0.019736 0.000000 0.006007 0.000000 0.025800 0.000000 0.000000 0.000000 0.024578 0.00000 0.00000 0.00000 Rosano, C. Bolognesi, M. Ascenzi, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 106.93 90.00 50.670 38.760 42.530 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C N -1 26.017 CYANIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biophys.J. BIOJAU 0030 0006-3495 77 1093 1099 10423453 Cyanide binding to Lucina pectinata hemoglobin I and to sperm whale myoglobin: an x-ray crystallographic study. 1999 10.2210/pdb1ebt/pdb pdb_00001ebt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 300.0 1 IMAGE PLATE 1995-12 RIGAKU RAXIS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 14744.429 HEMOGLOBIN 1 nat polymer 26.017 CYANIDE ION 1 syn non-polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 18.015 water 79 nat water no no SLSAAQKDNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPNM SLSAAQKDNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPNM A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lucina sample 29163 Lucina pectinata 1 2.50 50.8 7.00 pH 7.00 database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 2000-01-13 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-11-04 REL REL CYN CYANIDE ION HEM PROTOPORPHYRIN IX CONTAINING FE HOH water 1FLP PDB experimental model CYN 145 2 CYN CYN 145 A HEM 144 3 HEM HEM 144 A HOH 502 4 HOH HOH 502 A HOH 503 4 HOH HOH 503 A HOH 504 4 HOH HOH 504 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 507 4 HOH HOH 507 A HOH 508 4 HOH HOH 508 A HOH 510 4 HOH HOH 510 A HOH 511 4 HOH HOH 511 A HOH 512 4 HOH HOH 512 A HOH 514 4 HOH HOH 514 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 519 4 HOH HOH 519 A HOH 520 4 HOH HOH 520 A HOH 521 4 HOH HOH 521 A HOH 522 4 HOH HOH 522 A HOH 523 4 HOH HOH 523 A HOH 524 4 HOH HOH 524 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 529 4 HOH HOH 529 A HOH 530 4 HOH HOH 530 A HOH 533 4 HOH HOH 533 A HOH 534 4 HOH HOH 534 A HOH 535 4 HOH HOH 535 A HOH 537 4 HOH HOH 537 A HOH 538 4 HOH HOH 538 A HOH 540 4 HOH HOH 540 A HOH 544 4 HOH HOH 544 A HOH 545 4 HOH HOH 545 A HOH 547 4 HOH HOH 547 A HOH 548 4 HOH HOH 548 A HOH 549 4 HOH HOH 549 A HOH 550 4 HOH HOH 550 A HOH 553 4 HOH HOH 553 A HOH 554 4 HOH HOH 554 A HOH 556 4 HOH HOH 556 A HOH 563 4 HOH HOH 563 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 567 4 HOH HOH 567 A HOH 568 4 HOH HOH 568 A HOH 569 4 HOH HOH 569 A HOH 570 4 HOH HOH 570 A HOH 572 4 HOH HOH 572 A HOH 573 4 HOH HOH 573 A HOH 575 4 HOH HOH 575 A HOH 579 4 HOH HOH 579 A HOH 586 4 HOH HOH 586 A HOH 588 4 HOH HOH 588 A HOH 589 4 HOH HOH 589 A HOH 594 4 HOH HOH 594 A HOH 595 4 HOH HOH 595 A HOH 597 4 HOH HOH 597 A HOH 598 4 HOH HOH 598 A HOH 600 4 HOH HOH 600 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 609 4 HOH HOH 609 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 623 4 HOH HOH 623 A HOH 633 4 HOH HOH 633 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 644 4 HOH HOH 644 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A SER 1 n 1 SER 1 A LEU 2 n 2 LEU 2 A SER 3 n 3 SER 3 A ALA 4 n 4 ALA 4 A ALA 5 n 5 ALA 5 A GLN 6 n 6 GLN 6 A LYS 7 n 7 LYS 7 A ASP 8 n 8 ASP 8 A ASN 9 n 9 ASN 9 A VAL 10 n 10 VAL 10 A THR 11 n 11 THR 11 A SER 12 n 12 SER 12 A SER 13 n 13 SER 13 A TRP 14 n 14 TRP 14 A ALA 15 n 15 ALA 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A SER 18 n 18 SER 18 A ALA 19 n 19 ALA 19 A ALA 20 n 20 ALA 20 A TRP 21 n 21 TRP 21 A GLY 22 n 22 GLY 22 A THR 23 n 23 THR 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A PRO 26 n 26 PRO 26 A GLU 27 n 27 GLU 27 A PHE 28 n 28 PHE 28 A PHE 29 n 29 PHE 29 A MET 30 n 30 MET 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A PHE 33 n 33 PHE 33 A ASP 34 n 34 ASP 34 A ALA 35 n 35 ALA 35 A HIS 36 n 36 HIS 36 A ASP 37 n 37 ASP 37 A ASP 38 n 38 ASP 38 A VAL 39 n 39 VAL 39 A PHE 40 n 40 PHE 40 A ALA 41 n 41 ALA 41 A LYS 42 n 42 LYS 42 A PHE 43 n 43 PHE 43 A SER 44 n 44 SER 44 A GLY 45 n 45 GLY 45 A LEU 46 n 46 LEU 46 A PHE 47 n 47 PHE 47 A SER 48 n 48 SER 48 A GLY 49 n 49 GLY 49 A ALA 50 n 50 ALA 50 A ALA 51 n 51 ALA 51 A LYS 52 n 52 LYS 52 A GLY 53 n 53 GLY 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A LYS 56 n 56 LYS 56 A ASN 57 n 57 ASN 57 A THR 58 n 58 THR 58 A PRO 59 n 59 PRO 59 A GLU 60 n 60 GLU 60 A MET 61 n 61 MET 61 A ALA 62 n 62 ALA 62 A ALA 63 n 63 ALA 63 A GLN 64 n 64 GLN 64 A ALA 65 n 65 ALA 65 A GLN 66 n 66 GLN 66 A SER 67 n 67 SER 67 A PHE 68 n 68 PHE 68 A LYS 69 n 69 LYS 69 A GLY 70 n 70 GLY 70 A LEU 71 n 71 LEU 71 A VAL 72 n 72 VAL 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A TRP 75 n 75 TRP 75 A VAL 76 n 76 VAL 76 A ASP 77 n 77 ASP 77 A ASN 78 n 78 ASN 78 A LEU 79 n 79 LEU 79 A ASP 80 n 80 ASP 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A GLY 83 n 83 GLY 83 A ALA 84 n 84 ALA 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A GLY 87 n 87 GLY 87 A GLN 88 n 88 GLN 88 A CYS 89 n 89 CYS 89 A LYS 90 n 90 LYS 90 A THR 91 n 91 THR 91 A PHE 92 n 92 PHE 92 A ALA 93 n 93 ALA 93 A ALA 94 n 94 ALA 94 A ASN 95 n 95 ASN 95 A HIS 96 n 96 HIS 96 A LYS 97 n 97 LYS 97 A ALA 98 n 98 ALA 98 A ARG 99 n 99 ARG 99 A GLY 100 n 100 GLY 100 A ILE 101 n 101 ILE 101 A SER 102 n 102 SER 102 A ALA 103 n 103 ALA 103 A GLY 104 n 104 GLY 104 A GLN 105 n 105 GLN 105 A LEU 106 n 106 LEU 106 A GLU 107 n 107 GLU 107 A ALA 108 n 108 ALA 108 A ALA 109 n 109 ALA 109 A PHE 110 n 110 PHE 110 A LYS 111 n 111 LYS 111 A VAL 112 n 112 VAL 112 A LEU 113 n 113 LEU 113 A SER 114 n 114 SER 114 A GLY 115 n 115 GLY 115 A PHE 116 n 116 PHE 116 A MET 117 n 117 MET 117 A LYS 118 n 118 LYS 118 A SER 119 n 119 SER 119 A TYR 120 n 120 TYR 120 A GLY 121 n 121 GLY 121 A GLY 122 n 122 GLY 122 A ASP 123 n 123 ASP 123 A GLU 124 n 124 GLU 124 A GLY 125 n 125 GLY 125 A ALA 126 n 126 ALA 126 A TRP 127 n 127 TRP 127 A THR 128 n 128 THR 128 A ALA 129 n 129 ALA 129 A VAL 130 n 130 VAL 130 A ALA 131 n 131 ALA 131 A GLY 132 n 132 GLY 132 A ALA 133 n 133 ALA 133 A LEU 134 n 134 LEU 134 A MET 135 n 135 MET 135 A GLY 136 n 136 GLY 136 A GLU 137 n 137 GLU 137 A ILE 138 n 138 ILE 138 A GLU 139 n 139 GLU 139 A PRO 140 n 140 PRO 140 A ASN 141 n 141 ASN 141 A MET 142 n 142 MET 142 A 0.184 0.212 1208 10.000 author_defined_assembly 1 monomeric A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NA HEM 1_555 94.0 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NB HEM 1_555 90.7 A HEM 144 C NA HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NB HEM 1_555 86.8 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NC HEM 1_555 85.5 A HEM 144 C NA HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NC HEM 1_555 177.3 A HEM 144 C NB HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C NC HEM 1_555 90.5 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C ND HEM 1_555 89.4 A HEM 144 C NA HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C ND HEM 1_555 95.5 A HEM 144 C NB HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C ND HEM 1_555 177.7 A HEM 144 C NC HEM 1_555 A HEM 144 C FE HEM 1_555 A HEM 144 C ND HEM 1_555 87.2 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 170.6 A HEM 144 C NA HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 95.2 A HEM 144 C NB HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 91.6 A HEM 144 C NC HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 85.3 A HEM 144 C ND HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 88.0 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 162.0 A HEM 144 C NA HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 70.5 A HEM 144 C NB HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 79.7 A HEM 144 C NC HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 109.5 A HEM 144 C ND HEM 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 100.9 A CYN 145 B C CYN 1_555 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 27.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CE LYS 16 A CE LYS 16 0 Y 1 A NZ LYS 16 A NZ LYS 16 0 Y 1 A OD1 ASP 37 A OD1 ASP 37 0 Y 1 A OD2 ASP 37 A OD2 ASP 37 0 Y 1 A CD GLN 66 A CD GLN 66 0 Y 1 A NE2 GLN 66 A NE2 GLN 66 0 Y 1 A CG ASN 74 A CG ASN 74 0 Y 1 A CD LYS 90 A CD LYS 90 0 Y 1 A CE LYS 90 A CE LYS 90 0 Y 1 A NZ LYS 90 A NZ LYS 90 0 Y 1 A CE LYS 97 A CE LYS 97 0 Y 1 A NZ LYS 97 A NZ LYS 97 0 Y 1 A CD LYS 111 A CD LYS 111 0 Y 1 A CE LYS 111 A CE LYS 111 0 Y 1 A NZ LYS 111 A NZ LYS 111 0 Y 1 A NZ LYS 118 A NZ LYS 118 0 Y 1 A CD GLU 139 A CD GLU 139 0 Y 1 A OE1 GLU 139 A OE1 GLU 139 0 Y 1 A OE2 GLU 139 A OE2 GLU 139 0 Y 1 -6.36 0.90 118.30 111.94 A A A CB CG OD2 ASP ASP ASP 38 38 38 N 1 -6.95 0.90 118.30 111.35 A A A CB CG OD1 ASP ASP ASP 77 77 77 N 1 6.36 0.90 118.30 124.66 A A A CB CG OD2 ASP ASP ASP 77 77 77 N 1 -6.47 0.90 118.30 111.83 A A A CB CG OD1 ASP ASP ASP 80 80 80 N 1 6.66 0.90 118.30 124.96 A A A CB CG OD2 ASP ASP ASP 80 80 80 N 1 -4.95 0.50 120.30 115.35 A A A NE CZ NH2 ARG ARG ARG 99 99 99 N 1 A A CD OE2 GLU GLU 27 27 0.077 0.011 1.252 1.329 N 1 A A CD OE2 GLU GLU 86 86 0.068 0.011 1.252 1.320 N 1 A A CD OE1 GLU GLU 137 137 -0.069 0.011 1.252 1.183 N 1.90 24.0 12085 12085 93.0 1 TNT BCORREL 0.000 MOLECULAR REPLACEMENT 1FLP TNT PROTGEO 57.80 0.84 1.90 24.0 79 1160 45 0 1036 0.015 1106 1.500 2.397 1486 2.000 14.176 637 0.000 0.000 0.016 28 2.500 0.011 163 9.000 2.321 1059 10.000 0.062 11 15.000 1.900 24.000 1EBT 12085 1 2.200 93.0 phasing AMoRE refinement TNT 5E data reduction MOSFLM HEMOGLOBIN I FROM THE CLAM LUCINA PECTINATA BOUND WITH CYANIDE 1 N N 2 N N 3 N N 4 N N A ALA 4 A ALA 4 HELX_P A ALA 19 A ALA 19 1 1 16 A TRP 21 A TRP 21 HELX_P A ALA 35 A ALA 35 1 2 15 A ASP 37 A ASP 37 HELX_P A PHE 43 A PHE 43 1 3 7 A LYS 52 A LYS 52 HELX_P A THR 54 A THR 54 5 4 3 A PRO 59 A PRO 59 HELX_P A ASN 78 A ASN 78 1 5 20 A ALA 82 A ALA 82 HELX_P A ARG 99 A ARG 99 1 6 18 A ALA 103 A ALA 103 HELX_P A TYR 120 A TYR 120 1 7 18 A GLU 124 A GLU 124 HELX_P A ILE 138 A ILE 138 1 8 15 metalc 2.150 A HIS 96 A NE2 HIS 96 1_555 A HEM 144 C FE HEM 1_555 metalc 2.541 A HEM 144 C FE HEM 1_555 A CYN 145 B C CYN 1_555 metalc 2.662 A HEM 144 C FE HEM 1_555 A CYN 145 B N CYN 1_555 OXYGEN TRANSPORT OXYGEN TRANSPORT, HEMOGLOBIN, OXYGEN CARRIER, GLOBIN GLB1_LUCPE UNP 1 1 P41260 SLEAAQKSNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPDM 1 142 1EBT 1 142 P41260 A 1 1 142 1 GLU SEE REMARK 999 SER 3 1EBT A P41260 UNP 3 3 1 SER SEE REMARK 999 ASP 8 1EBT A P41260 UNP 8 8 1 ASP SEE REMARK 999 ASN 141 1EBT A P41260 UNP 141 141 BINDING SITE FOR RESIDUE CYN A 145 A CYN 145 Software 3 BINDING SITE FOR RESIDUE HEM A 144 A HEM 144 Software 12 A PHE 43 A PHE 43 3 1_555 A GLN 64 A GLN 64 3 1_555 A HEM 144 C HEM 3 1_555 A LYS 42 A LYS 42 12 1_555 A PHE 43 A PHE 43 12 1_555 A GLN 64 A GLN 64 12 1_555 A SER 67 A SER 67 12 1_555 A PHE 68 A PHE 68 12 1_555 A PHE 92 A PHE 92 12 1_555 A ASN 95 A ASN 95 12 1_555 A HIS 96 A HIS 96 12 1_555 A ARG 99 A ARG 99 12 1_555 A ILE 101 A ILE 101 12 1_555 A CYN 145 B CYN 12 1_555 A HOH 504 D HOH 12 1_555 4 P 1 21 1