0.024149 0.000000 0.002087 0.000000 0.012811 0.000000 0.000000 0.000000 0.012250 0.00000 0.00000 0.00000 CIS PROLINE - PRO A 8 CIS PROLINE - PRO A 141 CIS PROLINE - PRO B 158 VAL B 194 - PRO B 195 OMEGA = 230.46 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION Zhou, G.W. Guo, J. Huang, W. Scanlan, T.S. Fletterick, R.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 94.94 90.00 41.410 78.060 81.940 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C15 H22 N O6 P 343.312 PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Science SCIEAS 0038 0036-8075 265 1059 1064 8066444 Crystal structure of a catalytic antibody with a serine protease active site. 1994 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 116 6062 Kinetic and Mechanistic Characterization of an Efficient Hydrolytic Antibody: Evidence for the Formation of an Acyl Intermediate 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23528.225 IGG2B-KAPPA 17E8 FAB (LIGHT CHAIN) 1 nat polymer 22886.492 IGG2B-KAPPA 17E8 FAB (HEAVY CHAIN) 1 nat polymer 343.312 PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE 1 syn non-polymer no no DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEG GDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLN SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEG GDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLN SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC A polypeptide(L) no no EVQLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAY MQLNSLTSEDSAVYFCKRSYYGSSYVDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTW NSGGLSSSVHTFPALLQSGLYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL EVQLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAY MQLNSLTSEDSAVYFCKRSYYGSSYVDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTW NSGGLSSSVHTFPALLQSGLYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 2.84 56.71 repository Initial release Version format compliance Version format compliance 1 0 1994-12-20 1 1 2008-03-24 1 2 2011-07-13 Y 1994-08-10 REL HEP PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DERIVED FROM THE DNA SEQUENCE OF GUO ET AL., 1994, LISTED IN REFERENCE 1 ABOVE. HEP 1 3 HEP HEP 222 B ASP 1 n 1 ASP 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A LEU 4 n 4 LEU 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A PRO 8 n 8 PRO 8 A SER 9 n 9 SER 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A ALA 13 n 13 ALA 13 A SER 14 n 14 SER 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A THR 22 n 22 THR 22 A CYS 23 n 23 CYS 23 A LYS 24 n 24 LYS 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A ASP 28 n 28 ASP 28 A ILE 29 n 29 ILE 29 A LYS 30 n 30 LYS 30 A LYS 31 n 31 LYS 31 A TYR 32 n 32 TYR 32 A ILE 33 n 33 ILE 33 A GLY 34 n 34 GLY 34 A TRP 35 n 35 TRP 35 A TYR 36 n 36 TYR 36 A GLN 37 n 37 GLN 37 A HIS 38 n 38 HIS 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A GLY 41 n 41 GLY 41 A LYS 42 n 42 LYS 42 A GLY 43 n 43 GLY 43 A PRO 44 n 44 PRO 44 A ARG 45 n 45 ARG 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A HIS 49 n 49 HIS 49 A TYR 50 n 50 TYR 50 A THR 51 n 51 THR 51 A SER 52 n 52 SER 52 A THR 53 n 53 THR 53 A LEU 54 n 54 LEU 54 A LEU 55 n 55 LEU 55 A PRO 56 n 56 PRO 56 A GLY 57 n 57 GLY 57 A ILE 58 n 58 ILE 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A ARG 63 n 63 ARG 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A SER 67 n 67 SER 67 A GLY 68 n 68 GLY 68 A ARG 69 n 69 ARG 69 A ASP 70 n 70 ASP 70 A TYR 71 n 71 TYR 71 A SER 72 n 72 SER 72 A PHE 73 n 73 PHE 73 A SER 74 n 74 SER 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A ASN 77 n 77 ASN 77 A LEU 78 n 78 LEU 78 A GLU 79 n 79 GLU 79 A GLY 80 n 80 GLY 80 A GLY 81 n 81 GLY 81 A ASP 82 n 82 ASP 82 A ILE 83 n 83 ILE 83 A ALA 84 n 84 ALA 84 A THR 85 n 85 THR 85 A TYR 86 n 86 TYR 86 A TYR 87 n 87 TYR 87 A CYS 88 n 88 CYS 88 A LEU 89 n 89 LEU 89 A GLN 90 n 90 GLN 90 A TYR 91 n 91 TYR 91 A TYR 92 n 92 TYR 92 A ASN 93 n 93 ASN 93 A LEU 94 n 94 LEU 94 A ARG 96 n 95 ARG 96 A THR 97 n 96 THR 97 A PHE 98 n 97 PHE 98 A GLY 99 n 98 GLY 99 A GLY 100 n 99 GLY 100 A GLY 101 n 100 GLY 101 A THR 102 n 101 THR 102 A LYS 103 n 102 LYS 103 A LEU 104 n 103 LEU 104 A GLU 105 n 104 GLU 105 A ILE 106 n 105 ILE 106 A LYS 107 n 106 LYS 107 A ARG 108 n 107 ARG 108 A ALA 109 n 108 ALA 109 A ASP 110 n 109 ASP 110 A ALA 111 n 110 ALA 111 A ALA 112 n 111 ALA 112 A PRO 113 n 112 PRO 113 A THR 114 n 113 THR 114 A VAL 115 n 114 VAL 115 A SER 116 n 115 SER 116 A ILE 117 n 116 ILE 117 A PHE 118 n 117 PHE 118 A PRO 119 n 118 PRO 119 A PRO 120 n 119 PRO 120 A SER 121 n 120 SER 121 A SER 122 n 121 SER 122 A GLU 123 n 122 GLU 123 A GLN 124 n 123 GLN 124 A LEU 125 n 124 LEU 125 A THR 126 n 125 THR 126 A SER 127 n 126 SER 127 A GLY 128 n 127 GLY 128 A GLY 129 n 128 GLY 129 A ALA 130 n 129 ALA 130 A SER 131 n 130 SER 131 A VAL 132 n 131 VAL 132 A VAL 133 n 132 VAL 133 A CYS 134 n 133 CYS 134 A PHE 135 n 134 PHE 135 A LEU 136 n 135 LEU 136 A ASN 137 n 136 ASN 137 A ASN 138 n 137 ASN 138 A PHE 139 n 138 PHE 139 A TYR 140 n 139 TYR 140 A PRO 141 n 140 PRO 141 A LYS 142 n 141 LYS 142 A ASP 143 n 142 ASP 143 A ILE 144 n 143 ILE 144 A ASN 145 n 144 ASN 145 A VAL 146 n 145 VAL 146 A LYS 147 n 146 LYS 147 A TRP 148 n 147 TRP 148 A LYS 149 n 148 LYS 149 A ILE 150 n 149 ILE 150 A ASP 151 n 150 ASP 151 A GLY 152 n 151 GLY 152 A SER 153 n 152 SER 153 A GLU 154 n 153 GLU 154 A ARG 155 n 154 ARG 155 A ALA 156 n 155 ALA 156 A GLN 157 n 156 GLN 157 A GLY 158 n 157 GLY 158 A VAL 159 n 158 VAL 159 A LEU 160 n 159 LEU 160 A ASN 161 n 160 ASN 161 A SER 162 n 161 SER 162 A TRP 163 n 162 TRP 163 A THR 164 n 163 THR 164 A ASP 165 n 164 ASP 165 A GLN 166 n 165 GLN 166 A ASP 167 n 166 ASP 167 A SER 168 n 167 SER 168 A LYS 169 n 168 LYS 169 A ASP 170 n 169 ASP 170 A SER 171 n 170 SER 171 A THR 172 n 171 THR 172 A TYR 173 n 172 TYR 173 A SER 174 n 173 SER 174 A MET 175 n 174 MET 175 A SER 176 n 175 SER 176 A SER 177 n 176 SER 177 A THR 178 n 177 THR 178 A LEU 179 n 178 LEU 179 A THR 180 n 179 THR 180 A LEU 181 n 180 LEU 181 A THR 182 n 181 THR 182 A LYS 183 n 182 LYS 183 A ASP 184 n 183 ASP 184 A GLU 185 n 184 GLU 185 A TYR 186 n 185 TYR 186 A GLU 187 n 186 GLU 187 A ARG 188 n 187 ARG 188 A HIS 189 n 188 HIS 189 A ASN 190 n 189 ASN 190 A SER 191 n 190 SER 191 A TYR 192 n 191 TYR 192 A THR 193 n 192 THR 193 A CYS 194 n 193 CYS 194 A GLU 195 n 194 GLU 195 A ALA 196 n 195 ALA 196 A THR 197 n 196 THR 197 A HIS 198 n 197 HIS 198 A LYS 199 n 198 LYS 199 A THR 200 n 199 THR 200 A SER 201 n 200 SER 201 A THR 202 n 201 THR 202 A SER 203 n 202 SER 203 A PRO 204 n 203 PRO 204 A ILE 205 n 204 ILE 205 A VAL 206 n 205 VAL 206 A LYS 207 n 206 LYS 207 A SER 208 n 207 SER 208 A PHE 209 n 208 PHE 209 A ASN 210 n 209 ASN 210 A ARG 211 n 210 ARG 211 A ASN 212 n 211 ASN 212 A GLU 213 n 212 GLU 213 A CYS 214 n 213 CYS 214 A GLU 1 n 1 GLU 1 B VAL 2 n 2 VAL 2 B GLN 3 n 3 GLN 3 B LEU 4 n 4 LEU 4 B GLN 5 n 5 GLN 5 B GLU 6 n 6 GLU 6 B SER 7 n 7 SER 7 B GLY 8 n 8 GLY 8 B THR 9 n 9 THR 9 B GLU 10 n 10 GLU 10 B LEU 11 n 11 LEU 11 B VAL 12 n 12 VAL 12 B LYS 13 n 13 LYS 13 B PRO 14 n 14 PRO 14 B GLY 15 n 15 GLY 15 B ALA 16 n 16 ALA 16 B SER 17 n 17 SER 17 B VAL 18 n 18 VAL 18 B LYS 19 n 19 LYS 19 B ILE 20 n 20 ILE 20 B SER 21 n 21 SER 21 B CYS 22 n 22 CYS 22 B LYS 23 n 23 LYS 23 B ALA 24 n 24 ALA 24 B SER 25 n 25 SER 25 B GLY 26 n 26 GLY 26 B TYR 27 n 27 TYR 27 B ILE 28 n 28 ILE 28 B SER 29 n 29 SER 29 B THR 30 n 30 THR 30 B ASP 31 n 31 ASP 31 B HIS 32 n 32 HIS 32 B ALA 33 n 33 ALA 33 B ILE 34 n 34 ILE 34 B HIS 35 n 35 HIS 35 B TRP 36 n 36 TRP 36 B VAL 37 n 37 VAL 37 B LYS 38 n 38 LYS 38 B GLN 39 n 39 GLN 39 B ARG 40 n 40 ARG 40 B PRO 41 n 41 PRO 41 B GLU 42 n 42 GLU 42 B GLN 43 n 43 GLN 43 B GLY 44 n 44 GLY 44 B LEU 45 n 45 LEU 45 B GLU 46 n 46 GLU 46 B TRP 47 n 47 TRP 47 B ILE 48 n 48 ILE 48 B GLY 49 n 49 GLY 49 B TYR 50 n 50 TYR 50 B ILE 51 n 51 ILE 51 B SER 52 n 52 SER 52 B PRO 53 n 53 PRO 53 B GLY 54 n 54 GLY 54 B ASN 55 n 55 ASN 55 B GLY 56 n 56 GLY 56 B ASP 57 n 57 ASP 57 B ILE 58 n 58 ILE 58 B LYS 59 n 59 LYS 59 B TYR 60 n 60 TYR 60 B ASN 61 n 61 ASN 61 B GLU 62 n 62 GLU 62 B LYS 63 n 63 LYS 63 B PHE 64 n 64 PHE 64 B LYS 65 n 65 LYS 65 B VAL 66 n 66 VAL 66 B LYS 67 n 67 LYS 67 B ALA 68 n 68 ALA 68 B THR 69 n 69 THR 69 B LEU 70 n 70 LEU 70 B THR 71 n 71 THR 71 B ALA 72 n 72 ALA 72 B ASP 73 n 73 ASP 73 B GLN 74 n 74 GLN 74 B SER 75 n 75 SER 75 B SER 76 n 76 SER 76 B SER 77 n 77 SER 77 B THR 78 n 78 THR 78 B ALA 79 n 79 ALA 79 B TYR 80 n 80 TYR 80 B MET 81 n 81 MET 81 B GLN 82 n 82 GLN 82 B LEU 83 n 83 LEU 83 B ASN 84 n 84 ASN 84 B SER 85 n 85 SER 85 B LEU 86 n 86 LEU 86 B THR 87 n 87 THR 87 B SER 88 n 88 SER 88 B GLU 89 n 89 GLU 89 B ASP 90 n 90 ASP 90 B SER 91 n 91 SER 91 B ALA 92 n 92 ALA 92 B VAL 93 n 93 VAL 93 B TYR 94 n 94 TYR 94 B PHE 95 n 95 PHE 95 B CYS 96 n 96 CYS 96 B LYS 97 n 97 LYS 97 B ARG 98 n 98 ARG 98 B SER 99 n 99 SER 99 B TYR 100 n 100 TYR 100 B TYR 101 n 101 TYR 101 B GLY 102 n 102 GLY 102 B SER 103 n 103 SER 103 B SER 104 n 104 SER 104 B TYR 110 n 105 TYR 110 B VAL 111 n 106 VAL 111 B ASP 112 n 107 ASP 112 B TYR 113 n 108 TYR 113 B TRP 114 n 109 TRP 114 B GLY 115 n 110 GLY 115 B GLN 116 n 111 GLN 116 B GLY 117 n 112 GLY 117 B THR 118 n 113 THR 118 B THR 119 n 114 THR 119 B LEU 120 n 115 LEU 120 B THR 121 n 116 THR 121 B VAL 122 n 117 VAL 122 B SER 123 n 118 SER 123 B SER 124 n 119 SER 124 B ALA 125 n 120 ALA 125 B LYS 126 n 121 LYS 126 B THR 127 n 122 THR 127 B THR 128 n 123 THR 128 B PRO 129 n 124 PRO 129 B PRO 130 n 125 PRO 130 B SER 131 n 126 SER 131 B VAL 132 n 127 VAL 132 B TYR 133 n 128 TYR 133 B PRO 134 n 129 PRO 134 B LEU 135 n 130 LEU 135 B ALA 136 n 131 ALA 136 B PRO 137 n 132 PRO 137 B GLY 138 n 133 GLY 138 B CYS 139 n 134 CYS 139 B GLY 140 n 135 GLY 140 B ASP 141 n 136 ASP 141 B THR 142 n 137 THR 142 B THR 143 n 138 THR 143 B GLY 144 n 139 GLY 144 B SER 145 n 140 SER 145 B SER 146 n 141 SER 146 B VAL 147 n 142 VAL 147 B THR 148 n 143 THR 148 B LEU 149 n 144 LEU 149 B GLY 150 n 145 GLY 150 B CYS 151 n 146 CYS 151 B LEU 152 n 147 LEU 152 B VAL 153 n 148 VAL 153 B LYS 154 n 149 LYS 154 B GLY 155 n 150 GLY 155 B TYR 156 n 151 TYR 156 B PHE 157 n 152 PHE 157 B PRO 158 n 153 PRO 158 B GLU 159 n 154 GLU 159 B SER 160 n 155 SER 160 B VAL 161 n 156 VAL 161 B THR 162 n 157 THR 162 B VAL 163 n 158 VAL 163 B THR 164 n 159 THR 164 B TRP 165 n 160 TRP 165 B ASN 166 n 161 ASN 166 B SER 167 n 162 SER 167 B GLY 168 n 163 GLY 168 B GLY 169 n 164 GLY 169 B LEU 170 n 165 LEU 170 B SER 171 n 166 SER 171 B SER 172 n 167 SER 172 B SER 173 n 168 SER 173 B VAL 174 n 169 VAL 174 B HIS 175 n 170 HIS 175 B THR 176 n 171 THR 176 B PHE 177 n 172 PHE 177 B PRO 178 n 173 PRO 178 B ALA 179 n 174 ALA 179 B LEU 180 n 175 LEU 180 B LEU 181 n 176 LEU 181 B GLN 182 n 177 GLN 182 B SER 183 n 178 SER 183 B GLY 184 n 179 GLY 184 B LEU 185 n 180 LEU 185 B TYR 186 n 181 TYR 186 B THR 187 n 182 THR 187 B MET 188 n 183 MET 188 B SER 189 n 184 SER 189 B SER 190 n 185 SER 190 B SER 191 n 186 SER 191 B VAL 192 n 187 VAL 192 B THR 193 n 188 THR 193 B VAL 194 n 189 VAL 194 B PRO 195 n 190 PRO 195 B GLY 196 n 191 GLY 196 B GLY 197 n 192 GLY 197 B GLY 198 n 193 GLY 198 B TRP 199 n 194 TRP 199 B PRO 200 n 195 PRO 200 B SER 201 n 196 SER 201 B ALA 202 n 197 ALA 202 B THR 203 n 198 THR 203 B VAL 204 n 199 VAL 204 B THR 205 n 200 THR 205 B CYS 206 n 201 CYS 206 B SER 207 n 202 SER 207 B VAL 208 n 203 VAL 208 B ALA 209 n 204 ALA 209 B HIS 210 n 205 HIS 210 B PRO 211 n 206 PRO 211 B ALA 212 n 207 ALA 212 B SER 213 n 208 SER 213 B SER 214 n 209 SER 214 B THR 215 n 210 THR 215 B THR 216 n 211 THR 216 B VAL 217 n 212 VAL 217 B ASP 218 n 213 ASP 218 B LYS 219 n 214 LYS 219 B LYS 220 n 215 LYS 220 B LEU 221 n 216 LEU 221 B author_and_software_defined_assembly PISA 2 dimeric 4390 -22 19530 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 7 A O SER 7 A N THR 22 A N THR 22 A N CYS 23 A N CYS 23 A O TYR 71 A O TYR 71 A N SER 74 A N SER 74 A O ARG 63 A O ARG 63 A O THR 53 A O THR 53 A N HIS 49 A N HIS 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A O HIS 38 A O HIS 38 A N THR 85 A N THR 85 A N GLN 90 A N GLN 90 A O THR 97 A O THR 96 A O THR 53 A O THR 53 A N HIS 49 A N HIS 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A O HIS 38 A O HIS 38 A N THR 85 A N THR 85 A N TYR 86 A N TYR 86 A O THR 102 A O THR 101 A N GLU 105 A N GLU 104 A O LEU 11 A O LEU 11 A O PHE 118 A O PHE 117 A N VAL 133 A N VAL 132 A N PHE 139 A N PHE 138 A O TYR 173 A O TYR 172 A O THR 178 A O THR 177 A N LEU 160 A N LEU 159 A N ARG 155 A N ARG 154 A O TRP 148 A O TRP 147 A O LYS 149 A O LYS 148 A N THR 193 A N THR 192 A O ALA 196 A O ALA 195 A N ILE 205 A N ILE 204 B O GLN 5 B O GLN 5 B N LYS 23 B N LYS 23 B O CYS 22 B O CYS 22 B N ALA 79 B N ALA 79 B N GLN 82 B N GLN 82 B O THR 69 B O THR 69 B N GLU 10 B N GLU 10 B O THR 119 B O THR 114 B N LEU 120 B N LEU 115 B O ALA 92 B O ALA 92 B O LYS 97 B O LYS 97 B N HIS 35 B N HIS 35 B N LYS 38 B N LYS 38 B O GLU 46 B O GLU 46 B N TYR 50 B N TYR 50 B O LYS 59 B O LYS 59 B N LEU 135 B N LEU 130 B O GLY 150 B O GLY 145 B O TYR 156 B O TYR 151 B N TYR 186 B N TYR 181 B O SER 191 B O SER 186 B N HIS 175 B N HIS 170 B N THR 164 B N THR 159 B O SER 207 B O SER 202 B N HIS 210 B N HIS 205 B O THR 215 B O THR 210 1 B B VAL PRO 194 195 -129.54 1 -10.71 1.70 111.00 100.29 A A A CB CG CD2 LEU LEU LEU 4 4 4 N 1 6.44 0.80 106.30 112.74 A A A CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 -5.98 0.80 107.30 101.32 A A A CE2 CD2 CG TRP TRP TRP 35 35 35 N 1 4.31 0.50 120.30 124.61 A A A NE CZ NH1 ARG ARG ARG 61 61 61 N 1 -3.51 0.50 120.30 116.79 A A A NE CZ NH2 ARG ARG ARG 61 61 61 N 1 -4.19 0.60 121.00 116.81 A A A CB CG CD2 TYR TYR TYR 91 91 91 N 1 3.54 0.50 120.30 123.84 A A A NE CZ NH1 ARG ARG ARG 96 96 96 N 1 7.62 0.80 106.30 113.92 A A A CD1 CG CD2 TRP TRP TRP 148 148 148 N 1 -6.04 1.00 110.10 104.06 A A A CG CD1 NE1 TRP TRP TRP 148 148 148 N 1 -6.20 0.80 107.30 101.10 A A A CE2 CD2 CG TRP TRP TRP 148 148 148 N 1 6.76 0.80 106.30 113.06 A A A CD1 CG CD2 TRP TRP TRP 163 163 163 N 1 -6.02 0.80 107.30 101.28 A A A CE2 CD2 CG TRP TRP TRP 163 163 163 N 1 5.89 0.80 106.30 112.19 B B B CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -5.94 0.80 107.30 101.36 B B B CE2 CD2 CG TRP TRP TRP 36 36 36 N 1 5.58 0.90 133.90 139.48 B B B CG CD2 CE3 TRP TRP TRP 36 36 36 N 1 6.07 0.80 106.30 112.37 B B B CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -5.63 0.80 107.30 101.67 B B B CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 3.36 0.50 120.30 123.66 B B B NE CZ NH1 ARG ARG ARG 98 98 98 N 1 6.31 0.80 106.30 112.61 B B B CD1 CG CD2 TRP TRP TRP 114 114 114 N 1 -6.04 0.80 107.30 101.26 B B B CE2 CD2 CG TRP TRP TRP 114 114 114 N 1 -4.46 0.60 121.00 116.54 B B B CB CG CD2 TYR TYR TYR 133 133 133 N 1 6.65 0.80 106.30 112.95 B B B CD1 CG CD2 TRP TRP TRP 165 165 165 N 1 -6.36 0.80 107.30 100.94 B B B CE2 CD2 CG TRP TRP TRP 165 165 165 N 1 5.78 0.90 133.90 139.68 B B B CG CD2 CE3 TRP TRP TRP 165 165 165 N 1 5.88 0.80 106.30 112.18 B B B CD1 CG CD2 TRP TRP TRP 199 199 199 N 1 -5.72 0.80 107.30 101.58 B B B CE2 CD2 CG TRP TRP TRP 199 199 199 N 1 A A NE2 CD2 HIS HIS 49 49 -0.069 0.011 1.373 1.304 N 1 A A NE2 CD2 HIS HIS 198 198 -0.074 0.011 1.373 1.299 N 1 B B NE2 CD2 HIS HIS 32 32 -0.074 0.011 1.373 1.299 N 1 B B NE2 CD2 HIS HIS 35 35 -0.066 0.011 1.373 1.307 N 1 B B NE2 CD2 HIS HIS 175 175 -0.071 0.011 1.373 1.302 N 1 B B NE2 CD2 HIS HIS 210 210 -0.067 0.011 1.373 1.306 N 1 A SER 10 61.95 123.40 1 A THR 51 63.82 -56.85 1 A LEU 54 -46.99 160.86 1 A SER 67 -146.42 -69.29 1 A TYR 91 -150.18 34.03 1 A ASN 93 -162.75 100.54 1 A LEU 94 62.61 -148.04 1 A PRO 119 -49.28 160.84 1 A SER 121 -57.84 18.20 1 A SER 122 59.82 -65.42 1 A ASN 138 54.91 96.07 1 A ILE 150 -91.59 -117.65 1 A SER 168 -39.82 -39.72 1 A ASP 170 -169.66 -29.55 1 A ARG 188 -89.82 32.69 1 A HIS 189 -148.23 -17.43 1 A ASN 190 59.89 -59.54 1 A ASN 212 58.41 -58.87 1 B THR 9 -38.82 124.80 1 B GLU 42 77.18 -59.21 1 B PRO 53 -57.06 -9.01 1 B ALA 92 175.72 175.50 1 B PRO 137 -59.68 -2.46 1 B CYS 139 -93.34 41.79 1 B ASP 141 65.35 -61.78 1 B THR 142 57.27 15.17 1 B THR 143 -85.16 45.63 1 B SER 145 68.41 -153.80 1 B SER 146 -105.24 -162.99 1 B SER 160 146.96 98.45 1 B SER 172 -12.26 -71.09 1 B PRO 200 -57.38 97.11 1 B SER 201 -157.39 -97.83 1 B THR 205 63.10 124.25 1 B PRO 211 -58.37 -82.01 1 B ALA 212 -63.39 94.05 1 B SER 213 160.83 -63.85 1 B SER 214 97.20 96.46 0.186 0.186 2.4 6.0 13531 1 2.0 2.4 6.0 0 3287 23 0 3264 0.011 3.078 model building X-PLOR refinement X-PLOR phasing X-PLOR 17E8 COMPLEXED WITH PHENYL [1-(1-N-SUCCINYLAMINO)PENTYL] PHOSPHONATE CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE 1 N N 2 N N 3 N N A SER 122 A SER 121 HELX_P A GLY 128 A GLY 127 1 1 7 A LYS 183 A LYS 182 HELX_P A ARG 188 A ARG 187 1 2 6 B ILE 28 B ILE 28 HELX_P B HIS 32 B HIS 32 5 3 5 B GLU 62 B GLU 62 HELX_P B LYS 65 B LYS 65 5 4 4 B GLN 74 B GLN 74 HELX_P B SER 76 B SER 76 5 5 3 B THR 87 B THR 87 HELX_P B SER 91 B SER 91 5 6 5 B SER 167 B SER 162 HELX_P B GLY 169 B GLY 164 5 7 3 disulf 2.023 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.016 A CYS 134 A SG CYS 133 1_555 A CYS 194 A SG CYS 193 1_555 disulf 2.022 A CYS 214 A SG CYS 213 1_555 B CYS 139 B SG CYS 134 1_555 disulf 2.015 B CYS 22 B SG CYS 22 1_555 B CYS 96 B SG CYS 96 1_555 disulf 2.013 B CYS 151 B SG CYS 146 1_555 B CYS 206 B SG CYS 201 1_555 CATALYTIC ANTIBODY CATALYTIC ANTIBODY A SER 7 A SER 7 1 A PRO 8 A PRO 8 -19.96 A TYR 140 A TYR 139 1 A PRO 141 A PRO 140 1.57 B PHE 157 B PHE 152 1 B PRO 158 B PRO 153 -12.86 AAG43420 GB 1 1 12002896 ELEMTQSPSSLSASLGGKVTIACKANQDINKYIAWYQHKPGKGPRLLIHYTSTLQPGIPSRFSGSGSGRDYSFSISNLEP EDIATYYCLQYDNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN SWTDQDSKDSTYSMSSTLTLTKDEYGRHNSYTCEATHKTSTSPIVKSFNRNEC 1EAP PDB 2 1EAP 3 213 1EAP 3 214 12002896 A 1 3 213 1 221 1EAP 1 221 1EAP B 2 1 216 1 MET CONFLICT LEU 4 1EAP A 12002896 GB 4 4 1 ALA CONFLICT THR 22 1EAP A 12002896 GB 22 22 1 ASN CONFLICT SER 26 1EAP A 12002896 GB 26 26 1 ASN CONFLICT LYS 30 1EAP A 12002896 GB 30 30 1 ALA CONFLICT GLY 34 1EAP A 12002896 GB 34 34 1 GLN CONFLICT LEU 55 1EAP A 12002896 GB 55 55 1 SER CONFLICT ARG 63 1EAP A 12002896 GB 63 63 1 PRO CONFLICT GLY 80 1EAP A 12002896 GB 80 80 1 GLU CONFLICT GLY 81 1EAP A 12002896 GB 81 81 1 ASP CONFLICT TYR 92 1EAP A 12002896 GB 92 92 1 GLN CONFLICT ALA 156 1EAP A 12002896 GB 155 155 1 ASN CONFLICT GLN 157 1EAP A 12002896 GB 156 156 1 GLY CONFLICT GLU 187 1EAP A 12002896 GB 186 186 4 5 6 4 4 4 6 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 4 A LEU 4 A SER 7 A SER 7 A VAL 19 A VAL 19 A ALA 25 A ALA 25 A ASP 70 A ASP 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A GLY 66 A GLY 66 A THR 53 A THR 53 A LEU 54 A LEU 54 A ARG 45 A ARG 45 A HIS 49 A HIS 49 A ILE 33 A ILE 33 A HIS 38 A HIS 38 A THR 85 A THR 85 A GLN 90 A GLN 90 A THR 97 A THR 96 A PHE 98 A PHE 97 A THR 53 A THR 53 A LEU 54 A LEU 54 A ARG 45 A ARG 45 A HIS 49 A HIS 49 A ILE 33 A ILE 33 A HIS 38 A HIS 38 A THR 85 A THR 85 A GLN 90 A GLN 90 A THR 102 A THR 101 A ILE 106 A ILE 105 A LEU 11 A LEU 11 A ALA 13 A ALA 13 A THR 114 A THR 113 A PHE 118 A PHE 117 A GLY 129 A GLY 128 A PHE 139 A PHE 138 A TYR 173 A TYR 172 A THR 182 A THR 181 A VAL 159 A VAL 158 A TRP 163 A TRP 162 A GLU 154 A GLU 153 A ARG 155 A ARG 154 A ASN 145 A ASN 144 A LYS 149 A LYS 148 A SER 191 A SER 190 A THR 197 A THR 196 A ILE 205 A ILE 204 A ASN 210 A ASN 209 B GLN 3 B GLN 3 B GLU 6 B GLU 6 B VAL 18 B VAL 18 B SER 25 B SER 25 B THR 78 B THR 78 B LEU 83 B LEU 83 B ALA 68 B ALA 68 B ASP 73 B ASP 73 B GLU 10 B GLU 10 B VAL 12 B VAL 12 B THR 118 B THR 113 B VAL 122 B VAL 117 B ALA 92 B ALA 92 B ARG 98 B ARG 98 B ILE 34 B ILE 34 B GLN 39 B GLN 39 B LEU 45 B LEU 45 B ILE 51 B ILE 51 B ILE 58 B ILE 58 B TYR 60 B TYR 60 B SER 131 B SER 126 B LEU 135 B LEU 130 B VAL 147 B VAL 142 B TYR 156 B TYR 151 B LEU 185 B LEU 180 B VAL 194 B VAL 189 B VAL 174 B VAL 169 B GLN 182 B GLN 177 B THR 162 B THR 157 B TRP 165 B TRP 160 B CYS 206 B CYS 201 B HIS 210 B HIS 205 B THR 215 B THR 210 B LYS 219 B LYS 214 BINDING SITE FOR RESIDUE HEP B 222 Software 11 A TYR 36 A TYR 36 11 1_555 A LEU 89 A LEU 89 11 1_555 A TYR 91 A TYR 91 11 1_555 A ARG 96 A ARG 95 11 1_555 B HIS 35 B HIS 35 11 1_555 B LYS 97 B LYS 97 11 1_555 B SER 99 B SER 99 11 1_555 B TYR 100 B TYR 100 11 1_555 B TYR 101 B TYR 101 11 1_555 B GLY 102 B GLY 102 11 1_555 B TRP 114 B TRP 109 11 1_555 4 P 1 21 1