0.016981 0.000000 0.000000 0.000000 0.011534 0.000000 0.000000 0.000000 0.021413 0.00000 0.00000 0.00000 Unge, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.890 86.700 46.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C42 H52 N6 O8 768.898 N,N-[2,5-O-DIBENZYL-GLUCARYL]-DI-[VALINYL-AMINOMETHANYL-PYRIDINE] INHIBITOR MSA367 non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H Y 250 N C Y 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N C N 263 N O N 264 R C N 265 R C N 266 R C N 267 R C N 268 N C N 269 N O N 270 N N N 271 S C N 272 N C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N N N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N C N 284 N O N 285 N N N 286 S C N 287 N C N 288 N C N 289 N C N 290 N C N 291 N O N 292 N N N 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N N Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N N N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 R C N 417 N O N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N N Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C N 467 N O N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 N C N 485 N C N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing Y 237 N doub Y 238 N sing N 239 N sing Y 240 N sing N 241 N sing Y 242 N doub N 243 N sing Y 244 N sing N 245 N sing Y 246 N doub N 247 N sing N 248 N sing Y 249 N doub Y 250 N sing N 251 N sing Y 252 N sing N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing Y 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N doub N 364 N sing Y 365 N doub N 366 N sing Y 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 270 1746 1758 10.1046/j.1432-1033.2003.03533.x 12694187 Optimization of P1-P3 groups in symmetric and asymmetric HIV-1 protease inhibitors 2003 10.2210/pdb1ec3/pdb pdb_00001ec3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277 1 IMAGE PLATE 1998-03-26 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.958 1.0 I711 MAX II 0.958 SYNCHROTRON MAX II BEAMLINE I711 10803.756 HIV-1 PROTEASE 3.4.23.16 FRAGMENT 69-167 2 man polymer 768.898 N,N-[2,5-O-DIBENZYL-GLUCARYL]-DI-[VALINYL-AMINOMETHANYL-PYRIDINE] 1 syn non-polymer 18.015 water 123 nat water no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli PET11C 4 2.76 55.41 VAPOR DIFFUSION, HANGING DROP 5.5 0.4 M Sodium chloride, 0.05 M MES, 0.02% (W/V) sodium azide, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 diffrn_source chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Data collection Database references Derived calculations 1 0 2002-06-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-03-07 1 4 2024-02-07 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1AJV contains the same protein complexed with the cyclic sulfamide inhibitor aha006 1AJX contains the same protein complexed with the cyclic urea inhibitor aha001 1D4I contains the same protein complexed with the inhibitor bea425 1D4H contains the same protein complexed with the inhibitor bea435 1D4J contains the same protein complexed with the inhibitor msl370 1EBW CONTAINS THE SAME PROTEIN COMPLEXED with the inhibitor bea322 1EBY CONTAINS THE SAME PROTEIN COMPLEXED with the inhibitor bea369 1EBZ CONTAINS THE SAME PROTEIN COMPLEXED with the inhibitor bea388 1EC0 CONTAINS THE SAME PROTEIN COMPLEXED WITH the inhibitor bea403 1EC1 CONTAINS THE SAME PROTEIN COMPLEXED with the inhibitor bea409 1EC2 CONTAINS THE SAME PROTEIN COMPLEXED with the inhibitor bea428 RCSB Y RCSB 2000-01-25 REL REL MS3 N,N-[2,5-O-DIBENZYL-GLUCARYL]-DI-[VALINYL-AMINOMETHANYL-PYRIDINE] HOH water MS3 501 2 MS3 MS3 501 A HOH 604 3 HOH HOH 604 A HOH 606 3 HOH HOH 606 A HOH 610 3 HOH HOH 610 A HOH 611 3 HOH HOH 611 A HOH 613 3 HOH HOH 613 A HOH 614 3 HOH HOH 614 A HOH 615 3 HOH HOH 615 A HOH 616 3 HOH HOH 616 A HOH 619 3 HOH HOH 619 A HOH 620 3 HOH HOH 620 A HOH 621 3 HOH HOH 621 A HOH 622 3 HOH HOH 622 A HOH 623 3 HOH HOH 623 A HOH 624 3 HOH HOH 624 A HOH 625 3 HOH HOH 625 A HOH 626 3 HOH HOH 626 A HOH 629 3 HOH HOH 629 A HOH 632 3 HOH HOH 632 A HOH 635 3 HOH HOH 635 A HOH 638 3 HOH HOH 638 A HOH 639 3 HOH HOH 639 A HOH 642 3 HOH HOH 642 A HOH 643 3 HOH HOH 643 A HOH 644 3 HOH HOH 644 A HOH 645 3 HOH HOH 645 A HOH 647 3 HOH HOH 647 A HOH 648 3 HOH HOH 648 A HOH 653 3 HOH HOH 653 A HOH 661 3 HOH HOH 661 A HOH 663 3 HOH HOH 663 A HOH 664 3 HOH HOH 664 A HOH 665 3 HOH HOH 665 A HOH 667 3 HOH HOH 667 A HOH 671 3 HOH HOH 671 A HOH 672 3 HOH HOH 672 A HOH 673 3 HOH HOH 673 A HOH 674 3 HOH HOH 674 A HOH 675 3 HOH HOH 675 A HOH 676 3 HOH HOH 676 A HOH 677 3 HOH HOH 677 A HOH 679 3 HOH HOH 679 A HOH 680 3 HOH HOH 680 A HOH 681 3 HOH HOH 681 A HOH 683 3 HOH HOH 683 A HOH 685 3 HOH HOH 685 A HOH 693 3 HOH HOH 693 A HOH 694 3 HOH HOH 694 A HOH 696 3 HOH HOH 696 A HOH 700 3 HOH HOH 700 A HOH 703 3 HOH HOH 703 A HOH 706 3 HOH HOH 706 A HOH 707 3 HOH HOH 707 A HOH 709 3 HOH HOH 709 A HOH 710 3 HOH HOH 710 A HOH 712 3 HOH HOH 712 A HOH 718 3 HOH HOH 718 A HOH 601 3 HOH HOH 601 B HOH 602 3 HOH HOH 602 B HOH 603 3 HOH HOH 603 B HOH 605 3 HOH HOH 605 B HOH 607 3 HOH HOH 607 B HOH 608 3 HOH HOH 608 B HOH 609 3 HOH HOH 609 B HOH 612 3 HOH HOH 612 B HOH 617 3 HOH HOH 617 B HOH 618 3 HOH HOH 618 B HOH 627 3 HOH HOH 627 B HOH 628 3 HOH HOH 628 B HOH 630 3 HOH HOH 630 B HOH 631 3 HOH HOH 631 B HOH 633 3 HOH HOH 633 B HOH 634 3 HOH HOH 634 B HOH 636 3 HOH HOH 636 B HOH 637 3 HOH HOH 637 B HOH 640 3 HOH HOH 640 B HOH 641 3 HOH HOH 641 B HOH 646 3 HOH HOH 646 B HOH 649 3 HOH HOH 649 B HOH 650 3 HOH HOH 650 B HOH 651 3 HOH HOH 651 B HOH 652 3 HOH HOH 652 B HOH 654 3 HOH HOH 654 B HOH 655 3 HOH HOH 655 B HOH 656 3 HOH HOH 656 B HOH 657 3 HOH HOH 657 B HOH 658 3 HOH HOH 658 B HOH 659 3 HOH HOH 659 B HOH 660 3 HOH HOH 660 B HOH 662 3 HOH HOH 662 B HOH 666 3 HOH HOH 666 B HOH 668 3 HOH HOH 668 B HOH 669 3 HOH HOH 669 B HOH 670 3 HOH HOH 670 B HOH 678 3 HOH HOH 678 B HOH 682 3 HOH HOH 682 B HOH 684 3 HOH HOH 684 B HOH 686 3 HOH HOH 686 B HOH 687 3 HOH HOH 687 B HOH 688 3 HOH HOH 688 B HOH 689 3 HOH HOH 689 B HOH 690 3 HOH HOH 690 B HOH 691 3 HOH HOH 691 B HOH 692 3 HOH HOH 692 B HOH 695 3 HOH HOH 695 B HOH 697 3 HOH HOH 697 B HOH 698 3 HOH HOH 698 B HOH 699 3 HOH HOH 699 B HOH 701 3 HOH HOH 701 B HOH 702 3 HOH HOH 702 B HOH 704 3 HOH HOH 704 B HOH 705 3 HOH HOH 705 B HOH 708 3 HOH HOH 708 B HOH 711 3 HOH HOH 711 B HOH 713 3 HOH HOH 713 B HOH 714 3 HOH HOH 714 B HOH 715 3 HOH HOH 715 B HOH 716 3 HOH HOH 716 B HOH 717 3 HOH HOH 717 B HOH 719 3 HOH HOH 719 B HOH 720 3 HOH HOH 720 B HOH 721 3 HOH HOH 721 B HOH 722 3 HOH HOH 722 B HOH 723 3 HOH HOH 723 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 101 B GLN 102 n 2 GLN 102 B ILE 103 n 3 ILE 103 B THR 104 n 4 THR 104 B LEU 105 n 5 LEU 105 B TRP 106 n 6 TRP 106 B GLN 107 n 7 GLN 107 B ARG 108 n 8 ARG 108 B PRO 109 n 9 PRO 109 B LEU 110 n 10 LEU 110 B VAL 111 n 11 VAL 111 B THR 112 n 12 THR 112 B ILE 113 n 13 ILE 113 B LYS 114 n 14 LYS 114 B ILE 115 n 15 ILE 115 B GLY 116 n 16 GLY 116 B GLY 117 n 17 GLY 117 B GLN 118 n 18 GLN 118 B LEU 119 n 19 LEU 119 B LYS 120 n 20 LYS 120 B GLU 121 n 21 GLU 121 B ALA 122 n 22 ALA 122 B LEU 123 n 23 LEU 123 B LEU 124 n 24 LEU 124 B ASP 125 n 25 ASP 125 B THR 126 n 26 THR 126 B GLY 127 n 27 GLY 127 B ALA 128 n 28 ALA 128 B ASP 129 n 29 ASP 129 B ASP 130 n 30 ASP 130 B THR 131 n 31 THR 131 B VAL 132 n 32 VAL 132 B LEU 133 n 33 LEU 133 B GLU 134 n 34 GLU 134 B GLU 135 n 35 GLU 135 B MET 136 n 36 MET 136 B SER 137 n 37 SER 137 B LEU 138 n 38 LEU 138 B PRO 139 n 39 PRO 139 B GLY 140 n 40 GLY 140 B ARG 141 n 41 ARG 141 B TRP 142 n 42 TRP 142 B LYS 143 n 43 LYS 143 B PRO 144 n 44 PRO 144 B LYS 145 n 45 LYS 145 B MET 146 n 46 MET 146 B ILE 147 n 47 ILE 147 B GLY 148 n 48 GLY 148 B GLY 149 n 49 GLY 149 B ILE 150 n 50 ILE 150 B GLY 151 n 51 GLY 151 B GLY 152 n 52 GLY 152 B GLY 153 n 53 PHE 153 B ILE 154 n 54 ILE 154 B LYS 155 n 55 LYS 155 B VAL 156 n 56 VAL 156 B ARG 157 n 57 ARG 157 B GLN 158 n 58 GLN 158 B TYR 159 n 59 TYR 159 B ASP 160 n 60 ASP 160 B GLN 161 n 61 GLN 161 B ILE 162 n 62 ILE 162 B LEU 163 n 63 LEU 163 B ILE 164 n 64 ILE 164 B GLU 165 n 65 GLU 165 B ILE 166 n 66 ILE 166 B CYS 167 n 67 CYS 167 B GLY 168 n 68 GLY 168 B HIS 169 n 69 HIS 169 B LYS 170 n 70 LYS 170 B ALA 171 n 71 ALA 171 B ILE 172 n 72 ILE 172 B GLY 173 n 73 GLY 173 B THR 174 n 74 THR 174 B VAL 175 n 75 VAL 175 B LEU 176 n 76 LEU 176 B VAL 177 n 77 VAL 177 B GLY 178 n 78 GLY 178 B PRO 179 n 79 PRO 179 B THR 180 n 80 THR 180 B PRO 181 n 81 PRO 181 B VAL 182 n 82 VAL 182 B ASN 183 n 83 ASN 183 B ILE 184 n 84 ILE 184 B ILE 185 n 85 ILE 185 B GLY 186 n 86 GLY 186 B ARG 187 n 87 ARG 187 B ASN 188 n 88 ASN 188 B LEU 189 n 89 LEU 189 B LEU 190 n 90 LEU 190 B THR 191 n 91 THR 191 B GLN 192 n 92 GLN 192 B ILE 193 n 93 ILE 193 B GLY 194 n 94 GLY 194 B CYS 195 n 95 CYS 195 B THR 196 n 96 THR 196 B LEU 197 n 97 LEU 197 B ASN 198 n 98 ASN 198 B PHE 199 n 99 PHE 199 B author_and_software_defined_assembly PISA 2 dimeric 5310 -37 9020 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 197 B O LEU 97 B O ASN 198 B O ASN 98 A N THR 96 A N THR 96 A O LEU 97 A O LEU 97 B N ILE 103 B N ILE 3 A N GLY 49 A N GLY 49 A O GLY 52 A O GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A O LEU 23 A O LEU 23 A N ILE 85 A N ILE 85 A N ILE 84 A N ILE 84 A O VAL 32 A O VAL 32 A N LEU 33 A N LEU 33 A O LEU 76 A O LEU 76 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 B N GLY 149 B N GLY 49 B O GLY 152 B O GLY 52 B N GLU 165 B N GLU 65 B O LYS 114 B O LYS 14 B N ILE 115 B N ILE 15 B O GLN 118 B O GLN 18 B O LEU 123 B O LEU 23 B N ILE 185 B N ILE 85 B N ILE 184 B N ILE 84 B O VAL 132 B O VAL 32 B N LEU 133 B N LEU 33 B O LEU 176 B O LEU 76 B O VAL 177 B O VAL 77 B N ARG 157 B N ARG 57 1 B CB PHE 153 B CB PHE 53 1 Y 1 B CG PHE 153 B CG PHE 53 1 Y 1 B CD1 PHE 153 B CD1 PHE 53 1 Y 1 B CD2 PHE 153 B CD2 PHE 53 1 Y 1 B CE1 PHE 153 B CE1 PHE 53 1 Y 1 B CE2 PHE 153 B CE2 PHE 53 1 Y 1 B CZ PHE 153 B CZ PHE 53 1 Y 1 B B O O HOH HOH 713 723 2.02 1 B PRO 179 -66.70 63.38 PROTEIN_REP.PA PROTEIN.TOP WATER_REP.PARA MSA367.TOP MSA367.PAR 26.5 3.51 0.00 0.00 -2.80 0.00 -0.71 0.26 0.008 0.232 1.80 24.58 1099 22831 21878 5.0 95.9 RANDOM 1217007.82 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 Engh & Huber FLAT MODEL 38.81 0.340 0.29 0.26 5.00 0.31 0.26 1.80 24.58 123 1688 56 0 1509 0.014 3.4 25.9 1.17 1.29 1.50 1.96 2.00 8.26 2.00 5.63 2.50 0.39 0.029 0.341 1.91 179 3236 6 5.2 91.9 13.9 1.80 24.58 1EC3 22831 21878 1.0 1.0 0.063 1 11.3 3.4 95.9 0.11 1.80 1.90 3236 1.8 91.9 data reduction DENZO data scaling SCALEPACK model building X-PLOR refinement CNS 0.9 phasing X-PLOR HIV-1 protease in complex with the inhibitor MSA367 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 186 B GLY 86 HELX_P B THR 191 B THR 91 1 3 6 HYDROLASE/HYDROLASE INHIBITOR Dimer, protein-inhibitor complex, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1B1 UNP 1 69 P03366 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1EC3 1 99 P03366 A 1 1 99 69 167 1EC3 101 199 P03366 B 1 1 99 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 196 B THR 96 B ASN 198 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 102 B GLN 2 B ILE 103 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 143 B LYS 43 B GLY 149 B GLY 49 B GLY 152 B GLY 52 B ILE 166 B ILE 66 B LEU 110 B LEU 10 B ILE 115 B ILE 15 B GLN 118 B GLN 18 B LEU 124 B LEU 24 B ILE 184 B ILE 84 B ILE 185 B ILE 85 B VAL 132 B VAL 32 B LEU 133 B LEU 33 B HIS 169 B HIS 69 B VAL 177 B VAL 77 B GLY 152 B GLY 52 B ILE 166 B ILE 66 BINDING SITE FOR RESIDUE MS3 A 501 A MS3 501 Software 25 A ARG 8 A ARG 8 25 1_555 A ASP 25 A ASP 25 25 1_555 A GLY 27 A GLY 27 25 1_555 A ALA 28 A ALA 28 25 1_555 A ASP 29 A ASP 29 25 1_555 A GLY 48 A GLY 48 25 1_555 A GLY 49 A GLY 49 25 1_555 A ILE 50 A ILE 50 25 1_555 A PRO 81 A PRO 81 25 1_555 A VAL 82 A VAL 82 25 1_555 A ILE 84 A ILE 84 25 1_555 A HOH 611 D HOH 25 1_555 A HOH 622 D HOH 25 1_555 B ARG 108 B ARG 8 25 1_555 B LEU 123 B LEU 23 25 1_555 B ASP 125 B ASP 25 25 1_555 B GLY 127 B GLY 27 25 1_555 B ALA 128 B ALA 28 25 1_555 B ASP 129 B ASP 29 25 1_555 B GLY 148 B GLY 48 25 1_555 B GLY 149 B GLY 49 25 1_555 B ILE 150 B ILE 50 25 1_555 B PRO 181 B PRO 81 25 1_555 B VAL 182 B VAL 82 25 1_555 B ILE 184 B ILE 84 25 1_555 18 P 21 21 2