1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Peterson, R.D.
Feigon, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
264
863
877
10.1006/jmbi.1996.0683
9000617
Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide.
1996
10.2210/pdb1ebq/pdb
pdb_00001ebq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9362.595
HIV-1 REV RESPONSIVE ELEMENT RNA
1
syn
polymer
no
no
GGUGGGCGCAGCUUCGGCUGCGGUACACC
GGUGGGCGCAGCUUCGGCUGCGGUACACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-4.567
1
19
A
1
A
29
-2.029
A_G1:C29_A
1
-4.217
-1.018
0.050
-0.453
-0.344
1
19
A
2
A
28
-2.037
A_G2:C28_A
2
-4.998
-0.977
0.026
-0.429
0.452
1
20
A
3
A
27
-1.526
A_U3:A27_A
3
-9.438
0.014
0.121
-0.111
-4.288
1
19
A
4
A
26
-3.024
A_G4:C26_A
4
-13.462
-0.073
0.145
-0.148
1.853
8
A
5
A
25
-18.152
A_G5:A25_A
5
-5.427
-0.083
0.226
1.467
-6.254
3
A
6
A
23
-175.383
A_G6:G23_A
6
3.224
1.212
-0.167
1.661
5.313
1
19
A
7
A
22
-0.843
A_C7:G22_A
7
-5.155
-0.436
0.073
-0.090
-0.647
1
19
A
8
A
21
-1.521
A_G8:C21_A
8
-4.576
-0.422
0.011
-0.174
0.073
1
19
A
9
A
20
-0.745
A_C9:G20_A
9
-6.078
0.777
-0.174
-0.319
7.662
1
20
A
10
A
19
0.565
A_A10:U19_A
10
0.872
0.126
0.213
-0.089
-4.620
1
19
A
11
A
18
-0.894
A_G11:C18_A
11
-0.048
-0.206
-0.463
-0.130
-1.618
1
19
A
12
A
17
-1.781
A_C12:G17_A
12
5.668
0.992
-0.243
-0.461
-1.794
2
A
13
A
16
-107.297
A_U13:G16_A
13
-7.048
0.719
0.166
-4.630
2.755
37.017
A
A
1
2
24.036
A
A
29
28
3.338
14.826
-0.262
-0.842
AA_G1G2:C28C29_AA
1
-4.220
6.842
33.758
-3.276
-0.143
2.891
40.158
A
A
2
3
20.709
A
A
28
27
3.316
13.946
-0.103
-0.701
AA_G2U3:A27C28_AA
2
-0.748
1.111
37.745
-2.578
0.066
2.691
39.049
A
A
3
4
26.441
A
A
27
26
3.337
17.116
0.015
-0.778
AA_U3G4:C26A27_AA
3
0.610
-0.942
35.225
-3.172
0.050
3.222
36.455
A
A
4
5
5.341
A
A
26
25
3.300
3.335
-0.444
-0.381
AA_G4G5:A25C26_AA
4
2.183
-3.496
36.244
-1.071
1.012
3.039
99.837
A
A
5
6
11.426
A
A
25
23
3.288
17.407
-1.626
-0.335
AA_G5G6:G23A25_AA
5
13.359
-8.769
98.029
-0.488
1.269
3.650
-44.056
A
A
6
7
-21.727
A
A
23
22
4.236
15.961
0.486
0.956
AA_G6C7:G22G23_AA
6
-0.789
-1.075
-41.190
-3.155
0.555
2.193
39.056
A
A
7
8
38.967
A
A
22
21
3.473
24.267
0.184
-0.929
AA_C7G8:C21G22_AA
7
-1.031
1.655
30.819
-4.252
-0.397
2.972
41.022
A
A
8
9
20.648
A
A
21
20
3.383
14.192
0.136
-0.662
AA_G8C9:G20C21_AA
8
1.465
-2.131
38.562
-2.498
-0.034
2.139
31.551
A
A
9
10
26.865
A
A
20
19
3.001
14.103
0.119
-1.243
AA_C9A10:U19G20_AA
9
-2.100
4.000
28.219
-4.468
-0.545
2.362
31.603
A
A
10
11
32.746
A
A
19
18
3.847
16.931
-0.037
-1.714
AA_A10G11:C18U19_AA
10
1.730
-3.346
26.727
-6.390
0.399
2.561
39.982
A
A
11
12
27.486
A
A
18
17
3.404
18.147
-0.357
-1.165
AA_G11C12:G17C18_AA
11
-2.216
3.357
35.711
-3.723
0.276
2.765
99.731
A
A
12
13
6.856
A
A
17
16
2.867
10.469
0.606
-1.545
AA_C12U13:G16G17_AA
12
6.614
-4.332
99.163
-1.153
-0.306
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
ENSEMBLE OF 5 STRUCTURES
ENSEMBLE OF 5 STRUCTURES
Y
BNL
1997-03-20
REL
5
6.0
K
BRUNGER
refinement
X-PLOR
3.1
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
G
5
n
5
G
5
A
G
6
n
6
G
6
A
C
7
n
7
C
7
A
G
8
n
8
G
8
A
C
9
n
9
C
9
A
A
10
n
10
A
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
U
13
n
13
U
13
A
U
14
n
14
U
14
A
C
15
n
15
C
15
A
G
16
n
16
G
16
A
G
17
n
17
G
17
A
C
18
n
18
C
18
A
U
19
n
19
U
19
A
G
20
n
20
G
20
A
C
21
n
21
C
21
A
G
22
n
22
G
22
A
G
23
n
23
G
23
A
U
24
n
24
U
24
A
A
25
n
25
A
25
A
C
26
n
26
C
26
A
A
27
n
27
A
27
A
C
28
n
28
C
28
A
C
29
n
29
C
29
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
N3
C
G
15
16
1.37
1
A
A
O2
H1
U
G
13
16
1.38
1
A
A
HO2'
O5'
G
G
5
6
1.41
1
A
A
HO2'
O6
U
G
13
16
1.49
2
A
A
HO2'
O5'
G
G
5
6
1.35
2
A
A
HO2'
O6
U
G
13
16
1.49
2
A
A
O2
H1
U
G
13
16
1.50
2
A
A
HO2'
OP2
U
A
24
25
1.51
2
A
A
HO2'
O4'
C
G
15
16
1.58
2
A
A
HO2'
O5'
G
C
6
7
1.58
3
A
A
O2
H1
U
G
13
16
1.40
3
A
A
HO2'
O6
U
G
13
16
1.46
3
A
A
HO2'
O5'
G
C
6
7
1.52
3
A
A
HO2'
O4'
G
G
4
5
1.57
4
A
A
HO2'
O5'
U
C
14
15
1.47
4
A
A
HO2'
O5'
G
G
5
6
1.47
4
A
A
O2
H1
U
G
13
16
1.50
4
A
A
HO2'
N3
C
G
15
16
1.60
5
A
A
O2
H1
U
G
13
16
1.40
5
A
A
HO2'
O6
U
G
13
16
1.43
5
A
A
HO2'
O4'
C
G
15
16
1.57
1
-3.86
0.50
104.30
100.44
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
1
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
1
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
1
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
1
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
1
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
1
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
1
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
1
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
1
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
1
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
1
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
1
7.18
0.50
113.10
120.28
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
1
-3.90
0.40
106.40
102.50
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
1
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
1
6.91
0.50
113.10
120.01
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
1
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
1
-3.73
0.50
103.90
100.17
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
1
6.16
0.50
113.80
119.96
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
1
-3.34
0.40
105.80
102.46
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
1
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
1
6.78
0.50
113.10
119.88
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
1
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
1
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
1
7.10
0.50
113.10
120.20
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
1
-3.90
0.40
106.40
102.50
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
1
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
1
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
1
-3.86
0.40
106.40
102.54
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
1
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
1
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
1
-3.83
0.40
106.40
102.57
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
1
-4.07
0.50
104.30
100.23
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
1
6.86
0.50
113.10
119.96
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
1
-3.71
0.40
106.40
102.69
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
1
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N9
G
G
G
23
23
23
N
1
-3.91
0.50
104.30
100.39
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
1
7.18
0.50
113.10
120.28
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
1
-3.98
0.40
106.40
102.42
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
1
-3.71
0.50
103.90
100.19
A
A
A
C5
N7
C8
A
A
A
25
25
25
N
1
6.11
0.50
113.80
119.91
A
A
A
N7
C8
N9
A
A
A
25
25
25
N
1
-3.32
0.40
105.80
102.48
A
A
A
C8
N9
C4
A
A
A
25
25
25
N
1
-3.74
0.50
103.90
100.16
A
A
A
C5
N7
C8
A
A
A
27
27
27
N
1
6.21
0.50
113.80
120.01
A
A
A
N7
C8
N9
A
A
A
27
27
27
N
1
-3.30
0.40
105.80
102.50
A
A
A
C8
N9
C4
A
A
A
27
27
27
N
2
-3.91
0.50
104.30
100.39
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
2
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
2
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
2
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
2
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
2
-3.75
0.40
106.40
102.65
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
2
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
2
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
2
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
2
-3.86
0.50
104.30
100.44
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
2
7.06
0.50
113.10
120.16
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
2
-3.96
0.40
106.40
102.44
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
2
4.99
0.80
101.50
106.49
A
A
A
C3'
C2'
C1'
G
G
G
6
6
6
N
2
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
2
6.93
0.50
113.10
120.03
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
2
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
2
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
2
6.94
0.50
113.10
120.04
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
2
-3.77
0.40
106.40
102.63
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
2
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
2
6.30
0.50
113.80
120.10
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
2
-3.40
0.40
105.80
102.40
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
2
-4.06
0.50
104.30
100.24
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
2
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
2
-3.80
0.40
106.40
102.60
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
2
-4.06
0.50
104.30
100.24
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
2
7.22
0.50
113.10
120.32
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
2
-3.88
0.40
106.40
102.52
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
2
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
2
7.07
0.50
113.10
120.17
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
2
-3.93
0.40
106.40
102.47
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
2
-4.13
0.50
104.30
100.17
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
2
7.12
0.50
113.10
120.22
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
2
-3.74
0.40
106.40
102.66
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
2
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
2
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
2
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
2
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
2
6.90
0.50
113.10
120.00
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
2
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
2
-3.74
0.50
103.90
100.16
A
A
A
C5
N7
C8
A
A
A
25
25
25
N
2
6.07
0.50
113.80
119.87
A
A
A
N7
C8
N9
A
A
A
25
25
25
N
2
-3.26
0.40
105.80
102.54
A
A
A
C8
N9
C4
A
A
A
25
25
25
N
2
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
27
27
27
N
2
6.23
0.50
113.80
120.03
A
A
A
N7
C8
N9
A
A
A
27
27
27
N
2
-3.36
0.40
105.80
102.44
A
A
A
C8
N9
C4
A
A
A
27
27
27
N
3
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
3
6.97
0.50
113.10
120.07
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
3
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
3
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
3
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
3
-3.80
0.40
106.40
102.60
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
3
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
3
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
3
-3.80
0.40
106.40
102.60
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
3
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
3
6.90
0.50
113.10
120.00
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
3
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
3
4.31
0.70
108.50
112.81
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
3
-3.83
0.50
104.30
100.47
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
3
6.68
0.50
113.10
119.78
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
3
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
3
-4.06
0.50
104.30
100.24
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
3
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
3
-3.71
0.40
106.40
102.69
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
3
-3.75
0.50
103.90
100.15
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
3
6.32
0.50
113.80
120.12
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
3
-3.46
0.40
105.80
102.34
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
3
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
3
6.94
0.50
113.10
120.04
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
3
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
3
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
3
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
3
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
3
-3.88
0.50
104.30
100.42
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
3
6.91
0.50
113.10
120.01
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
3
-3.84
0.40
106.40
102.56
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
3
-4.15
0.50
104.30
100.15
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
3
7.12
0.50
113.10
120.22
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
3
-3.85
0.40
106.40
102.55
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
3
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
3
6.89
0.50
113.10
119.99
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
3
-3.74
0.40
106.40
102.66
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
3
-3.94
0.50
104.30
100.36
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
3
7.21
0.50
113.10
120.31
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
3
-3.91
0.40
106.40
102.49
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
3
-3.84
0.50
103.90
100.06
A
A
A
C5
N7
C8
A
A
A
25
25
25
N
3
6.36
0.50
113.80
120.16
A
A
A
N7
C8
N9
A
A
A
25
25
25
N
3
-3.39
0.40
105.80
102.41
A
A
A
C8
N9
C4
A
A
A
25
25
25
N
3
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
27
27
27
N
3
6.23
0.50
113.80
120.03
A
A
A
N7
C8
N9
A
A
A
27
27
27
N
3
-3.33
0.40
105.80
102.47
A
A
A
C8
N9
C4
A
A
A
27
27
27
N
4
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
4
7.03
0.50
113.10
120.13
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
4
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
4
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
4
6.96
0.50
113.10
120.06
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
4
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
4
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
4
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
4
-3.80
0.40
106.40
102.60
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
4
-3.92
0.50
104.30
100.38
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
4
7.12
0.50
113.10
120.22
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
4
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
4
-4.09
0.50
104.30
100.21
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
4
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
4
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
4
-4.00
0.50
104.30
100.30
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
4
6.89
0.50
113.10
119.99
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
4
-3.77
0.40
106.40
102.63
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
4
-3.80
0.50
103.90
100.10
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
4
6.20
0.50
113.80
120.00
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
4
-3.31
0.40
105.80
102.49
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
4
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
4
6.86
0.50
113.10
119.96
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
4
-3.77
0.40
106.40
102.63
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
4
-3.92
0.50
104.30
100.38
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
4
7.17
0.50
113.10
120.27
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
4
-3.92
0.40
106.40
102.48
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
4
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
4
7.07
0.50
113.10
120.17
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
4
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
4
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
4
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
4
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
4
-4.06
0.50
104.30
100.24
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
4
6.84
0.50
113.10
119.94
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
4
-3.64
0.40
106.40
102.76
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
4
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N9
G
G
G
23
23
23
N
4
-3.92
0.50
104.30
100.38
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
4
7.12
0.50
113.10
120.22
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
4
-3.94
0.40
106.40
102.46
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
4
-3.56
0.50
103.90
100.34
A
A
A
C5
N7
C8
A
A
A
25
25
25
N
4
6.24
0.50
113.80
120.04
A
A
A
N7
C8
N9
A
A
A
25
25
25
N
4
-3.46
0.40
105.80
102.34
A
A
A
C8
N9
C4
A
A
A
25
25
25
N
4
-3.79
0.50
103.90
100.11
A
A
A
C5
N7
C8
A
A
A
27
27
27
N
4
6.13
0.50
113.80
119.93
A
A
A
N7
C8
N9
A
A
A
27
27
27
N
4
-3.30
0.40
105.80
102.50
A
A
A
C8
N9
C4
A
A
A
27
27
27
N
5
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
5
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
5
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
5
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
5
6.95
0.50
113.10
120.05
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
5
-3.71
0.40
106.40
102.69
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
5
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
5
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
5
-3.88
0.40
106.40
102.52
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
5
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
5
7.05
0.50
113.10
120.15
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
5
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
5
4.87
0.80
101.50
106.37
A
A
A
C3'
C2'
C1'
G
G
G
6
6
6
N
5
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
5
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
5
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
5
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
5
6.93
0.50
113.10
120.03
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
5
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
5
-3.67
0.50
103.90
100.23
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
5
6.20
0.50
113.80
120.00
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
5
-3.33
0.40
105.80
102.47
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
5
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
5
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
5
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
5
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
5
7.14
0.50
113.10
120.24
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
5
-3.84
0.40
106.40
102.56
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
5
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
5
7.18
0.50
113.10
120.28
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
5
-3.95
0.40
106.40
102.45
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
5
-4.15
0.50
104.30
100.15
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
5
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
5
-3.72
0.40
106.40
102.68
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
5
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
5
6.97
0.50
113.10
120.07
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
5
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
5
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
5
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
5
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
5
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
25
25
25
N
5
6.22
0.50
113.80
120.02
A
A
A
N7
C8
N9
A
A
A
25
25
25
N
5
-3.31
0.40
105.80
102.49
A
A
A
C8
N9
C4
A
A
A
25
25
25
N
5
-3.76
0.50
103.90
100.14
A
A
A
C5
N7
C8
A
A
A
27
27
27
N
5
6.20
0.50
113.80
120.00
A
A
A
N7
C8
N9
A
A
A
27
27
27
N
5
-3.30
0.40
105.80
102.50
A
A
A
C8
N9
C4
A
A
A
27
27
27
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
29
A
N3
C
29
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
29
A
O2
C
29
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
29
A
N4
C
29
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
28
A
N3
C
28
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
28
A
O2
C
28
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
28
A
N4
C
28
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
27
A
N1
A
27
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
27
A
N6
A
27
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
26
A
N3
C
26
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
26
A
O2
C
26
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
26
A
N4
C
26
1_555
hydrog
TYPE_8_PAIR
A
G
5
A
N1
G
5
1_555
A
A
25
A
N1
A
25
1_555
hydrog
TYPE_8_PAIR
A
G
5
A
O6
G
5
1_555
A
A
25
A
N6
A
25
1_555
hydrog
TYPE_3_PAIR
A
G
6
A
N1
G
6
1_555
A
G
23
A
O6
G
23
1_555
hydrog
TYPE_3_PAIR
A
G
6
A
O6
G
6
1_555
A
G
23
A
N1
G
23
1_555
hydrog
WATSON-CRICK
A
C
7
A
N3
C
7
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
7
A
N4
C
7
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
7
A
O2
C
7
1_555
A
G
22
A
N2
G
22
1_555
hydrog
WATSON-CRICK
A
G
8
A
N1
G
8
1_555
A
C
21
A
N3
C
21
1_555
hydrog
WATSON-CRICK
A
G
8
A
N2
G
8
1_555
A
C
21
A
O2
C
21
1_555
hydrog
WATSON-CRICK
A
G
8
A
O6
G
8
1_555
A
C
21
A
N4
C
21
1_555
hydrog
WATSON-CRICK
A
C
9
A
N3
C
9
1_555
A
G
20
A
N1
G
20
1_555
hydrog
WATSON-CRICK
A
C
9
A
N4
C
9
1_555
A
G
20
A
O6
G
20
1_555
hydrog
WATSON-CRICK
A
C
9
A
O2
C
9
1_555
A
G
20
A
N2
G
20
1_555
hydrog
WATSON-CRICK
A
A
10
A
N1
A
10
1_555
A
U
19
A
N3
U
19
1_555
hydrog
WATSON-CRICK
A
A
10
A
N6
A
10
1_555
A
U
19
A
O4
U
19
1_555
hydrog
WATSON-CRICK
A
G
11
A
N1
G
11
1_555
A
C
18
A
N3
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
N2
G
11
1_555
A
C
18
A
O2
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
O6
G
11
1_555
A
C
18
A
N4
C
18
1_555
hydrog
WATSON-CRICK
A
C
12
A
N3
C
12
1_555
A
G
17
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
N4
C
12
1_555
A
G
17
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
O2
C
12
1_555
A
G
17
A
N2
G
17
1_555
hydrog
U-G MISPAIR
A
U
13
A
O2
U
13
1_555
A
G
16
A
N1
G
16
1_555
hydrog
U-G MISPAIR
A
U
13
A
O2
U
13
1_555
A
G
17
A
N1
G
17
1_555
RNA
RIBONUCLEIC ACID, RNA
1EBQ
PDB
1
1EBQ
1
29
1EBQ
1
29
1EBQ
A
1
1
29
1
P 1