1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Peterson, R.D.
Feigon, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
264
863
877
10.1006/jmbi.1996.0683
9000617
Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide.
1996
10.2210/pdb1ebr/pdb
pdb_00001ebr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9691.801
HIV-1 REV RESPONSIVE ELEMENT RNA
1
syn
polymer
no
no
GGUGGGCGCAGCUUCGGCUGACGGUACACC
GGUGGGCGCAGCUUCGGCUGACGGUACACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-0.388
1
19
A
1
A
30
-1.912
A_G1:C30_A
1
-2.454
-0.942
0.253
-0.444
-2.400
1
19
A
2
A
29
-1.124
A_G2:C29_A
2
-6.989
-0.892
-0.098
-0.380
4.097
1
20
A
3
A
28
0.435
A_U3:A28_A
3
-10.433
0.076
-0.050
-0.157
-8.995
1
19
A
4
A
27
-2.111
A_G4:C27_A
4
-16.945
-0.052
-0.084
-0.172
-0.111
8
A
5
A
26
-16.316
A_G5:A26_A
5
-5.917
-0.198
-0.049
1.526
-5.721
3
A
6
A
24
-173.634
A_G6:G24_A
6
4.515
1.118
0.015
1.319
1.622
1
19
A
7
A
23
-1.706
A_C7:G23_A
7
-0.150
1.016
-0.083
-0.461
6.564
1
19
A
8
A
22
-3.836
A_G8:C22_A
8
2.214
-0.511
0.420
-0.274
-5.053
1
19
A
9
A
20
-0.571
A_C9:G20_A
9
0.879
0.821
0.200
-0.355
0.799
1
20
A
10
A
19
-2.995
A_A10:U19_A
10
-6.978
-0.140
0.154
-0.130
-4.285
1
19
A
11
A
18
-0.235
A_G11:C18_A
11
-8.701
-0.081
-0.147
-0.137
-2.028
1
19
A
12
A
17
-1.262
A_C12:G17_A
12
-3.402
0.958
0.169
-0.439
-11.356
2
A
13
A
16
-119.194
A_U13:G16_A
13
-15.720
0.514
0.777
-4.693
2.617
37.423
A
A
1
2
27.632
A
A
30
29
3.402
17.112
-0.248
-0.978
AA_G1G2:C29C30_AA
1
-0.605
0.976
33.401
-3.723
0.309
2.744
38.543
A
A
2
3
18.524
A
A
29
28
3.053
12.038
0.021
-0.553
AA_G2U3:A28C29_AA
2
-0.378
0.582
36.682
-2.194
-0.074
2.559
42.684
A
A
3
4
34.715
A
A
28
27
3.533
23.920
0.007
-0.752
AA_U3G4:C27A28_AA
3
1.253
-1.818
35.593
-3.500
0.120
3.093
35.312
A
A
4
5
-0.659
A
A
27
26
3.138
-0.399
-0.241
-0.260
AA_G4G5:A26C27_AA
4
4.176
-6.899
35.069
-0.372
0.987
3.076
105.890
A
A
5
6
-5.358
A
A
26
24
3.130
-8.543
-0.495
1.276
AA_G5G6:G24A26_AA
5
-8.194
5.139
105.425
0.910
0.205
0.811
-33.405
A
A
6
7
-38.013
A
A
24
23
4.125
19.719
4.845
0.336
AA_G6C7:G23G24_AA
6
13.444
25.916
-23.546
-3.506
10.421
3.018
38.747
A
A
7
8
37.879
A
A
23
22
3.365
23.486
-0.271
0.499
AA_C7G8:C22G23_AA
7
-2.512
4.052
30.937
-2.401
0.071
3.562
58.936
A
A
8
9
21.565
A
A
22
20
3.064
20.767
3.660
0.605
AA_G8C9:G20C22_AA
8
8.682
-9.016
54.829
-0.516
-3.247
2.663
30.976
A
A
9
10
17.572
A
A
20
19
2.942
9.246
-1.183
-0.652
AA_C9A10:U19G20_AA
9
-1.111
2.111
29.575
-2.787
2.027
2.634
36.421
A
A
10
11
28.337
A
A
19
18
3.416
17.061
0.260
-0.897
AA_A10G11:C18U19_AA
10
0.392
-0.652
32.296
-3.770
-0.362
2.567
42.418
A
A
11
12
28.359
A
A
18
17
3.237
19.784
0.000
-0.715
AA_G11C12:G17C18_AA
11
-1.749
2.506
37.672
-2.893
-0.168
2.718
102.673
A
A
12
13
5.701
A
A
17
16
2.795
8.896
0.038
-1.149
AA_C12U13:G16G17_AA
12
4.097
-2.626
102.337
-0.846
0.026
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
ENSEMBLE OF 5 STRUCTURES
ENSEMBLE OF 5 STRUCTURES
Y
BNL
1997-03-20
REL
5
BRUNGER
refinement
X-PLOR
3.1
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
G
5
n
5
G
5
A
G
6
n
6
G
6
A
C
7
n
7
C
7
A
G
8
n
8
G
8
A
C
9
n
9
C
9
A
A
10
n
10
A
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
U
13
n
13
U
13
A
U
14
n
14
U
14
A
C
15
n
15
C
15
A
G
16
n
16
G
16
A
G
17
n
17
G
17
A
C
18
n
18
C
18
A
U
19
n
19
U
19
A
G
20
n
20
G
20
A
A
21
n
21
A
21
A
C
22
n
22
C
22
A
G
23
n
23
G
23
A
G
24
n
24
G
24
A
U
25
n
25
U
25
A
A
26
n
26
A
26
A
C
27
n
27
C
27
A
A
28
n
28
A
28
A
C
29
n
29
C
29
A
C
30
n
30
C
30
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
O5'
C
G
7
8
1.51
1
A
A
HO2'
O5'
C
A
9
10
1.51
1
A
A
O2'
H5
G
C
20
22
1.52
1
A
A
HO2'
O4'
G
C
6
7
1.57
2
A
A
HO2'
O5'
A
C
26
27
1.36
2
A
A
O2
H21
U
G
13
16
1.40
2
A
A
HO2'
O5'
C
A
9
10
1.43
2
A
A
HO2'
OP2
G
G
5
6
1.46
2
A
A
O2'
H5
G
C
20
22
1.56
2
A
A
O2'
H6
A
C
26
27
1.56
2
A
A
HO2'
O5'
C
G
7
8
1.57
3
A
A
HO2'
O5'
A
C
21
22
1.32
3
A
A
HO2'
O5'
C
A
9
10
1.33
3
A
A
HO2'
O5'
C
G
15
16
1.39
3
A
A
HO2'
O5'
G
G
23
24
1.43
3
A
A
HO2'
O5'
G
U
24
25
1.47
3
A
A
HO2'
O4'
G
C
8
9
1.50
3
A
A
HO2'
O5'
C
G
7
8
1.60
3
A
A
O2
H21
U
G
13
16
1.60
4
A
A
H3
O2'
U
C
13
15
1.31
4
A
A
HO2'
O5'
C
G
15
16
1.32
4
A
A
HO2'
O5'
G
G
23
24
1.35
4
A
A
HO2'
O5'
A
C
26
27
1.40
4
A
A
HO2'
O4'
G
C
6
7
1.43
4
A
A
O2'
H6
A
C
26
27
1.46
4
A
A
O2'
H5
G
C
20
22
1.50
4
A
A
HO2'
O5'
C
A
9
10
1.52
4
A
A
HO2'
O5'
C
G
7
8
1.53
4
A
A
HO2'
OP2
G
G
5
6
1.53
5
A
A
HO2'
O5'
C
A
9
10
1.43
5
A
A
HO2'
O5'
C
G
22
23
1.47
5
A
A
HO2'
O5'
G
U
24
25
1.55
5
A
A
HO2'
O5'
C
G
7
8
1.58
1
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
1
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
1
-3.85
0.40
106.40
102.55
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
1
-4.00
0.50
104.30
100.30
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
1
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
1
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
-4.00
0.50
104.30
100.30
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
1
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
1
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
1
-3.84
0.50
104.30
100.46
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
1
7.14
0.50
113.10
120.24
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
1
-4.05
0.40
106.40
102.35
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
1
-4.15
0.50
104.30
100.15
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
1
6.89
0.50
113.10
119.99
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
1
-3.74
0.40
106.40
102.66
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
1
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
1
7.16
0.50
113.10
120.26
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
1
-3.86
0.40
106.40
102.54
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
1
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
1
6.38
0.50
113.80
120.18
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
1
-3.41
0.40
105.80
102.39
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
1
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
1
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
1
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
1
-3.87
0.50
104.30
100.43
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
1
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
1
-3.91
0.40
106.40
102.49
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
1
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
1
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
1
-3.72
0.40
106.40
102.68
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
1
5.00
0.80
101.50
106.50
A
A
A
C3'
C2'
C1'
G
G
G
20
20
20
N
1
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
1
6.84
0.50
113.10
119.94
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
1
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
1
-3.62
0.50
103.90
100.28
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
1
6.28
0.50
113.80
120.08
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
1
-3.64
0.40
105.80
102.16
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
1
4.93
0.80
101.50
106.43
A
A
A
C3'
C2'
C1'
C
C
C
22
22
22
N
1
-3.98
0.50
104.30
100.32
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
1
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
1
-3.73
0.40
106.40
102.67
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
1
-4.00
0.50
104.30
100.30
A
A
A
C5
N7
C8
G
G
G
24
24
24
N
1
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
24
24
24
N
1
-4.03
0.40
106.40
102.37
A
A
A
C8
N9
C4
G
G
G
24
24
24
N
1
-3.82
0.50
103.90
100.08
A
A
A
C5
N7
C8
A
A
A
26
26
26
N
1
6.04
0.50
113.80
119.84
A
A
A
N7
C8
N9
A
A
A
26
26
26
N
1
-3.26
0.40
105.80
102.54
A
A
A
C8
N9
C4
A
A
A
26
26
26
N
1
-3.86
0.50
103.90
100.04
A
A
A
C5
N7
C8
A
A
A
28
28
28
N
1
6.24
0.50
113.80
120.04
A
A
A
N7
C8
N9
A
A
A
28
28
28
N
1
-3.31
0.40
105.80
102.49
A
A
A
C8
N9
C4
A
A
A
28
28
28
N
2
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
2
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
2
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
2
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
2
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
2
-3.71
0.40
106.40
102.69
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
2
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
2
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
2
-3.74
0.40
106.40
102.66
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
2
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
2
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
2
-3.88
0.40
106.40
102.52
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
2
-4.15
0.50
104.30
100.15
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
2
6.83
0.50
113.10
119.93
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
2
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
2
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
2
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
2
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
2
-3.69
0.50
103.90
100.21
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
2
6.17
0.50
113.80
119.97
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
2
-3.35
0.40
105.80
102.45
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
2
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
2
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
2
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
2
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
2
6.89
0.50
113.10
119.99
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
2
-3.85
0.40
106.40
102.55
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
2
-4.00
0.50
104.30
100.30
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
2
7.03
0.50
113.10
120.13
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
2
-3.79
0.40
106.40
102.61
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
2
4.86
0.80
101.50
106.36
A
A
A
C3'
C2'
C1'
G
G
G
20
20
20
N
2
-3.93
0.50
104.30
100.37
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
2
6.79
0.50
113.10
119.89
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
2
-3.69
0.40
106.40
102.71
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
2
-3.58
0.50
103.90
100.32
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
2
6.25
0.50
113.80
120.05
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
2
-3.60
0.40
105.80
102.20
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
2
4.93
0.80
101.50
106.43
A
A
A
C3'
C2'
C1'
C
C
C
22
22
22
N
2
-4.09
0.50
104.30
100.21
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
2
6.90
0.50
113.10
120.00
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
2
-3.70
0.40
106.40
102.70
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
2
-3.92
0.50
104.30
100.38
A
A
A
C5
N7
C8
G
G
G
24
24
24
N
2
7.06
0.50
113.10
120.16
A
A
A
N7
C8
N9
G
G
G
24
24
24
N
2
-3.99
0.40
106.40
102.41
A
A
A
C8
N9
C4
G
G
G
24
24
24
N
2
5.10
0.80
101.50
106.60
A
A
A
C3'
C2'
C1'
A
A
A
26
26
26
N
2
-3.80
0.50
103.90
100.10
A
A
A
C5
N7
C8
A
A
A
26
26
26
N
2
6.23
0.50
113.80
120.03
A
A
A
N7
C8
N9
A
A
A
26
26
26
N
2
-3.26
0.40
105.80
102.54
A
A
A
C8
N9
C4
A
A
A
26
26
26
N
2
-3.74
0.50
103.90
100.16
A
A
A
C5
N7
C8
A
A
A
28
28
28
N
2
6.31
0.50
113.80
120.11
A
A
A
N7
C8
N9
A
A
A
28
28
28
N
2
-3.43
0.40
105.80
102.37
A
A
A
C8
N9
C4
A
A
A
28
28
28
N
3
-3.95
0.50
104.30
100.35
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
3
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
3
-3.83
0.40
106.40
102.57
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
3
-3.88
0.50
104.30
100.42
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
3
6.94
0.50
113.10
120.04
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
3
-3.80
0.40
106.40
102.60
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
3
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
3
7.01
0.50
113.10
120.11
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
3
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
3
-3.84
0.50
104.30
100.46
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
3
7.12
0.50
113.10
120.22
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
3
-4.03
0.40
106.40
102.37
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
3
-4.14
0.50
104.30
100.16
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
3
6.95
0.50
113.10
120.05
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
3
-3.77
0.40
106.40
102.63
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
3
5.10
0.80
101.50
106.60
A
A
A
C3'
C2'
C1'
C
C
C
7
7
7
N
3
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
3
6.79
0.50
113.10
119.89
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
3
-3.61
0.40
106.40
102.79
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
3
4.94
0.80
101.50
106.44
A
A
A
C3'
C2'
C1'
C
C
C
9
9
9
N
3
-3.75
0.50
103.90
100.15
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
3
6.35
0.50
113.80
120.15
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
3
-3.38
0.40
105.80
102.42
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
3
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
3
6.97
0.50
113.10
120.07
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
3
-3.81
0.40
106.40
102.59
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
3
-3.86
0.50
104.30
100.44
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
3
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
3
-3.96
0.40
106.40
102.44
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
3
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
3
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
3
-3.70
0.40
106.40
102.70
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
3
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
3
6.93
0.50
113.10
120.03
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
3
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
3
-3.61
0.50
103.90
100.29
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
3
6.09
0.50
113.80
119.89
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
3
-3.46
0.40
105.80
102.34
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
3
4.88
0.80
101.50
106.38
A
A
A
C3'
C2'
C1'
C
C
C
22
22
22
N
3
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
3
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
3
-3.73
0.40
106.40
102.67
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
3
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
24
24
24
N
3
7.10
0.50
113.10
120.20
A
A
A
N7
C8
N9
G
G
G
24
24
24
N
3
-4.00
0.40
106.40
102.40
A
A
A
C8
N9
C4
G
G
G
24
24
24
N
3
-3.60
0.50
103.90
100.30
A
A
A
C5
N7
C8
A
A
A
26
26
26
N
3
6.18
0.50
113.80
119.98
A
A
A
N7
C8
N9
A
A
A
26
26
26
N
3
-3.49
0.40
105.80
102.31
A
A
A
C8
N9
C4
A
A
A
26
26
26
N
3
-3.75
0.50
103.90
100.15
A
A
A
C5
N7
C8
A
A
A
28
28
28
N
3
6.27
0.50
113.80
120.07
A
A
A
N7
C8
N9
A
A
A
28
28
28
N
3
-3.35
0.40
105.80
102.45
A
A
A
C8
N9
C4
A
A
A
28
28
28
N
4
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
4
7.05
0.50
113.10
120.15
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
4
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
4
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
4
6.99
0.50
113.10
120.09
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
4
-3.87
0.40
106.40
102.53
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
4
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
4
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
4
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
4
-3.85
0.50
104.30
100.45
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
4
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
4
-3.95
0.40
106.40
102.45
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
4
-4.16
0.50
104.30
100.14
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
4
6.69
0.50
113.10
119.79
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
4
-3.51
0.40
106.40
102.89
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
4
4.96
0.80
101.50
106.46
A
A
A
C3'
C2'
C1'
C
C
C
7
7
7
N
4
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
4
6.97
0.50
113.10
120.07
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
4
-3.70
0.40
106.40
102.70
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
4
-3.71
0.50
103.90
100.19
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
4
6.31
0.50
113.80
120.11
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
4
-3.41
0.40
105.80
102.39
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
4
-4.07
0.50
104.30
100.23
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
4
7.15
0.50
113.10
120.25
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
4
-3.93
0.40
106.40
102.47
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
4
-4.04
0.50
104.30
100.26
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
4
6.92
0.50
113.10
120.02
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
4
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
4
-3.88
0.50
104.30
100.42
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
4
7.09
0.50
113.10
120.19
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
4
-3.71
0.40
106.40
102.69
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
4
4.97
0.80
101.50
106.47
A
A
A
C3'
C2'
C1'
G
G
G
20
20
20
N
4
-4.03
0.50
104.30
100.27
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
4
6.90
0.50
113.10
120.00
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
4
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
4
-3.74
0.50
103.90
100.16
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
4
6.37
0.50
113.80
120.17
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
4
-3.56
0.40
105.80
102.24
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
4
-3.97
0.50
104.30
100.33
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
4
6.96
0.50
113.10
120.06
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
4
-3.83
0.40
106.40
102.57
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
4
-4.09
0.50
104.30
100.21
A
A
A
C5
N7
C8
G
G
G
24
24
24
N
4
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
24
24
24
N
4
-3.90
0.40
106.40
102.50
A
A
A
C8
N9
C4
G
G
G
24
24
24
N
4
-3.84
0.50
103.90
100.06
A
A
A
C5
N7
C8
A
A
A
26
26
26
N
4
6.32
0.50
113.80
120.12
A
A
A
N7
C8
N9
A
A
A
26
26
26
N
4
-3.41
0.40
105.80
102.39
A
A
A
C8
N9
C4
A
A
A
26
26
26
N
4
-3.67
0.50
103.90
100.23
A
A
A
C5
N7
C8
A
A
A
28
28
28
N
4
6.12
0.50
113.80
119.92
A
A
A
N7
C8
N9
A
A
A
28
28
28
N
4
-3.28
0.40
105.80
102.52
A
A
A
C8
N9
C4
A
A
A
28
28
28
N
5
-3.96
0.50
104.30
100.34
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
5
6.98
0.50
113.10
120.08
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
5
-3.78
0.40
106.40
102.62
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
5
-4.01
0.50
104.30
100.29
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
5
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
5
-3.76
0.40
106.40
102.64
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
5
-4.10
0.50
104.30
100.20
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
5
6.88
0.50
113.10
119.98
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
5
-3.70
0.40
106.40
102.70
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
5
-3.86
0.50
104.30
100.44
A
A
A
C5
N7
C8
G
G
G
5
5
5
N
5
7.10
0.50
113.10
120.20
A
A
A
N7
C8
N9
G
G
G
5
5
5
N
5
-3.95
0.40
106.40
102.45
A
A
A
C8
N9
C4
G
G
G
5
5
5
N
5
-4.07
0.50
104.30
100.23
A
A
A
C5
N7
C8
G
G
G
6
6
6
N
5
6.84
0.50
113.10
119.94
A
A
A
N7
C8
N9
G
G
G
6
6
6
N
5
-3.68
0.40
106.40
102.72
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
5
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
8
8
8
N
5
6.97
0.50
113.10
120.07
A
A
A
N7
C8
N9
G
G
G
8
8
8
N
5
-3.75
0.40
106.40
102.65
A
A
A
C8
N9
C4
G
G
G
8
8
8
N
5
-3.77
0.50
103.90
100.13
A
A
A
C5
N7
C8
A
A
A
10
10
10
N
5
6.31
0.50
113.80
120.11
A
A
A
N7
C8
N9
A
A
A
10
10
10
N
5
-3.36
0.40
105.80
102.44
A
A
A
C8
N9
C4
A
A
A
10
10
10
N
5
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
11
11
11
N
5
7.00
0.50
113.10
120.10
A
A
A
N7
C8
N9
G
G
G
11
11
11
N
5
-3.86
0.40
106.40
102.54
A
A
A
C8
N9
C4
G
G
G
11
11
11
N
5
-4.02
0.50
104.30
100.28
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
5
6.96
0.50
113.10
120.06
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
5
-3.82
0.40
106.40
102.58
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
5
-3.99
0.50
104.30
100.31
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
5
7.02
0.50
113.10
120.12
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
5
-3.77
0.40
106.40
102.63
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
5
4.89
0.80
101.50
106.39
A
A
A
C3'
C2'
C1'
G
G
G
20
20
20
N
5
-4.06
0.50
104.30
100.24
A
A
A
C5
N7
C8
G
G
G
20
20
20
N
5
7.04
0.50
113.10
120.14
A
A
A
N7
C8
N9
G
G
G
20
20
20
N
5
-3.84
0.40
106.40
102.56
A
A
A
C8
N9
C4
G
G
G
20
20
20
N
5
-3.56
0.50
103.90
100.34
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
5
6.00
0.50
113.80
119.80
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
5
-3.33
0.40
105.80
102.47
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
5
-4.08
0.50
104.30
100.22
A
A
A
C5
N7
C8
G
G
G
23
23
23
N
5
6.90
0.50
113.10
120.00
A
A
A
N7
C8
N9
G
G
G
23
23
23
N
5
-3.72
0.40
106.40
102.68
A
A
A
C8
N9
C4
G
G
G
23
23
23
N
5
-3.90
0.50
104.30
100.40
A
A
A
C5
N7
C8
G
G
G
24
24
24
N
5
7.13
0.50
113.10
120.23
A
A
A
N7
C8
N9
G
G
G
24
24
24
N
5
-3.98
0.40
106.40
102.42
A
A
A
C8
N9
C4
G
G
G
24
24
24
N
5
-3.72
0.50
103.90
100.18
A
A
A
C5
N7
C8
A
A
A
26
26
26
N
5
6.30
0.50
113.80
120.10
A
A
A
N7
C8
N9
A
A
A
26
26
26
N
5
-3.34
0.40
105.80
102.46
A
A
A
C8
N9
C4
A
A
A
26
26
26
N
5
-3.69
0.50
103.90
100.21
A
A
A
C5
N7
C8
A
A
A
28
28
28
N
5
6.21
0.50
113.80
120.01
A
A
A
N7
C8
N9
A
A
A
28
28
28
N
5
-3.40
0.40
105.80
102.40
A
A
A
C8
N9
C4
A
A
A
28
28
28
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
30
A
N3
C
30
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
30
A
O2
C
30
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
30
A
N4
C
30
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
29
A
N3
C
29
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
29
A
O2
C
29
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
29
A
N4
C
29
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
28
A
N1
A
28
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
28
A
N6
A
28
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
27
A
N3
C
27
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
27
A
O2
C
27
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
27
A
N4
C
27
1_555
hydrog
TYPE_8_PAIR
A
G
5
A
N1
G
5
1_555
A
A
26
A
N1
A
26
1_555
hydrog
TYPE_8_PAIR
A
G
5
A
O6
G
5
1_555
A
A
26
A
N6
A
26
1_555
hydrog
TYPE_3_PAIR
A
G
6
A
N1
G
6
1_555
A
G
24
A
O6
G
24
1_555
hydrog
TYPE_3_PAIR
A
G
6
A
O6
G
6
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
C
7
A
N3
C
7
1_555
A
G
23
A
N1
G
23
1_555
hydrog
WATSON-CRICK
A
C
7
A
N4
C
7
1_555
A
G
23
A
O6
G
23
1_555
hydrog
WATSON-CRICK
A
C
7
A
O2
C
7
1_555
A
G
23
A
N2
G
23
1_555
hydrog
WATSON-CRICK
A
G
8
A
N1
G
8
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
G
8
A
N2
G
8
1_555
A
C
22
A
O2
C
22
1_555
hydrog
WATSON-CRICK
A
G
8
A
O6
G
8
1_555
A
C
22
A
N4
C
22
1_555
hydrog
WATSON-CRICK
A
C
9
A
N3
C
9
1_555
A
G
20
A
N1
G
20
1_555
hydrog
WATSON-CRICK
A
C
9
A
N4
C
9
1_555
A
G
20
A
O6
G
20
1_555
hydrog
WATSON-CRICK
A
C
9
A
O2
C
9
1_555
A
G
20
A
N2
G
20
1_555
hydrog
WATSON-CRICK
A
A
10
A
N1
A
10
1_555
A
U
19
A
N3
U
19
1_555
hydrog
WATSON-CRICK
A
A
10
A
N6
A
10
1_555
A
U
19
A
O4
U
19
1_555
hydrog
WATSON-CRICK
A
G
11
A
N1
G
11
1_555
A
C
18
A
N3
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
N2
G
11
1_555
A
C
18
A
O2
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
O6
G
11
1_555
A
C
18
A
N4
C
18
1_555
hydrog
WATSON-CRICK
A
C
12
A
N3
C
12
1_555
A
G
17
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
N4
C
12
1_555
A
G
17
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
O2
C
12
1_555
A
G
17
A
N2
G
17
1_555
hydrog
U-G MISPAIR
A
U
13
A
O2
U
13
1_555
A
G
16
A
N1
G
16
1_555
RNA
RIBONUCLEIC ACID, RNA
1EBR
PDB
1
1EBR
1
30
1EBR
1
30
1EBR
A
1
1
30
1
P 1