N1 DA 10 1_555 X DT 214 N N3 DT 14 1_555 hydrog WATSON-CRICK W DA 210 M N6 DA 10 1_555 X DT 214 N O4 DT 14 1_555 hydrog WATSON-CRICK W DC 211 M N3 DC 11 1_555 X DG 213 N N1 DG 13 1_555 hydrog WATSON-CRICK W DC 211 M N4 DC 11 1_555 X DG 213 N O6 DG 13 1_555 hydrog WATSON-CRICK W DC 211 M O2 DC 11 1_555 X DG 213 N N2 DG 13 1_555 hydrog WATSON-CRICK W DT 212 M N3 DT 12 1_555 X DA 212 N N1 DA 12 1_555 hydrog WATSON-CRICK W DT 212 M O4 DT 12 1_555 X DA 212 N N6 DA 12 1_555 hydrog WATSON-CRICK W DC 213 M N3 DC 13 1_555 X DG 211 N N1 DG 11 1_555 hydrog WATSON-CRICK W DC 213 M N4 DC 13 1_555 X DG 211 N O6 DG 11 1_555 hydrog WATSON-CRICK W DC 213 M O2 DC 13 1_555 X DG 211 N N2 DG 11 1_555 hydrog WATSON-CRICK W DA 214 M N1 DA 14 1_555 X DT 210 N N3 DT 10 1_555 hydrog WATSON-CRICK W DA 214 M N6 DA 14 1_555 X DT 210 N O4 DT 10 1_555 hydrog WATSON-CRICK W DA 215 M N1 DA 15 1_555 X DT 209 N N3 DT 9 1_555 hydrog WATSON-CRICK W DA 215 M N6 DA 15 1_555 X DT 209 N O4 DT 9 1_555 hydrog WATSON-CRICK W DT 216 M N3 DT 16 1_555 X DA 208 N N1 DA 8 1_555 hydrog WATSON-CRICK W DT 216 M O4 DT 16 1_555 X DA 208 N N6 DA 8 1_555 hydrog WATSON-CRICK W DG 217 M N1 DG 17 1_555 X DC 207 N N3 DC 7 1_555 hydrog WATSON-CRICK W DG 217 M N2 DG 17 1_555 X DC 207 N O2 DC 7 1_555 hydrog WATSON-CRICK W DG 217 M O6 DG 17 1_555 X DC 207 N N4 DC 7 1_555 hydrog WATSON-CRICK W DC 218 M N3 DC 18 1_555 X DG 206 N N1 DG 6 1_555 hydrog WATSON-CRICK W DC 218 M N4 DC 18 1_555 X DG 206 N O6 DG 6 1_555 hydrog WATSON-CRICK W DC 218 M O2 DC 18 1_555 X DG 206 N N2 DG 6 1_555 hydrog WATSON-CRICK W DA 219 M N1 DA 19 1_555 X DT 205 N N3 DT 5 1_555 hydrog WATSON-CRICK W DA 219 M N6 DA 19 1_555 X DT 205 N O4 DT 5 1_555 hydrog WATSON-CRICK W DA 220 M N1 DA 20 1_555 X DT 204 N N3 DT 4 1_555 hydrog WATSON-CRICK W DA 220 M N6 DA 20 1_555 X DT 204 N O4 DT 4 1_555 hydrog WATSON-CRICK W DT 221 M N3 DT 21 1_555 X DA 203 N N1 DA 3 1_555 hydrog WATSON-CRICK W DT 221 M O4 DT 21 1_555 X DA 203 N N6 DA 3 1_555 hydrog WATSON-CRICK W DC 222 M N3 DC 22 1_555 X DG 202 N N1 DG 2 1_555 hydrog WATSON-CRICK W DC 222 M N4 DC 22 1_555 X DG 202 N O6 DG 2 1_555 hydrog WATSON-CRICK W DC 222 M O2 DC 22 1_555 X DG 202 N N2 DG 2 1_555 hydrog DG-DA MISPAIR A A Y DG 206 O N2 DG 6 1_555 Y DA 220 O N1 DA 20 1_555 hydrog WATSON-CRICK A A Y DT 207 O N3 DT 7 1_555 Y DA 219 O N1 DA 19 1_555 hydrog WATSON-CRICK A A Y DT 207 O O4 DT 7 1_555 Y DA 219 O N6 DA 19 1_555 hydrog WATSON-CRICK A A Y DG 208 O N1 DG 8 1_555 Y DC 218 O N3 DC 18 1_555 hydrog WATSON-CRICK A A Y DG 208 O N2 DG 8 1_555 Y DC 218 O O2 DC 18 1_555 hydrog WATSON-CRICK A A Y DG 208 O O6 DG 8 1_555 Y DC 218 O N4 DC 18 1_555 hydrog WATSON-CRICK A A Y DC 209 O N3 DC 9 1_555 Y DG 217 O N1 DG 17 1_555 hydrog WATSON-CRICK A A Y DC 209 O N4 DC 9 1_555 Y DG 217 O O6 DG 17 1_555 hydrog WATSON-CRICK A A Y DC 209 O O2 DC 9 1_555 Y DG 217 O N2 DG 17 1_555 hydrog WATSON-CRICK A A Y DA 210 O N1 DA 10 1_555 Y DT 216 O N3 DT 16 1_555 hydrog WATSON-CRICK A A Y DA 210 O N6 DA 10 1_555 Y DT 216 O O4 DT 16 1_555 hydrog DC-DA MISPAIR A A Y DC 211 O N3 DC 11 1_555 Y DA 215 O N6 DA 15 1_555 hydrog WATSON-CRICK A A Y DT 212 O N3 DT 12 1_555 Y DA 214 O N1 DA 14 1_555 hydrog WATSON-CRICK A A Y DT 212 O O4 DT 12 1_555 Y DA 214 O N6 DA 14 1_555 hydrog DA-DT PAIR B B Z DA 201 P N1 DA 1 1_555 Z DT 221 P N3 DT 21 1_555 hydrog TYPE_4_PAIR B B Z DG 202 P N2 DG 2 1_555 Z DG 220 P N3 DG 20 1_555 hydrog TYPE_4_PAIR B B Z DG 202 P N3 DG 2 1_555 Z DG 220 P N2 DG 20 1_555 hydrog DA-DG MISPAIR B B Z DA 203 P N3 DA 3 1_555 Z DG 219 P N2 DG 19 1_555 hydrog WATSON-CRICK B B Z DT 205 P N3 DT 5 1_555 Z DA 217 P N1 DA 17 1_555 hydrog WATSON-CRICK B B Z DT 205 P O4 DT 5 1_555 Z DA 217 P N6 DA 17 1_555 hydrog WATSON-CRICK B B Z DG 206 P N1 DG 6 1_555 Z DC 216 P N3 DC 16 1_555 hydrog WATSON-CRICK B B Z DG 206 P N2 DG 6 1_555 Z DC 216 P O2 DC 16 1_555 hydrog WATSON-CRICK B B Z DG 206 P O6 DG 6 1_555 Z DC 216 P N4 DC 16 1_555 hydrog WATSON-CRICK B B Z DC 207 P N3 DC 7 1_555 Z DG 215 P N1 DG 15 1_555 hydrog WATSON-CRICK B B Z DC 207 P N4 DC 7 1_555 Z DG 215 P O6 DG 15 1_555 hydrog WATSON-CRICK B B Z DC 207 P O2 DC 7 1_555 Z DG 215 P N2 DG 15 1_555 hydrog WATSON-CRICK B B Z DA 208 P N1 DA 8 1_555 Z DT 214 P N3 DT 14 1_555 hydrog WATSON-CRICK B B Z DA 208 P N6 DA 8 1_555 Z DT 214 P O4 DT 14 1_555 hydrog DT-DG MISPAIR B B Z DT 209 P O2 DT 9 1_555 Z DG 213 P N2 DG 13 1_555 hydrog WATSON-CRICK B B Z DT 210 P N3 DT 10 1_555 Z DA 212 P N1 DA 12 1_555 hydrog WATSON-CRICK B B Z DT 210 P O4 DT 10 1_555 Z DA 212 P N6 DA 12 1_555 GENE REGULATION/DNA TRANSCRIPTIONAL REPRESSOR, DNA-BINDING PROTEIN, PLASMID, PROTEIN-DNA COMPLEX, GENE REGULATION/DNA, GENE REGULATION-DNA complex REPA_STRPN UNP 1 P13920 1EA4 PDB 2 1EA4 1EA4 PDB 3 1EA4 1 45 1EA4 1 45 P13920 A 1 1 45 1 45 1EA4 1 45 P13920 B 1 1 45 1 45 1EA4 1 45 P13920 D 1 1 45 1 45 1EA4 1 45 P13920 E 1 1 45 1 45 1EA4 1 45 P13920 F 1 1 45 1 45 1EA4 1 45 P13920 G 1 1 45 1 45 1EA4 1 45 P13920 H 1 1 45 1 45 1EA4 1 45 P13920 J 1 1 45 1 45 1EA4 1 45 P13920 K 1 1 45 1 45 1EA4 1 45 P13920 L 1 1 45 201 222 1EA4 201 222 1EA4 U 2 1 22 201 222 1EA4 201 222 1EA4 V 3 1 22 201 222 1EA4 201 222 1EA4 W 2 1 22 201 222 1EA4 201 222 1EA4 X 3 1 22 202 222 1EA4 202 222 1EA4 Y 2 2 22 201 222 1EA4 201 222 1EA4 Z 3 1 22 2 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 3 A LYS 3 A SER 10 A SER 10 B LYS 2 B LYS 2 B LEU 9 B LEU 9 D LYS 3 C LYS 3 D SER 10 C SER 10 E LYS 2 D LYS 2 E LEU 9 D LEU 9 F LYS 2 E LYS 2 F LEU 9 E LEU 9 G LYS 3 F LYS 3 G SER 10 F SER 10 H LYS 3 G LYS 3 H SER 10 G SER 10 J LYS 2 H LYS 2 J LEU 9 H LEU 9 K ARG 4 I ARG 4 K THR 8 I THR 8 L ARG 4 J ARG 4 L THR 8 J THR 8 18 P 21 21 2