0.024149
0.000000
0.002087
0.000000
0.012811
0.000000
0.000000
0.000000
0.012250
0.00000
0.00000
0.00000
CIS PROLINE - PRO A 8
CIS PROLINE - PRO A 141
CIS PROLINE - PRO B 158
VAL B 194 - PRO B 195 OMEGA = 230.46 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Zhou, G.W.
Guo, J.
Huang, W.
Scanlan, T.S.
Fletterick, R.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
94.94
90.00
41.410
78.060
81.940
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C15 H22 N O6 P
343.312
PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
265
1059
1064
8066444
Crystal structure of a catalytic antibody with a serine protease active site.
1994
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
116
6062
Kinetic and Mechanistic Characterization of an Efficient Hydrolytic Antibody: Evidence for the Formation of an Acyl Intermediate
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
23528.225
IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN)
1
nat
polymer
22886.492
IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN)
1
nat
polymer
343.312
PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE
1
syn
non-polymer
no
no
DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEG
GDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLN
SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEG
GDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLN
SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
A
polypeptide(L)
no
no
EVQLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAY
MQLNSLTSEDSAVYFCKRSYYGSSYVDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTW
NSGGLSSSVHTFPALLQSGLYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
EVQLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAY
MQLNSLTSEDSAVYFCKRSYYGSSYVDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTW
NSGGLSSSVHTFPALLQSGLYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
house mouse
Mus
sample
10090
Mus musculus
2.84
56.71
repository
Initial release
Version format compliance
Version format compliance
1
0
1994-12-20
1
1
2008-03-24
1
2
2011-07-13
Y
1994-08-10
REL
HEP
PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE
THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM
THE DNA SEQUENCE OF GUO ET AL., 1994, LISTED IN REFERENCE
1 ABOVE.
HEP
1
3
HEP
HEP
222
B
ASP
1
n
1
ASP
1
A
ILE
2
n
2
ILE
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
LYS
18
n
18
LYS
18
A
VAL
19
n
19
VAL
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
CYS
23
n
23
CYS
23
A
LYS
24
n
24
LYS
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
ASP
28
n
28
ASP
28
A
ILE
29
n
29
ILE
29
A
LYS
30
n
30
LYS
30
A
LYS
31
n
31
LYS
31
A
TYR
32
n
32
TYR
32
A
ILE
33
n
33
ILE
33
A
GLY
34
n
34
GLY
34
A
TRP
35
n
35
TRP
35
A
TYR
36
n
36
TYR
36
A
GLN
37
n
37
GLN
37
A
HIS
38
n
38
HIS
38
A
LYS
39
n
39
LYS
39
A
PRO
40
n
40
PRO
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
ILE
48
n
48
ILE
48
A
HIS
49
n
49
HIS
49
A
TYR
50
n
50
TYR
50
A
THR
51
n
51
THR
51
A
SER
52
n
52
SER
52
A
THR
53
n
53
THR
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
PRO
56
n
56
PRO
56
A
GLY
57
n
57
GLY
57
A
ILE
58
n
58
ILE
58
A
PRO
59
n
59
PRO
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
PHE
62
n
62
PHE
62
A
ARG
63
n
63
ARG
63
A
GLY
64
n
64
GLY
64
A
SER
65
n
65
SER
65
A
GLY
66
n
66
GLY
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
ASP
70
n
70
ASP
70
A
TYR
71
n
71
TYR
71
A
SER
72
n
72
SER
72
A
PHE
73
n
73
PHE
73
A
SER
74
n
74
SER
74
A
ILE
75
n
75
ILE
75
A
SER
76
n
76
SER
76
A
ASN
77
n
77
ASN
77
A
LEU
78
n
78
LEU
78
A
GLU
79
n
79
GLU
79
A
GLY
80
n
80
GLY
80
A
GLY
81
n
81
GLY
81
A
ASP
82
n
82
ASP
82
A
ILE
83
n
83
ILE
83
A
ALA
84
n
84
ALA
84
A
THR
85
n
85
THR
85
A
TYR
86
n
86
TYR
86
A
TYR
87
n
87
TYR
87
A
CYS
88
n
88
CYS
88
A
LEU
89
n
89
LEU
89
A
GLN
90
n
90
GLN
90
A
TYR
91
n
91
TYR
91
A
TYR
92
n
92
TYR
92
A
ASN
93
n
93
ASN
93
A
LEU
94
n
94
LEU
94
A
ARG
96
n
95
ARG
96
A
THR
97
n
96
THR
97
A
PHE
98
n
97
PHE
98
A
GLY
99
n
98
GLY
99
A
GLY
100
n
99
GLY
100
A
GLY
101
n
100
GLY
101
A
THR
102
n
101
THR
102
A
LYS
103
n
102
LYS
103
A
LEU
104
n
103
LEU
104
A
GLU
105
n
104
GLU
105
A
ILE
106
n
105
ILE
106
A
LYS
107
n
106
LYS
107
A
ARG
108
n
107
ARG
108
A
ALA
109
n
108
ALA
109
A
ASP
110
n
109
ASP
110
A
ALA
111
n
110
ALA
111
A
ALA
112
n
111
ALA
112
A
PRO
113
n
112
PRO
113
A
THR
114
n
113
THR
114
A
VAL
115
n
114
VAL
115
A
SER
116
n
115
SER
116
A
ILE
117
n
116
ILE
117
A
PHE
118
n
117
PHE
118
A
PRO
119
n
118
PRO
119
A
PRO
120
n
119
PRO
120
A
SER
121
n
120
SER
121
A
SER
122
n
121
SER
122
A
GLU
123
n
122
GLU
123
A
GLN
124
n
123
GLN
124
A
LEU
125
n
124
LEU
125
A
THR
126
n
125
THR
126
A
SER
127
n
126
SER
127
A
GLY
128
n
127
GLY
128
A
GLY
129
n
128
GLY
129
A
ALA
130
n
129
ALA
130
A
SER
131
n
130
SER
131
A
VAL
132
n
131
VAL
132
A
VAL
133
n
132
VAL
133
A
CYS
134
n
133
CYS
134
A
PHE
135
n
134
PHE
135
A
LEU
136
n
135
LEU
136
A
ASN
137
n
136
ASN
137
A
ASN
138
n
137
ASN
138
A
PHE
139
n
138
PHE
139
A
TYR
140
n
139
TYR
140
A
PRO
141
n
140
PRO
141
A
LYS
142
n
141
LYS
142
A
ASP
143
n
142
ASP
143
A
ILE
144
n
143
ILE
144
A
ASN
145
n
144
ASN
145
A
VAL
146
n
145
VAL
146
A
LYS
147
n
146
LYS
147
A
TRP
148
n
147
TRP
148
A
LYS
149
n
148
LYS
149
A
ILE
150
n
149
ILE
150
A
ASP
151
n
150
ASP
151
A
GLY
152
n
151
GLY
152
A
SER
153
n
152
SER
153
A
GLU
154
n
153
GLU
154
A
ARG
155
n
154
ARG
155
A
ALA
156
n
155
ALA
156
A
GLN
157
n
156
GLN
157
A
GLY
158
n
157
GLY
158
A
VAL
159
n
158
VAL
159
A
LEU
160
n
159
LEU
160
A
ASN
161
n
160
ASN
161
A
SER
162
n
161
SER
162
A
TRP
163
n
162
TRP
163
A
THR
164
n
163
THR
164
A
ASP
165
n
164
ASP
165
A
GLN
166
n
165
GLN
166
A
ASP
167
n
166
ASP
167
A
SER
168
n
167
SER
168
A
LYS
169
n
168
LYS
169
A
ASP
170
n
169
ASP
170
A
SER
171
n
170
SER
171
A
THR
172
n
171
THR
172
A
TYR
173
n
172
TYR
173
A
SER
174
n
173
SER
174
A
MET
175
n
174
MET
175
A
SER
176
n
175
SER
176
A
SER
177
n
176
SER
177
A
THR
178
n
177
THR
178
A
LEU
179
n
178
LEU
179
A
THR
180
n
179
THR
180
A
LEU
181
n
180
LEU
181
A
THR
182
n
181
THR
182
A
LYS
183
n
182
LYS
183
A
ASP
184
n
183
ASP
184
A
GLU
185
n
184
GLU
185
A
TYR
186
n
185
TYR
186
A
GLU
187
n
186
GLU
187
A
ARG
188
n
187
ARG
188
A
HIS
189
n
188
HIS
189
A
ASN
190
n
189
ASN
190
A
SER
191
n
190
SER
191
A
TYR
192
n
191
TYR
192
A
THR
193
n
192
THR
193
A
CYS
194
n
193
CYS
194
A
GLU
195
n
194
GLU
195
A
ALA
196
n
195
ALA
196
A
THR
197
n
196
THR
197
A
HIS
198
n
197
HIS
198
A
LYS
199
n
198
LYS
199
A
THR
200
n
199
THR
200
A
SER
201
n
200
SER
201
A
THR
202
n
201
THR
202
A
SER
203
n
202
SER
203
A
PRO
204
n
203
PRO
204
A
ILE
205
n
204
ILE
205
A
VAL
206
n
205
VAL
206
A
LYS
207
n
206
LYS
207
A
SER
208
n
207
SER
208
A
PHE
209
n
208
PHE
209
A
ASN
210
n
209
ASN
210
A
ARG
211
n
210
ARG
211
A
ASN
212
n
211
ASN
212
A
GLU
213
n
212
GLU
213
A
CYS
214
n
213
CYS
214
A
GLU
1
n
1
GLU
1
B
VAL
2
n
2
VAL
2
B
GLN
3
n
3
GLN
3
B
LEU
4
n
4
LEU
4
B
GLN
5
n
5
GLN
5
B
GLU
6
n
6
GLU
6
B
SER
7
n
7
SER
7
B
GLY
8
n
8
GLY
8
B
THR
9
n
9
THR
9
B
GLU
10
n
10
GLU
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
LYS
13
n
13
LYS
13
B
PRO
14
n
14
PRO
14
B
GLY
15
n
15
GLY
15
B
ALA
16
n
16
ALA
16
B
SER
17
n
17
SER
17
B
VAL
18
n
18
VAL
18
B
LYS
19
n
19
LYS
19
B
ILE
20
n
20
ILE
20
B
SER
21
n
21
SER
21
B
CYS
22
n
22
CYS
22
B
LYS
23
n
23
LYS
23
B
ALA
24
n
24
ALA
24
B
SER
25
n
25
SER
25
B
GLY
26
n
26
GLY
26
B
TYR
27
n
27
TYR
27
B
ILE
28
n
28
ILE
28
B
SER
29
n
29
SER
29
B
THR
30
n
30
THR
30
B
ASP
31
n
31
ASP
31
B
HIS
32
n
32
HIS
32
B
ALA
33
n
33
ALA
33
B
ILE
34
n
34
ILE
34
B
HIS
35
n
35
HIS
35
B
TRP
36
n
36
TRP
36
B
VAL
37
n
37
VAL
37
B
LYS
38
n
38
LYS
38
B
GLN
39
n
39
GLN
39
B
ARG
40
n
40
ARG
40
B
PRO
41
n
41
PRO
41
B
GLU
42
n
42
GLU
42
B
GLN
43
n
43
GLN
43
B
GLY
44
n
44
GLY
44
B
LEU
45
n
45
LEU
45
B
GLU
46
n
46
GLU
46
B
TRP
47
n
47
TRP
47
B
ILE
48
n
48
ILE
48
B
GLY
49
n
49
GLY
49
B
TYR
50
n
50
TYR
50
B
ILE
51
n
51
ILE
51
B
SER
52
n
52
SER
52
B
PRO
53
n
53
PRO
53
B
GLY
54
n
54
GLY
54
B
ASN
55
n
55
ASN
55
B
GLY
56
n
56
GLY
56
B
ASP
57
n
57
ASP
57
B
ILE
58
n
58
ILE
58
B
LYS
59
n
59
LYS
59
B
TYR
60
n
60
TYR
60
B
ASN
61
n
61
ASN
61
B
GLU
62
n
62
GLU
62
B
LYS
63
n
63
LYS
63
B
PHE
64
n
64
PHE
64
B
LYS
65
n
65
LYS
65
B
VAL
66
n
66
VAL
66
B
LYS
67
n
67
LYS
67
B
ALA
68
n
68
ALA
68
B
THR
69
n
69
THR
69
B
LEU
70
n
70
LEU
70
B
THR
71
n
71
THR
71
B
ALA
72
n
72
ALA
72
B
ASP
73
n
73
ASP
73
B
GLN
74
n
74
GLN
74
B
SER
75
n
75
SER
75
B
SER
76
n
76
SER
76
B
SER
77
n
77
SER
77
B
THR
78
n
78
THR
78
B
ALA
79
n
79
ALA
79
B
TYR
80
n
80
TYR
80
B
MET
81
n
81
MET
81
B
GLN
82
n
82
GLN
82
B
LEU
83
n
83
LEU
83
B
ASN
84
n
84
ASN
84
B
SER
85
n
85
SER
85
B
LEU
86
n
86
LEU
86
B
THR
87
n
87
THR
87
B
SER
88
n
88
SER
88
B
GLU
89
n
89
GLU
89
B
ASP
90
n
90
ASP
90
B
SER
91
n
91
SER
91
B
ALA
92
n
92
ALA
92
B
VAL
93
n
93
VAL
93
B
TYR
94
n
94
TYR
94
B
PHE
95
n
95
PHE
95
B
CYS
96
n
96
CYS
96
B
LYS
97
n
97
LYS
97
B
ARG
98
n
98
ARG
98
B
SER
99
n
99
SER
99
B
TYR
100
n
100
TYR
100
B
TYR
101
n
101
TYR
101
B
GLY
102
n
102
GLY
102
B
SER
103
n
103
SER
103
B
SER
104
n
104
SER
104
B
TYR
110
n
105
TYR
110
B
VAL
111
n
106
VAL
111
B
ASP
112
n
107
ASP
112
B
TYR
113
n
108
TYR
113
B
TRP
114
n
109
TRP
114
B
GLY
115
n
110
GLY
115
B
GLN
116
n
111
GLN
116
B
GLY
117
n
112
GLY
117
B
THR
118
n
113
THR
118
B
THR
119
n
114
THR
119
B
LEU
120
n
115
LEU
120
B
THR
121
n
116
THR
121
B
VAL
122
n
117
VAL
122
B
SER
123
n
118
SER
123
B
SER
124
n
119
SER
124
B
ALA
125
n
120
ALA
125
B
LYS
126
n
121
LYS
126
B
THR
127
n
122
THR
127
B
THR
128
n
123
THR
128
B
PRO
129
n
124
PRO
129
B
PRO
130
n
125
PRO
130
B
SER
131
n
126
SER
131
B
VAL
132
n
127
VAL
132
B
TYR
133
n
128
TYR
133
B
PRO
134
n
129
PRO
134
B
LEU
135
n
130
LEU
135
B
ALA
136
n
131
ALA
136
B
PRO
137
n
132
PRO
137
B
GLY
138
n
133
GLY
138
B
CYS
139
n
134
CYS
139
B
GLY
140
n
135
GLY
140
B
ASP
141
n
136
ASP
141
B
THR
142
n
137
THR
142
B
THR
143
n
138
THR
143
B
GLY
144
n
139
GLY
144
B
SER
145
n
140
SER
145
B
SER
146
n
141
SER
146
B
VAL
147
n
142
VAL
147
B
THR
148
n
143
THR
148
B
LEU
149
n
144
LEU
149
B
GLY
150
n
145
GLY
150
B
CYS
151
n
146
CYS
151
B
LEU
152
n
147
LEU
152
B
VAL
153
n
148
VAL
153
B
LYS
154
n
149
LYS
154
B
GLY
155
n
150
GLY
155
B
TYR
156
n
151
TYR
156
B
PHE
157
n
152
PHE
157
B
PRO
158
n
153
PRO
158
B
GLU
159
n
154
GLU
159
B
SER
160
n
155
SER
160
B
VAL
161
n
156
VAL
161
B
THR
162
n
157
THR
162
B
VAL
163
n
158
VAL
163
B
THR
164
n
159
THR
164
B
TRP
165
n
160
TRP
165
B
ASN
166
n
161
ASN
166
B
SER
167
n
162
SER
167
B
GLY
168
n
163
GLY
168
B
GLY
169
n
164
GLY
169
B
LEU
170
n
165
LEU
170
B
SER
171
n
166
SER
171
B
SER
172
n
167
SER
172
B
SER
173
n
168
SER
173
B
VAL
174
n
169
VAL
174
B
HIS
175
n
170
HIS
175
B
THR
176
n
171
THR
176
B
PHE
177
n
172
PHE
177
B
PRO
178
n
173
PRO
178
B
ALA
179
n
174
ALA
179
B
LEU
180
n
175
LEU
180
B
LEU
181
n
176
LEU
181
B
GLN
182
n
177
GLN
182
B
SER
183
n
178
SER
183
B
GLY
184
n
179
GLY
184
B
LEU
185
n
180
LEU
185
B
TYR
186
n
181
TYR
186
B
THR
187
n
182
THR
187
B
MET
188
n
183
MET
188
B
SER
189
n
184
SER
189
B
SER
190
n
185
SER
190
B
SER
191
n
186
SER
191
B
VAL
192
n
187
VAL
192
B
THR
193
n
188
THR
193
B
VAL
194
n
189
VAL
194
B
PRO
195
n
190
PRO
195
B
GLY
196
n
191
GLY
196
B
GLY
197
n
192
GLY
197
B
GLY
198
n
193
GLY
198
B
TRP
199
n
194
TRP
199
B
PRO
200
n
195
PRO
200
B
SER
201
n
196
SER
201
B
ALA
202
n
197
ALA
202
B
THR
203
n
198
THR
203
B
VAL
204
n
199
VAL
204
B
THR
205
n
200
THR
205
B
CYS
206
n
201
CYS
206
B
SER
207
n
202
SER
207
B
VAL
208
n
203
VAL
208
B
ALA
209
n
204
ALA
209
B
HIS
210
n
205
HIS
210
B
PRO
211
n
206
PRO
211
B
ALA
212
n
207
ALA
212
B
SER
213
n
208
SER
213
B
SER
214
n
209
SER
214
B
THR
215
n
210
THR
215
B
THR
216
n
211
THR
216
B
VAL
217
n
212
VAL
217
B
ASP
218
n
213
ASP
218
B
LYS
219
n
214
LYS
219
B
LYS
220
n
215
LYS
220
B
LEU
221
n
216
LEU
221
B
author_and_software_defined_assembly
PISA
2
dimeric
4390
-22
19530
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
7
A
O
SER
7
A
N
THR
22
A
N
THR
22
A
N
CYS
23
A
N
CYS
23
A
O
TYR
71
A
O
TYR
71
A
N
SER
74
A
N
SER
74
A
O
ARG
63
A
O
ARG
63
A
O
THR
53
A
O
THR
53
A
N
HIS
49
A
N
HIS
49
A
N
LEU
47
A
N
LEU
47
A
O
TRP
35
A
O
TRP
35
A
O
HIS
38
A
O
HIS
38
A
N
THR
85
A
N
THR
85
A
N
GLN
90
A
N
GLN
90
A
O
THR
97
A
O
THR
96
A
O
THR
53
A
O
THR
53
A
N
HIS
49
A
N
HIS
49
A
N
LEU
47
A
N
LEU
47
A
O
TRP
35
A
O
TRP
35
A
O
HIS
38
A
O
HIS
38
A
N
THR
85
A
N
THR
85
A
N
TYR
86
A
N
TYR
86
A
O
THR
102
A
O
THR
101
A
N
GLU
105
A
N
GLU
104
A
O
LEU
11
A
O
LEU
11
A
O
PHE
118
A
O
PHE
117
A
N
VAL
133
A
N
VAL
132
A
N
PHE
139
A
N
PHE
138
A
O
TYR
173
A
O
TYR
172
A
O
THR
178
A
O
THR
177
A
N
LEU
160
A
N
LEU
159
A
N
ARG
155
A
N
ARG
154
A
O
TRP
148
A
O
TRP
147
A
O
LYS
149
A
O
LYS
148
A
N
THR
193
A
N
THR
192
A
O
ALA
196
A
O
ALA
195
A
N
ILE
205
A
N
ILE
204
B
O
GLN
5
B
O
GLN
5
B
N
LYS
23
B
N
LYS
23
B
O
CYS
22
B
O
CYS
22
B
N
ALA
79
B
N
ALA
79
B
N
GLN
82
B
N
GLN
82
B
O
THR
69
B
O
THR
69
B
N
GLU
10
B
N
GLU
10
B
O
THR
119
B
O
THR
114
B
N
LEU
120
B
N
LEU
115
B
O
ALA
92
B
O
ALA
92
B
O
LYS
97
B
O
LYS
97
B
N
HIS
35
B
N
HIS
35
B
N
LYS
38
B
N
LYS
38
B
O
GLU
46
B
O
GLU
46
B
N
TYR
50
B
N
TYR
50
B
O
LYS
59
B
O
LYS
59
B
N
LEU
135
B
N
LEU
130
B
O
GLY
150
B
O
GLY
145
B
O
TYR
156
B
O
TYR
151
B
N
TYR
186
B
N
TYR
181
B
O
SER
191
B
O
SER
186
B
N
HIS
175
B
N
HIS
170
B
N
THR
164
B
N
THR
159
B
O
SER
207
B
O
SER
202
B
N
HIS
210
B
N
HIS
205
B
O
THR
215
B
O
THR
210
1
B
B
VAL
PRO
194
195
-129.54
1
-10.71
1.70
111.00
100.29
A
A
A
CB
CG
CD2
LEU
LEU
LEU
4
4
4
N
1
6.44
0.80
106.30
112.74
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
35
35
35
N
1
-5.98
0.80
107.30
101.32
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
35
35
35
N
1
4.31
0.50
120.30
124.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
61
61
61
N
1
-3.51
0.50
120.30
116.79
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
N
1
-4.19
0.60
121.00
116.81
A
A
A
CB
CG
CD2
TYR
TYR
TYR
91
91
91
N
1
3.54
0.50
120.30
123.84
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
96
96
96
N
1
7.62
0.80
106.30
113.92
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
148
148
148
N
1
-6.04
1.00
110.10
104.06
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
148
148
148
N
1
-6.20
0.80
107.30
101.10
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
148
148
148
N
1
6.76
0.80
106.30
113.06
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
163
163
163
N
1
-6.02
0.80
107.30
101.28
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
163
163
163
N
1
5.89
0.80
106.30
112.19
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
36
36
36
N
1
-5.94
0.80
107.30
101.36
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
36
36
36
N
1
5.58
0.90
133.90
139.48
B
B
B
CG
CD2
CE3
TRP
TRP
TRP
36
36
36
N
1
6.07
0.80
106.30
112.37
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
47
47
47
N
1
-5.63
0.80
107.30
101.67
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
47
47
47
N
1
3.36
0.50
120.30
123.66
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
98
98
98
N
1
6.31
0.80
106.30
112.61
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
114
114
114
N
1
-6.04
0.80
107.30
101.26
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
114
114
114
N
1
-4.46
0.60
121.00
116.54
B
B
B
CB
CG
CD2
TYR
TYR
TYR
133
133
133
N
1
6.65
0.80
106.30
112.95
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
165
165
165
N
1
-6.36
0.80
107.30
100.94
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
165
165
165
N
1
5.78
0.90
133.90
139.68
B
B
B
CG
CD2
CE3
TRP
TRP
TRP
165
165
165
N
1
5.88
0.80
106.30
112.18
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
199
199
199
N
1
-5.72
0.80
107.30
101.58
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
199
199
199
N
1
A
A
NE2
CD2
HIS
HIS
49
49
-0.069
0.011
1.373
1.304
N
1
A
A
NE2
CD2
HIS
HIS
198
198
-0.074
0.011
1.373
1.299
N
1
B
B
NE2
CD2
HIS
HIS
32
32
-0.074
0.011
1.373
1.299
N
1
B
B
NE2
CD2
HIS
HIS
35
35
-0.066
0.011
1.373
1.307
N
1
B
B
NE2
CD2
HIS
HIS
175
175
-0.071
0.011
1.373
1.302
N
1
B
B
NE2
CD2
HIS
HIS
210
210
-0.067
0.011
1.373
1.306
N
1
A
SER
10
61.95
123.40
1
A
THR
51
63.82
-56.85
1
A
LEU
54
-46.99
160.86
1
A
SER
67
-146.42
-69.29
1
A
TYR
91
-150.18
34.03
1
A
ASN
93
-162.75
100.54
1
A
LEU
94
62.61
-148.04
1
A
PRO
119
-49.28
160.84
1
A
SER
121
-57.84
18.20
1
A
SER
122
59.82
-65.42
1
A
ASN
138
54.91
96.07
1
A
ILE
150
-91.59
-117.65
1
A
SER
168
-39.82
-39.72
1
A
ASP
170
-169.66
-29.55
1
A
ARG
188
-89.82
32.69
1
A
HIS
189
-148.23
-17.43
1
A
ASN
190
59.89
-59.54
1
A
ASN
212
58.41
-58.87
1
B
THR
9
-38.82
124.80
1
B
GLU
42
77.18
-59.21
1
B
PRO
53
-57.06
-9.01
1
B
ALA
92
175.72
175.50
1
B
PRO
137
-59.68
-2.46
1
B
CYS
139
-93.34
41.79
1
B
ASP
141
65.35
-61.78
1
B
THR
142
57.27
15.17
1
B
THR
143
-85.16
45.63
1
B
SER
145
68.41
-153.80
1
B
SER
146
-105.24
-162.99
1
B
SER
160
146.96
98.45
1
B
SER
172
-12.26
-71.09
1
B
PRO
200
-57.38
97.11
1
B
SER
201
-157.39
-97.83
1
B
THR
205
63.10
124.25
1
B
PRO
211
-58.37
-82.01
1
B
ALA
212
-63.39
94.05
1
B
SER
213
160.83
-63.85
1
B
SER
214
97.20
96.46
0.186
0.186
2.4
6.0
13531
1
2.0
2.4
6.0
0
3287
23
0
3264
0.011
3.078
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
17E8 COMPLEXED WITH PHENYL [1-(1-N-SUCCINYLAMINO)PENTYL] PHOSPHONATE
CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE
1
N
N
2
N
N
3
N
N
A
SER
122
A
SER
121
HELX_P
A
GLY
128
A
GLY
127
1
1
7
A
LYS
183
A
LYS
182
HELX_P
A
ARG
188
A
ARG
187
1
2
6
B
ILE
28
B
ILE
28
HELX_P
B
HIS
32
B
HIS
32
5
3
5
B
GLU
62
B
GLU
62
HELX_P
B
LYS
65
B
LYS
65
5
4
4
B
GLN
74
B
GLN
74
HELX_P
B
SER
76
B
SER
76
5
5
3
B
THR
87
B
THR
87
HELX_P
B
SER
91
B
SER
91
5
6
5
B
SER
167
B
SER
162
HELX_P
B
GLY
169
B
GLY
164
5
7
3
disulf
2.023
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
88
1_555
disulf
2.016
A
CYS
134
A
SG
CYS
133
1_555
A
CYS
194
A
SG
CYS
193
1_555
disulf
2.022
A
CYS
214
A
SG
CYS
213
1_555
B
CYS
139
B
SG
CYS
134
1_555
disulf
2.015
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
96
B
SG
CYS
96
1_555
disulf
2.013
B
CYS
151
B
SG
CYS
146
1_555
B
CYS
206
B
SG
CYS
201
1_555
CATALYTIC ANTIBODY
CATALYTIC ANTIBODY
A
SER
7
A
SER
7
1
A
PRO
8
A
PRO
8
-19.96
A
TYR
140
A
TYR
139
1
A
PRO
141
A
PRO
140
1.57
B
PHE
157
B
PHE
152
1
B
PRO
158
B
PRO
153
-12.86
AAG43420
GB
1
1
12002896
ELEMTQSPSSLSASLGGKVTIACKANQDINKYIAWYQHKPGKGPRLLIHYTSTLQPGIPSRFSGSGSGRDYSFSISNLEP
EDIATYYCLQYDNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN
SWTDQDSKDSTYSMSSTLTLTKDEYGRHNSYTCEATHKTSTSPIVKSFNRNEC
1EAP
PDB
2
1EAP
3
213
1EAP
3
214
12002896
A
1
3
213
1
221
1EAP
1
221
1EAP
B
2
1
216
1
MET
CONFLICT
LEU
4
1EAP
A
12002896
GB
4
4
1
ALA
CONFLICT
THR
22
1EAP
A
12002896
GB
22
22
1
ASN
CONFLICT
SER
26
1EAP
A
12002896
GB
26
26
1
ASN
CONFLICT
LYS
30
1EAP
A
12002896
GB
30
30
1
ALA
CONFLICT
GLY
34
1EAP
A
12002896
GB
34
34
1
GLN
CONFLICT
LEU
55
1EAP
A
12002896
GB
55
55
1
SER
CONFLICT
ARG
63
1EAP
A
12002896
GB
63
63
1
PRO
CONFLICT
GLY
80
1EAP
A
12002896
GB
80
80
1
GLU
CONFLICT
GLY
81
1EAP
A
12002896
GB
81
81
1
ASP
CONFLICT
TYR
92
1EAP
A
12002896
GB
92
92
1
GLN
CONFLICT
ALA
156
1EAP
A
12002896
GB
155
155
1
ASN
CONFLICT
GLN
157
1EAP
A
12002896
GB
156
156
1
GLY
CONFLICT
GLU
187
1EAP
A
12002896
GB
186
186
4
5
6
4
4
4
6
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
SER
7
A
SER
7
A
VAL
19
A
VAL
19
A
ALA
25
A
ALA
25
A
ASP
70
A
ASP
70
A
ILE
75
A
ILE
75
A
PHE
62
A
PHE
62
A
GLY
66
A
GLY
66
A
THR
53
A
THR
53
A
LEU
54
A
LEU
54
A
ARG
45
A
ARG
45
A
HIS
49
A
HIS
49
A
ILE
33
A
ILE
33
A
HIS
38
A
HIS
38
A
THR
85
A
THR
85
A
GLN
90
A
GLN
90
A
THR
97
A
THR
96
A
PHE
98
A
PHE
97
A
THR
53
A
THR
53
A
LEU
54
A
LEU
54
A
ARG
45
A
ARG
45
A
HIS
49
A
HIS
49
A
ILE
33
A
ILE
33
A
HIS
38
A
HIS
38
A
THR
85
A
THR
85
A
GLN
90
A
GLN
90
A
THR
102
A
THR
101
A
ILE
106
A
ILE
105
A
LEU
11
A
LEU
11
A
ALA
13
A
ALA
13
A
THR
114
A
THR
113
A
PHE
118
A
PHE
117
A
GLY
129
A
GLY
128
A
PHE
139
A
PHE
138
A
TYR
173
A
TYR
172
A
THR
182
A
THR
181
A
VAL
159
A
VAL
158
A
TRP
163
A
TRP
162
A
GLU
154
A
GLU
153
A
ARG
155
A
ARG
154
A
ASN
145
A
ASN
144
A
LYS
149
A
LYS
148
A
SER
191
A
SER
190
A
THR
197
A
THR
196
A
ILE
205
A
ILE
204
A
ASN
210
A
ASN
209
B
GLN
3
B
GLN
3
B
GLU
6
B
GLU
6
B
VAL
18
B
VAL
18
B
SER
25
B
SER
25
B
THR
78
B
THR
78
B
LEU
83
B
LEU
83
B
ALA
68
B
ALA
68
B
ASP
73
B
ASP
73
B
GLU
10
B
GLU
10
B
VAL
12
B
VAL
12
B
THR
118
B
THR
113
B
VAL
122
B
VAL
117
B
ALA
92
B
ALA
92
B
ARG
98
B
ARG
98
B
ILE
34
B
ILE
34
B
GLN
39
B
GLN
39
B
LEU
45
B
LEU
45
B
ILE
51
B
ILE
51
B
ILE
58
B
ILE
58
B
TYR
60
B
TYR
60
B
SER
131
B
SER
126
B
LEU
135
B
LEU
130
B
VAL
147
B
VAL
142
B
TYR
156
B
TYR
151
B
LEU
185
B
LEU
180
B
VAL
194
B
VAL
189
B
VAL
174
B
VAL
169
B
GLN
182
B
GLN
177
B
THR
162
B
THR
157
B
TRP
165
B
TRP
160
B
CYS
206
B
CYS
201
B
HIS
210
B
HIS
205
B
THR
215
B
THR
210
B
LYS
219
B
LYS
214
BINDING SITE FOR RESIDUE HEP B 222
Software
11
A
TYR
36
A
TYR
36
11
1_555
A
LEU
89
A
LEU
89
11
1_555
A
TYR
91
A
TYR
91
11
1_555
A
ARG
96
A
ARG
95
11
1_555
B
HIS
35
B
HIS
35
11
1_555
B
LYS
97
B
LYS
97
11
1_555
B
SER
99
B
SER
99
11
1_555
B
TYR
100
B
TYR
100
11
1_555
B
TYR
101
B
TYR
101
11
1_555
B
GLY
102
B
GLY
102
11
1_555
B
TRP
114
B
TRP
109
11
1_555
4
P 1 21 1