1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wu, J.H.
Chang, C.
Pei, J.M.
Xiao, Q.
Shi, Y.Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
to be published
0353
Solution structure of E2F binding DNA fragment GCGCGAAAC-T-GTTTCGCGC studied by Molecular Dynamics Simulation and Two Dimensional NMR experiment
2000
10.2210/pdb1ecu/pdb
pdb_00001ecu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5821.759
DNA (5'-D(*GP*CP*GP*CP*GP*AP*AP*AP*CP*TP*GP*TP*TP*TP*CP*GP*CP*GP*C)-3')
FRAGMENT OF E2F BINDING DNA
1
syn
polymer
no
no
(DG)(DC)(DG)(DC)(DG)(DA)(DA)(DA)(DC)(DT)(DG)(DT)(DT)(DT)(DC)(DG)(DC)(DG)(DC)
GCGCGAAACTGTTTCGCGC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
5.238
1
19
A
1
A
19
-6.006
A_DG1:DC19_A
1
-7.554
-0.758
0.220
-0.249
3.072
1
19
A
2
A
18
-3.093
A_DC2:DG18_A
2
-8.776
0.641
-0.003
-0.277
-1.478
1
19
A
3
A
17
-0.191
A_DG3:DC17_A
3
-4.859
-0.588
-0.043
-0.222
2.854
1
19
A
4
A
16
-7.261
A_DC4:DG16_A
4
-9.912
0.767
-0.114
-0.348
-8.564
1
19
A
5
A
15
-3.826
A_DG5:DC15_A
5
-18.588
-0.479
-0.560
-0.247
-7.996
1
20
A
6
A
14
-11.096
A_DA6:DT14_A
6
-6.855
0.144
-0.457
-0.074
7.210
1
20
A
7
A
13
-4.413
A_DA7:DT13_A
7
0.589
-0.098
0.083
-0.073
23.936
1
20
A
8
A
12
-6.626
A_DA8:DT12_A
8
4.781
0.778
0.141
0.113
33.435
A
9
A
11
74.812
A_DC9:DG11_A
9
6.401
4.513
1.474
-0.414
3.443
42.159
A
A
1
2
2.187
A
A
19
18
3.456
1.573
0.152
-0.415
AA_DG1DC2:DG18DC19_AA
1
1.764
-2.453
42.096
-0.747
-0.020
2.455
26.532
A
A
2
3
30.759
A
A
18
17
3.282
13.477
0.189
-0.777
AA_DC2DG3:DC17DG18_AA
2
0.863
-1.969
22.892
-5.051
-0.197
3.217
41.255
A
A
3
4
1.035
A
A
17
16
3.210
0.729
0.223
0.080
AA_DG3DC4:DG16DC17_AA
3
1.507
-2.140
41.223
0.037
-0.157
1.990
37.125
A
A
4
5
44.053
A
A
16
15
3.470
25.462
0.434
-0.875
AA_DC4DG5:DC15DG16_AA
4
5.496
-9.508
26.685
-4.722
0.040
3.240
38.647
A
A
5
6
3.327
A
A
15
14
3.271
2.201
-0.026
-0.477
AA_DG5DA6:DT14DC15_AA
5
-0.494
0.746
38.583
-0.991
-0.021
2.916
35.529
A
A
6
7
-3.765
A
A
14
13
2.947
-2.291
0.633
-1.003
AA_DA6DA7:DT13DT14_AA
6
-4.058
6.668
35.232
-1.343
-1.572
2.809
28.589
A
A
7
8
6.272
A
A
13
12
2.929
3.085
-0.633
-1.474
AA_DA7DA8:DT12DT13_AA
7
-3.279
6.667
28.239
-3.602
0.626
1.932
37.280
A
A
8
9
21.793
A
A
12
11
3.276
13.405
3.003
-0.191
AA_DA8DC9:DG11DT12_AA
8
-11.582
18.830
32.934
-1.809
-6.001
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2000-02-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2000-01-26
REL
The sequence is formed by adding CTG loop to ends of ds(GCGCGAAA:TTTCGCGC), which occurs naturally in humans.
sample
Solvent suppression was realized by WATERGATE method.
all calculated structures submitted
2
2
2D NOESY
2D NOESY
150mM NaCl
7.0
ambient
300
K
Initial structure for model 1 is A-DNA, while that for model 2 is B-DNA. First we applied 640ps free MD with 18 Na+ counterions and 2789 waters for A-DNA and 2303 waters for B-DNA. Then we applied 4 cycles of IRMA with 174 NOE restraints and 19 hydrogen bond restraints
Molecular Dynamics with Particle-Particle Particle-Mesh method; Iterative Relaxation Matrix Approach with generalized order parameters
3.5mM DNA fragment; 50mM phosphate buffer, pH 7.0; 150mM NaCl; 1mM EDTA; 1mM NaN3; 90% H2O, 10% D2O
90% H2O/10% D2O
same as 1 except in D2O
99.96% D2O
Bruker
collection
XwinNMR
1.1
Alexandre Bonvin
iterative matrix relaxation
IRMA
0.1
W.F.van Gunsteren
refinement
GROMOS
96
500
Bruker
DMX
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
A
6
n
6
DA
6
A
A
7
n
7
DA
7
A
A
8
n
8
DA
8
A
C
9
n
9
DC
9
A
T
10
n
10
DT
10
A
G
11
n
11
DG
11
A
T
12
n
12
DT
12
A
T
13
n
13
DT
13
A
T
14
n
14
DT
14
A
C
15
n
15
DC
15
A
G
16
n
16
DG
16
A
C
17
n
17
DC
17
A
G
18
n
18
DG
18
A
C
19
n
19
DC
19
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
5
0.060
SIDE CHAIN
1
A
DA
6
0.059
SIDE CHAIN
1
A
DA
8
0.118
SIDE CHAIN
1
A
DC
9
0.157
SIDE CHAIN
1
A
DG
11
0.187
SIDE CHAIN
1
A
DT
12
0.092
SIDE CHAIN
1
A
DC
19
0.107
SIDE CHAIN
2
A
DA
6
0.082
SIDE CHAIN
2
A
DC
9
0.185
SIDE CHAIN
2
A
DG
11
0.080
SIDE CHAIN
2
A
DT
12
0.086
SIDE CHAIN
2
A
DC
17
0.063
SIDE CHAIN
2
A
DC
19
0.080
SIDE CHAIN
1
-6.46
0.60
125.10
118.64
A
A
A
C6
N1
C2
DG
DG
DG
1
1
1
N
1
9.53
0.50
111.90
121.43
A
A
A
C2
N3
C4
DG
DG
DG
1
1
1
N
1
-9.13
0.50
128.60
119.47
A
A
A
N3
C4
C5
DG
DG
DG
1
1
1
N
1
6.52
0.50
111.50
118.02
A
A
A
C5
C6
N1
DG
DG
DG
1
1
1
N
1
-3.23
0.40
110.80
107.57
A
A
A
C4
C5
N7
DG
DG
DG
1
1
1
N
1
6.98
0.60
126.00
132.98
A
A
A
N3
C4
N9
DG
DG
DG
1
1
1
N
1
7.41
0.90
116.20
123.61
A
A
A
N1
C2
N2
DG
DG
DG
1
1
1
N
1
-4.85
0.70
119.90
115.05
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
1
-9.48
0.60
128.60
119.12
A
A
A
C5
C6
O6
DG
DG
DG
1
1
1
N
1
10.36
1.20
119.70
130.06
A
A
A
C3'
O3'
P
DG
DG
DC
1
1
2
Y
1
-2.69
0.40
120.30
117.61
A
A
A
C6
N1
C2
DC
DC
DC
2
2
2
N
1
3.18
0.50
119.90
123.08
A
A
A
C2
N3
C4
DC
DC
DC
2
2
2
N
1
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
-5.80
0.60
125.10
119.30
A
A
A
C6
N1
C2
DG
DG
DG
3
3
3
N
1
9.29
0.50
111.90
121.19
A
A
A
C2
N3
C4
DG
DG
DG
3
3
3
N
1
-8.43
0.50
128.60
120.17
A
A
A
N3
C4
C5
DG
DG
DG
3
3
3
N
1
6.27
0.50
111.50
117.77
A
A
A
C5
C6
N1
DG
DG
DG
3
3
3
N
1
-3.52
0.40
110.80
107.28
A
A
A
C4
C5
N7
DG
DG
DG
3
3
3
N
1
3.37
0.50
104.30
107.67
A
A
A
C5
N7
C8
DG
DG
DG
3
3
3
N
1
6.53
0.60
126.00
132.53
A
A
A
N3
C4
N9
DG
DG
DG
3
3
3
N
1
7.31
0.90
116.20
123.51
A
A
A
N1
C2
N2
DG
DG
DG
3
3
3
N
1
-4.30
0.70
119.90
115.60
A
A
A
N3
C2
N2
DG
DG
DG
3
3
3
N
1
-9.04
0.60
128.60
119.56
A
A
A
C5
C6
O6
DG
DG
DG
3
3
3
N
1
10.36
1.20
119.70
130.06
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
1
7.58
1.10
109.80
117.38
A
A
A
C5'
C4'
O4'
DC
DC
DC
4
4
4
N
1
-6.99
1.00
110.10
103.11
A
A
A
C1'
O4'
C4'
DC
DC
DC
4
4
4
N
1
3.55
0.30
108.30
111.85
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
3.09
0.50
119.90
122.99
A
A
A
C2
N3
C4
DC
DC
DC
4
4
4
N
1
-2.61
0.40
121.90
119.29
A
A
A
N3
C4
C5
DC
DC
DC
4
4
4
N
1
-5.77
0.60
125.10
119.33
A
A
A
C6
N1
C2
DG
DG
DG
5
5
5
N
1
9.48
0.50
111.90
121.38
A
A
A
C2
N3
C4
DG
DG
DG
5
5
5
N
1
-8.30
0.50
128.60
120.30
A
A
A
N3
C4
C5
DG
DG
DG
5
5
5
N
1
6.50
0.50
111.50
118.00
A
A
A
C5
C6
N1
DG
DG
DG
5
5
5
N
1
-3.05
0.40
110.80
107.75
A
A
A
C4
C5
N7
DG
DG
DG
5
5
5
N
1
3.06
0.50
104.30
107.36
A
A
A
C5
N7
C8
DG
DG
DG
5
5
5
N
1
6.87
0.60
126.00
132.87
A
A
A
N3
C4
N9
DG
DG
DG
5
5
5
N
1
6.12
0.90
116.20
122.32
A
A
A
N1
C2
N2
DG
DG
DG
5
5
5
N
1
-8.29
0.60
128.60
120.31
A
A
A
C5
C6
O6
DG
DG
DG
5
5
5
N
1
-6.44
0.50
129.30
122.86
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
1
9.89
0.50
110.60
120.49
A
A
A
C2
N3
C4
DA
DA
DA
6
6
6
N
1
-8.56
0.70
126.80
118.24
A
A
A
N3
C4
C5
DA
DA
DA
6
6
6
N
1
8.10
0.80
127.40
135.50
A
A
A
N3
C4
N9
DA
DA
DA
6
6
6
N
1
4.85
0.60
118.60
123.45
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
1
-5.66
0.80
123.70
118.04
A
A
A
C5
C6
N6
DA
DA
DA
6
6
6
N
1
-6.53
0.50
129.30
122.77
A
A
A
N1
C2
N3
DA
DA
DA
7
7
7
N
1
9.57
0.50
110.60
120.17
A
A
A
C2
N3
C4
DA
DA
DA
7
7
7
N
1
-8.20
0.70
126.80
118.60
A
A
A
N3
C4
C5
DA
DA
DA
7
7
7
N
1
7.27
0.80
127.40
134.67
A
A
A
N3
C4
N9
DA
DA
DA
7
7
7
N
1
3.88
0.60
118.60
122.48
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
1
-6.60
0.50
129.30
122.70
A
A
A
N1
C2
N3
DA
DA
DA
8
8
8
N
1
9.60
0.50
110.60
120.20
A
A
A
C2
N3
C4
DA
DA
DA
8
8
8
N
1
-8.08
0.70
126.80
118.72
A
A
A
N3
C4
C5
DA
DA
DA
8
8
8
N
1
-3.10
0.50
113.80
110.70
A
A
A
N7
C8
N9
DA
DA
DA
8
8
8
N
1
7.00
0.80
127.40
134.40
A
A
A
N3
C4
N9
DA
DA
DA
8
8
8
N
1
5.34
0.30
108.30
113.64
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
-5.42
0.70
121.90
116.48
A
A
A
N3
C2
O2
DC
DC
DC
9
9
9
N
1
8.76
0.30
108.30
117.06
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
5.48
0.60
114.60
120.08
A
A
A
N1
C2
N3
DT
DT
DT
10
10
10
N
1
-6.63
0.60
127.20
120.57
A
A
A
C2
N3
C4
DT
DT
DT
10
10
10
N
1
4.26
0.60
115.20
119.46
A
A
A
N3
C4
C5
DT
DT
DT
10
10
10
N
1
-5.53
0.70
124.90
119.37
A
A
A
C5
C4
O4
DT
DT
DT
10
10
10
N
1
-6.46
0.60
125.10
118.64
A
A
A
C6
N1
C2
DG
DG
DG
11
11
11
N
1
8.94
0.50
111.90
120.84
A
A
A
C2
N3
C4
DG
DG
DG
11
11
11
N
1
-8.92
0.50
128.60
119.68
A
A
A
N3
C4
C5
DG
DG
DG
11
11
11
N
1
6.14
0.50
111.50
117.64
A
A
A
C5
C6
N1
DG
DG
DG
11
11
11
N
1
-3.39
0.40
110.80
107.41
A
A
A
C4
C5
N7
DG
DG
DG
11
11
11
N
1
5.80
0.60
126.00
131.80
A
A
A
N3
C4
N9
DG
DG
DG
11
11
11
N
1
7.75
0.90
116.20
123.95
A
A
A
N1
C2
N2
DG
DG
DG
11
11
11
N
1
-5.58
0.70
119.90
114.32
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
1
-9.72
0.60
128.60
118.88
A
A
A
C5
C6
O6
DG
DG
DG
11
11
11
N
1
3.90
0.30
108.30
112.20
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
5.22
0.60
114.60
119.82
A
A
A
N1
C2
N3
DT
DT
DT
12
12
12
N
1
-6.63
0.60
127.20
120.57
A
A
A
C2
N3
C4
DT
DT
DT
12
12
12
N
1
4.47
0.60
115.20
119.67
A
A
A
N3
C4
C5
DT
DT
DT
12
12
12
N
1
-5.07
0.70
124.90
119.83
A
A
A
C5
C4
O4
DT
DT
DT
12
12
12
N
1
4.35
0.30
108.30
112.65
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
5.55
0.60
114.60
120.15
A
A
A
N1
C2
N3
DT
DT
DT
13
13
13
N
1
-6.59
0.60
127.20
120.61
A
A
A
C2
N3
C4
DT
DT
DT
13
13
13
N
1
3.91
0.60
115.20
119.11
A
A
A
N3
C4
C5
DT
DT
DT
13
13
13
N
1
-3.65
0.60
122.90
119.25
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
1
5.55
0.60
114.60
120.15
A
A
A
N1
C2
N3
DT
DT
DT
14
14
14
N
1
-6.95
0.60
127.20
120.25
A
A
A
C2
N3
C4
DT
DT
DT
14
14
14
N
1
4.29
0.60
115.20
119.49
A
A
A
N3
C4
C5
DT
DT
DT
14
14
14
N
1
-5.39
0.70
124.90
119.51
A
A
A
C5
C4
O4
DT
DT
DT
14
14
14
N
1
-2.54
0.40
121.90
119.36
A
A
A
N3
C4
C5
DC
DC
DC
15
15
15
N
1
-6.23
0.60
125.10
118.87
A
A
A
C6
N1
C2
DG
DG
DG
16
16
16
N
1
9.54
0.50
111.90
121.44
A
A
A
C2
N3
C4
DG
DG
DG
16
16
16
N
1
-8.68
0.50
128.60
119.92
A
A
A
N3
C4
C5
DG
DG
DG
16
16
16
N
1
6.68
0.50
111.50
118.18
A
A
A
C5
C6
N1
DG
DG
DG
16
16
16
N
1
-2.93
0.40
110.80
107.87
A
A
A
C4
C5
N7
DG
DG
DG
16
16
16
N
1
7.16
0.60
126.00
133.16
A
A
A
N3
C4
N9
DG
DG
DG
16
16
16
N
1
7.34
0.90
116.20
123.54
A
A
A
N1
C2
N2
DG
DG
DG
16
16
16
N
1
-4.47
0.70
119.90
115.43
A
A
A
N3
C2
N2
DG
DG
DG
16
16
16
N
1
-10.20
0.60
128.60
118.40
A
A
A
C5
C6
O6
DG
DG
DG
16
16
16
N
1
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
-5.86
0.60
125.10
119.24
A
A
A
C6
N1
C2
DG
DG
DG
18
18
18
N
1
9.02
0.50
111.90
120.92
A
A
A
C2
N3
C4
DG
DG
DG
18
18
18
N
1
-8.54
0.50
128.60
120.06
A
A
A
N3
C4
C5
DG
DG
DG
18
18
18
N
1
6.01
0.50
111.50
117.51
A
A
A
C5
C6
N1
DG
DG
DG
18
18
18
N
1
-3.46
0.40
110.80
107.34
A
A
A
C4
C5
N7
DG
DG
DG
18
18
18
N
1
3.11
0.50
104.30
107.41
A
A
A
C5
N7
C8
DG
DG
DG
18
18
18
N
1
6.57
0.60
126.00
132.57
A
A
A
N3
C4
N9
DG
DG
DG
18
18
18
N
1
6.76
0.90
116.20
122.96
A
A
A
N1
C2
N2
DG
DG
DG
18
18
18
N
1
-8.79
0.60
128.60
119.81
A
A
A
C5
C6
O6
DG
DG
DG
18
18
18
N
1
5.20
0.30
108.30
113.50
A
A
A
O4'
C1'
N1
DC
DC
DC
19
19
19
N
1
-2.62
0.40
121.90
119.28
A
A
A
N3
C4
C5
DC
DC
DC
19
19
19
N
1
-4.26
0.70
121.90
117.64
A
A
A
N3
C2
O2
DC
DC
DC
19
19
19
N
2
-5.84
0.60
125.10
119.26
A
A
A
C6
N1
C2
DG
DG
DG
1
1
1
N
2
9.27
0.50
111.90
121.17
A
A
A
C2
N3
C4
DG
DG
DG
1
1
1
N
2
-8.51
0.50
128.60
120.09
A
A
A
N3
C4
C5
DG
DG
DG
1
1
1
N
2
6.17
0.50
111.50
117.67
A
A
A
C5
C6
N1
DG
DG
DG
1
1
1
N
2
-3.20
0.40
110.80
107.60
A
A
A
C4
C5
N7
DG
DG
DG
1
1
1
N
2
6.71
0.60
126.00
132.71
A
A
A
N3
C4
N9
DG
DG
DG
1
1
1
N
2
7.48
0.90
116.20
123.68
A
A
A
N1
C2
N2
DG
DG
DG
1
1
1
N
2
-4.56
0.70
119.90
115.34
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
2
-9.43
0.60
128.60
119.17
A
A
A
C5
C6
O6
DG
DG
DG
1
1
1
N
2
-2.84
0.40
120.30
117.46
A
A
A
C6
N1
C2
DC
DC
DC
2
2
2
N
2
-5.83
0.60
125.10
119.27
A
A
A
C6
N1
C2
DG
DG
DG
3
3
3
N
2
9.28
0.50
111.90
121.18
A
A
A
C2
N3
C4
DG
DG
DG
3
3
3
N
2
-8.53
0.50
128.60
120.07
A
A
A
N3
C4
C5
DG
DG
DG
3
3
3
N
2
6.22
0.50
111.50
117.72
A
A
A
C5
C6
N1
DG
DG
DG
3
3
3
N
2
-3.24
0.40
110.80
107.56
A
A
A
C4
C5
N7
DG
DG
DG
3
3
3
N
2
6.62
0.60
126.00
132.62
A
A
A
N3
C4
N9
DG
DG
DG
3
3
3
N
2
7.03
0.90
116.20
123.23
A
A
A
N1
C2
N2
DG
DG
DG
3
3
3
N
2
-9.17
0.60
128.60
119.43
A
A
A
C5
C6
O6
DG
DG
DG
3
3
3
N
2
9.92
1.20
119.70
129.62
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
2
-2.70
0.40
120.30
117.60
A
A
A
C6
N1
C2
DC
DC
DC
4
4
4
N
2
-2.58
0.40
121.90
119.32
A
A
A
N3
C4
C5
DC
DC
DC
4
4
4
N
2
-4.45
0.70
121.90
117.45
A
A
A
N3
C2
O2
DC
DC
DC
4
4
4
N
2
12.58
1.60
120.90
133.48
A
A
A
P
O5'
C5'
DG
DG
DG
5
5
5
N
2
-5.60
0.60
125.10
119.50
A
A
A
C6
N1
C2
DG
DG
DG
5
5
5
N
2
9.34
0.50
111.90
121.24
A
A
A
C2
N3
C4
DG
DG
DG
5
5
5
N
2
-8.31
0.50
128.60
120.29
A
A
A
N3
C4
C5
DG
DG
DG
5
5
5
N
2
6.26
0.50
111.50
117.76
A
A
A
C5
C6
N1
DG
DG
DG
5
5
5
N
2
-2.89
0.40
110.80
107.91
A
A
A
C4
C5
N7
DG
DG
DG
5
5
5
N
2
6.82
0.60
126.00
132.82
A
A
A
N3
C4
N9
DG
DG
DG
5
5
5
N
2
6.90
0.90
116.20
123.10
A
A
A
N1
C2
N2
DG
DG
DG
5
5
5
N
2
-9.24
0.60
128.60
119.36
A
A
A
C5
C6
O6
DG
DG
DG
5
5
5
N
2
7.49
1.20
119.70
127.19
A
A
A
C3'
O3'
P
DG
DG
DA
5
5
6
Y
2
-5.85
0.50
129.30
123.45
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
2
9.72
0.50
110.60
120.32
A
A
A
C2
N3
C4
DA
DA
DA
6
6
6
N
2
-8.78
0.70
126.80
118.02
A
A
A
N3
C4
C5
DA
DA
DA
6
6
6
N
2
8.36
0.80
127.40
135.76
A
A
A
N3
C4
N9
DA
DA
DA
6
6
6
N
2
5.37
0.60
118.60
123.97
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
2
-6.39
0.80
123.70
117.31
A
A
A
C5
C6
N6
DA
DA
DA
6
6
6
N
2
-6.32
0.50
129.30
122.98
A
A
A
N1
C2
N3
DA
DA
DA
7
7
7
N
2
9.88
0.50
110.60
120.48
A
A
A
C2
N3
C4
DA
DA
DA
7
7
7
N
2
-8.65
0.70
126.80
118.15
A
A
A
N3
C4
C5
DA
DA
DA
7
7
7
N
2
7.88
0.80
127.40
135.28
A
A
A
N3
C4
N9
DA
DA
DA
7
7
7
N
2
4.59
0.60
118.60
123.19
A
A
A
N1
C6
N6
DA
DA
DA
7
7
7
N
2
-5.25
0.80
123.70
118.45
A
A
A
C5
C6
N6
DA
DA
DA
7
7
7
N
2
-6.52
0.50
129.30
122.78
A
A
A
N1
C2
N3
DA
DA
DA
8
8
8
N
2
9.74
0.50
110.60
120.34
A
A
A
C2
N3
C4
DA
DA
DA
8
8
8
N
2
-8.29
0.70
126.80
118.51
A
A
A
N3
C4
C5
DA
DA
DA
8
8
8
N
2
7.59
0.80
127.40
134.99
A
A
A
N3
C4
N9
DA
DA
DA
8
8
8
N
2
3.71
0.60
118.60
122.31
A
A
A
N1
C6
N6
DA
DA
DA
8
8
8
N
2
6.88
1.10
109.80
116.68
A
A
A
C5'
C4'
O4'
DT
DT
DT
10
10
10
N
2
-6.84
1.00
110.10
103.26
A
A
A
C1'
O4'
C4'
DT
DT
DT
10
10
10
N
2
9.99
0.30
108.30
118.29
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
2
-3.23
0.50
121.30
118.07
A
A
A
C6
N1
C2
DT
DT
DT
10
10
10
N
2
5.26
0.60
114.60
119.86
A
A
A
N1
C2
N3
DT
DT
DT
10
10
10
N
2
-6.14
0.60
127.20
121.06
A
A
A
C2
N3
C4
DT
DT
DT
10
10
10
N
2
4.28
0.60
115.20
119.48
A
A
A
N3
C4
C5
DT
DT
DT
10
10
10
N
2
-5.63
0.60
122.30
116.67
A
A
A
N3
C2
O2
DT
DT
DT
10
10
10
N
2
-6.31
0.70
124.90
118.59
A
A
A
C5
C4
O4
DT
DT
DT
10
10
10
N
2
8.17
1.20
119.70
127.87
A
A
A
C3'
O3'
P
DT
DT
DG
10
10
11
Y
2
-5.05
0.60
125.10
120.05
A
A
A
C6
N1
C2
DG
DG
DG
11
11
11
N
2
8.76
0.50
111.90
120.66
A
A
A
C2
N3
C4
DG
DG
DG
11
11
11
N
2
-8.06
0.50
128.60
120.54
A
A
A
N3
C4
C5
DG
DG
DG
11
11
11
N
2
5.48
0.50
111.50
116.98
A
A
A
C5
C6
N1
DG
DG
DG
11
11
11
N
2
-2.41
0.40
110.80
108.39
A
A
A
C4
C5
N7
DG
DG
DG
11
11
11
N
2
6.06
0.60
126.00
132.06
A
A
A
N3
C4
N9
DG
DG
DG
11
11
11
N
2
8.24
0.90
116.20
124.44
A
A
A
N1
C2
N2
DG
DG
DG
11
11
11
N
2
-5.14
0.70
119.90
114.76
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
2
3.96
0.60
119.90
123.86
A
A
A
N1
C6
O6
DG
DG
DG
11
11
11
N
2
-9.53
0.60
128.60
119.07
A
A
A
C5
C6
O6
DG
DG
DG
11
11
11
N
2
-6.11
1.00
110.10
103.99
A
A
A
C1'
O4'
C4'
DT
DT
DT
12
12
12
N
2
4.29
0.30
108.30
112.59
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
5.67
0.60
114.60
120.27
A
A
A
N1
C2
N3
DT
DT
DT
12
12
12
N
2
-7.03
0.60
127.20
120.17
A
A
A
C2
N3
C4
DT
DT
DT
12
12
12
N
2
4.38
0.60
115.20
119.58
A
A
A
N3
C4
C5
DT
DT
DT
12
12
12
N
2
-4.53
0.70
124.90
120.37
A
A
A
C5
C4
O4
DT
DT
DT
12
12
12
N
2
10.42
1.20
119.70
130.12
A
A
A
C3'
O3'
P
DT
DT
DT
12
12
13
Y
2
3.58
0.30
108.30
111.88
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
2
5.47
0.60
114.60
120.07
A
A
A
N1
C2
N3
DT
DT
DT
13
13
13
N
2
-6.84
0.60
127.20
120.36
A
A
A
C2
N3
C4
DT
DT
DT
13
13
13
N
2
4.34
0.60
115.20
119.54
A
A
A
N3
C4
C5
DT
DT
DT
13
13
13
N
2
-5.61
0.70
124.90
119.29
A
A
A
C5
C4
O4
DT
DT
DT
13
13
13
N
2
8.82
1.20
119.70
128.52
A
A
A
C3'
O3'
P
DT
DT
DT
13
13
14
Y
2
5.45
0.60
114.60
120.05
A
A
A
N1
C2
N3
DT
DT
DT
14
14
14
N
2
-7.39
0.60
127.20
119.81
A
A
A
C2
N3
C4
DT
DT
DT
14
14
14
N
2
4.87
0.60
115.20
120.07
A
A
A
N3
C4
C5
DT
DT
DT
14
14
14
N
2
-5.99
0.70
124.90
118.91
A
A
A
C5
C4
O4
DT
DT
DT
14
14
14
N
2
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
-2.55
0.40
120.30
117.75
A
A
A
C6
N1
C2
DC
DC
DC
15
15
15
N
2
-2.76
0.40
121.90
119.14
A
A
A
N3
C4
C5
DC
DC
DC
15
15
15
N
2
9.40
1.20
119.70
129.10
A
A
A
C3'
O3'
P
DC
DC
DG
15
15
16
Y
2
-6.30
0.60
125.10
118.80
A
A
A
C6
N1
C2
DG
DG
DG
16
16
16
N
2
9.69
0.50
111.90
121.59
A
A
A
C2
N3
C4
DG
DG
DG
16
16
16
N
2
-9.03
0.50
128.60
119.57
A
A
A
N3
C4
C5
DG
DG
DG
16
16
16
N
2
6.64
0.50
111.50
118.14
A
A
A
C5
C6
N1
DG
DG
DG
16
16
16
N
2
-2.99
0.40
110.80
107.81
A
A
A
C4
C5
N7
DG
DG
DG
16
16
16
N
2
7.27
0.60
126.00
133.27
A
A
A
N3
C4
N9
DG
DG
DG
16
16
16
N
2
6.29
0.90
116.20
122.49
A
A
A
N1
C2
N2
DG
DG
DG
16
16
16
N
2
-9.95
0.60
128.60
118.65
A
A
A
C5
C6
O6
DG
DG
DG
16
16
16
N
2
-2.67
0.40
120.30
117.63
A
A
A
C6
N1
C2
DC
DC
DC
17
17
17
N
2
-6.06
0.60
125.10
119.04
A
A
A
C6
N1
C2
DG
DG
DG
18
18
18
N
2
9.37
0.50
111.90
121.27
A
A
A
C2
N3
C4
DG
DG
DG
18
18
18
N
2
-8.69
0.50
128.60
119.91
A
A
A
N3
C4
C5
DG
DG
DG
18
18
18
N
2
6.32
0.50
111.50
117.82
A
A
A
C5
C6
N1
DG
DG
DG
18
18
18
N
2
-3.06
0.40
110.80
107.74
A
A
A
C4
C5
N7
DG
DG
DG
18
18
18
N
2
7.02
0.60
126.00
133.02
A
A
A
N3
C4
N9
DG
DG
DG
18
18
18
N
2
6.27
0.90
116.20
122.47
A
A
A
N1
C2
N2
DG
DG
DG
18
18
18
N
2
-9.21
0.60
128.60
119.39
A
A
A
C5
C6
O6
DG
DG
DG
18
18
18
N
2
4.71
0.30
108.30
113.01
A
A
A
O4'
C1'
N1
DC
DC
DC
19
19
19
N
2
-2.58
0.40
121.90
119.32
A
A
A
N3
C4
C5
DC
DC
DC
19
19
19
N
1
A
A
C5
N7
DG
DG
1
1
-0.076
0.006
1.388
1.312
N
1
A
A
C8
N9
DG
DG
1
1
-0.061
0.007
1.374
1.313
N
1
A
A
N9
C4
DG
DG
1
1
-0.060
0.008
1.375
1.315
N
1
A
A
C5
N7
DG
DG
3
3
-0.068
0.006
1.388
1.320
N
1
A
A
C8
N9
DG
DG
3
3
-0.053
0.007
1.374
1.321
N
1
A
A
N9
C4
DG
DG
3
3
-0.054
0.008
1.375
1.321
N
1
A
A
O3'
P
DG
DC
3
4
-0.090
0.012
1.607
1.517
Y
1
A
A
P
OP1
DC
DC
4
4
-0.109
0.017
1.485
1.376
N
1
A
A
C5
N7
DG
DG
5
5
-0.066
0.006
1.388
1.322
N
1
A
A
C8
N9
DG
DG
5
5
-0.053
0.007
1.374
1.321
N
1
A
A
N9
C4
DG
DG
5
5
-0.052
0.008
1.375
1.323
N
1
A
A
C5
N7
DA
DA
6
6
-0.069
0.006
1.388
1.319
N
1
A
A
C8
N9
DA
DA
6
6
-0.053
0.008
1.373
1.320
N
1
A
A
N9
C4
DA
DA
6
6
-0.054
0.006
1.374
1.320
N
1
A
A
C5
N7
DA
DA
7
7
-0.069
0.006
1.388
1.319
N
1
A
A
C8
N9
DA
DA
7
7
-0.051
0.008
1.373
1.322
N
1
A
A
N9
C4
DA
DA
7
7
-0.053
0.006
1.374
1.321
N
1
A
A
C5
N7
DA
DA
8
8
-0.067
0.006
1.388
1.321
N
1
A
A
C8
N9
DA
DA
8
8
-0.051
0.008
1.373
1.322
N
1
A
A
N9
C4
DA
DA
8
8
-0.051
0.006
1.374
1.323
N
1
A
A
C4
C5
DT
DT
10
10
-0.072
0.009
1.445
1.373
N
1
A
A
C5
N7
DG
DG
11
11
-0.070
0.006
1.388
1.318
N
1
A
A
C8
N9
DG
DG
11
11
-0.053
0.007
1.374
1.321
N
1
A
A
N9
C4
DG
DG
11
11
-0.058
0.008
1.375
1.317
N
1
A
A
C4
C5
DT
DT
12
12
-0.070
0.009
1.445
1.375
N
1
A
A
C4
C5
DT
DT
13
13
-0.069
0.009
1.445
1.376
N
1
A
A
C4
C5
DT
DT
14
14
-0.066
0.009
1.445
1.379
N
1
A
A
C4
C5
DC
DC
15
15
-0.051
0.008
1.425
1.374
N
1
A
A
C5
N7
DG
DG
16
16
-0.070
0.006
1.388
1.318
N
1
A
A
C8
N9
DG
DG
16
16
-0.058
0.007
1.374
1.316
N
1
A
A
N9
C4
DG
DG
16
16
-0.055
0.008
1.375
1.320
N
1
A
A
C5
N7
DG
DG
18
18
-0.072
0.006
1.388
1.316
N
1
A
A
C8
N9
DG
DG
18
18
-0.057
0.007
1.374
1.317
N
1
A
A
N9
C4
DG
DG
18
18
-0.059
0.008
1.375
1.316
N
1
A
A
C4
C5
DC
DC
19
19
-0.055
0.008
1.425
1.370
N
2
A
A
C5
N7
DG
DG
1
1
-0.072
0.006
1.388
1.316
N
2
A
A
C8
N9
DG
DG
1
1
-0.057
0.007
1.374
1.317
N
2
A
A
N9
C4
DG
DG
1
1
-0.058
0.008
1.375
1.317
N
2
A
A
C4
C5
DC
DC
2
2
-0.049
0.008
1.425
1.376
N
2
A
A
C5
N7
DG
DG
3
3
-0.069
0.006
1.388
1.319
N
2
A
A
C8
N9
DG
DG
3
3
-0.054
0.007
1.374
1.320
N
2
A
A
N9
C4
DG
DG
3
3
-0.054
0.008
1.375
1.321
N
2
A
A
O3'
P
DG
DC
3
4
-0.096
0.012
1.607
1.511
Y
2
A
A
P
OP1
DG
DG
5
5
-0.125
0.017
1.485
1.360
N
2
A
A
P
OP2
DG
DG
5
5
-0.118
0.017
1.485
1.367
N
2
A
A
P
O5'
DG
DG
5
5
-0.127
0.010
1.593
1.466
N
2
A
A
C5
N7
DG
DG
5
5
-0.068
0.006
1.388
1.320
N
2
A
A
C8
N9
DG
DG
5
5
-0.053
0.007
1.374
1.321
N
2
A
A
N9
C4
DG
DG
5
5
-0.052
0.008
1.375
1.323
N
2
A
A
C5
N7
DA
DA
6
6
-0.068
0.006
1.388
1.320
N
2
A
A
C8
N9
DA
DA
6
6
-0.052
0.008
1.373
1.321
N
2
A
A
N9
C4
DA
DA
6
6
-0.054
0.006
1.374
1.320
N
2
A
A
C5
N7
DA
DA
7
7
-0.071
0.006
1.388
1.317
N
2
A
A
C8
N9
DA
DA
7
7
-0.054
0.008
1.373
1.319
N
2
A
A
N9
C4
DA
DA
7
7
-0.058
0.006
1.374
1.316
N
2
A
A
C5
N7
DA
DA
8
8
-0.068
0.006
1.388
1.320
N
2
A
A
C8
N9
DA
DA
8
8
-0.050
0.008
1.373
1.323
N
2
A
A
N9
C4
DA
DA
8
8
-0.053
0.006
1.374
1.321
N
2
A
A
C4
C5
DC
DC
9
9
-0.052
0.008
1.425
1.373
N
2
A
A
C4
C5
DT
DT
10
10
-0.082
0.009
1.445
1.363
N
2
A
A
C5'
C4'
DG
DG
11
11
-0.085
0.011
1.509
1.424
N
2
A
A
O4'
C4'
DG
DG
11
11
-0.090
0.010
1.446
1.356
N
2
A
A
C5
N7
DG
DG
11
11
-0.072
0.006
1.388
1.316
N
2
A
A
C8
N9
DG
DG
11
11
-0.056
0.007
1.374
1.318
N
2
A
A
N9
C4
DG
DG
11
11
-0.058
0.008
1.375
1.317
N
2
A
A
C4
C5
DT
DT
12
12
-0.065
0.009
1.445
1.380
N
2
A
A
C4
C5
DT
DT
13
13
-0.073
0.009
1.445
1.372
N
2
A
A
C4
C5
DT
DT
14
14
-0.067
0.009
1.445
1.378
N
2
A
A
C4
C5
DC
DC
15
15
-0.050
0.008
1.425
1.375
N
2
A
A
O3'
P
DC
DG
15
16
-0.085
0.012
1.607
1.522
Y
2
A
A
C5
N7
DG
DG
16
16
-0.068
0.006
1.388
1.320
N
2
A
A
C8
N9
DG
DG
16
16
-0.055
0.007
1.374
1.319
N
2
A
A
N9
C4
DG
DG
16
16
-0.056
0.008
1.375
1.319
N
2
A
A
C5
N7
DG
DG
18
18
-0.072
0.006
1.388
1.316
N
2
A
A
C8
N9
DG
DG
18
18
-0.056
0.007
1.374
1.318
N
2
A
A
N9
C4
DG
DG
18
18
-0.057
0.008
1.375
1.318
N
2
A
A
C4
C5
DC
DC
19
19
-0.049
0.008
1.425
1.376
N
SOLUTION STRUCTURE OF E2F BINDING DNA FRAGMENT GCGCGAAAC-T-GTTTCGCGC
1
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
19
A
N3
DC
19
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
19
A
O2
DC
19
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
19
A
N4
DC
19
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
18
A
N1
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
18
A
O6
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
18
A
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
A
DC
17
A
N3
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
A
DC
17
A
O2
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
A
DC
17
A
N4
DC
17
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
A
DG
16
A
N1
DG
16
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
A
DG
16
A
O6
DG
16
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
A
DG
16
A
N2
DG
16
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
15
A
N3
DC
15
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
15
A
O2
DC
15
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
15
A
N4
DC
15
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
A
DT
14
A
N3
DT
14
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
A
DT
14
A
O4
DT
14
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
A
DT
13
A
N3
DT
13
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
A
DT
13
A
O4
DT
13
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
A
DT
12
A
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
A
DT
12
A
O4
DT
12
1_555
hydrog
DC-DG PAIR
A
DC
9
A
O2
DC
9
1_555
A
DG
11
A
N1
DG
11
1_555
DNA
double strands, loop, DNA
1ECU
PDB
1
1ECU
1
19
1ECU
1
19
1ECU
A
1
1
19
1
P 1