0.039216 0.000000 0.000000 0.000000 0.025126 0.000000 0.000000 0.000000 0.015038 0.00000 0.00000 0.00000 Chatake, T. Hikima, T. Ono, A. Ueno, Y. Matsuda, A. Takenaka, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.5 39.8 66.5 C11 H16 N5 O7 P 361.248 n N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N O N 24 N C N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N O N 42 N P N 43 N O N 44 N O N 45 N O N 46 N C N 47 R C N 48 N O N 49 S C N 50 N O N 51 N C N 52 R C Y 53 N N Y 54 N C Y 55 N N Y 56 N C Y 57 N C N 58 N N Y 59 N N Y 60 N C Y 61 N N Y 62 N C N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N O N 78 N P N 79 N O N 80 N O N 81 N O N 82 N C N 83 R C N 84 N O N 85 S C N 86 N O N 87 N C N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N O N 166 N C N 167 N C N 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N O N 185 N H N 186 N H N 187 N MG N 188 N N N 189 N C N 190 N C N 191 N C N 192 N N N 193 N C N 194 N C N 195 N C N 196 N C N 197 N N N 198 N C N 199 N C N 200 N C N 201 N N N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N doub Y 30 N sing N 31 N sing Y 32 N sing N 33 N sing N 34 N sing Y 35 N doub Y 36 N sing N 37 N sing Y 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing Y 66 N sing Y 67 N sing Y 68 N doub N 69 N sing Y 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N doub N 75 N sing N 76 N sing Y 77 N sing Y 78 N doub N 79 N sing Y 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 294 1223 1230 10.1006/jmbi.1999.3304 10600380 Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. 1999 10.2210/pdb1edr/pdb pdb_00001edr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 110 1 DIFFRACTOMETER 1999-04-17 WEISSENBERG IMAGE PLATE 1999-06-20 SAKABE'S WEISSSENBERG CAMERA SINGLE WAVELENGTH M x-ray 1 SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL-18B Photon Factory 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B BL-18B Photon Factory 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 3693.418 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3' 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 126 nat water no yes (DC)(DG)(DC)(DG)(A47)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2 2.21 44.26 VAPOR DIFFUSION, HANGING DROP 7.0 MPD, MAGNESIUM ACETATE, SPERMINE TETRAHYDROCHLORIDE, NACL, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K 277.0 MAGNESIUM ACETATE 1 SPERMINE TETRAHYDROCHLORIDE 1 NACL 1 SODIUM CACODYLATE 1 MPD 1 MPD 2 5.996 1 19 A 1 B 24 0.881 A_DC1:DG24_B 1 -17.868 0.552 0.134 -0.138 7.137 1 19 A 2 B 23 -2.224 A_DG2:DC23_B 2 -12.087 -0.201 0.485 -0.183 -7.877 1 19 A 3 B 22 0.694 A_DC3:DG22_B 3 -5.354 0.256 0.262 -0.078 8.527 1 19 A 4 B 21 2.250 A_DG4:DC21_B 4 -6.033 -0.370 -0.041 -0.044 0.534 1 20 A 5 B 20 2.155 A_A475:DT20_B 5 -16.098 -0.161 -0.023 -0.131 1.170 1 20 A 6 B 19 5.244 A_DA6:DT19_B 6 -15.347 0.066 0.185 -0.063 -1.445 1 20 A 7 B 18 3.530 A_DT7:DA18_B 7 -17.084 -0.034 0.126 -0.114 1.181 1 20 A 8 B 17 2.720 A_DT8:A4717_B 8 -14.889 0.044 -0.130 -0.148 -12.575 1 19 A 9 B 16 1.732 A_DC9:DG16_B 9 -5.083 0.394 0.161 -0.014 9.167 1 19 A 10 B 15 2.813 A_DG10:DC15_B 10 -6.786 -0.206 0.205 -0.083 7.095 1 19 A 11 B 14 -1.786 A_DC11:DG14_B 11 -19.530 0.058 0.042 -0.082 0.916 1 19 A 12 B 13 -0.059 A_DG12:DC13_B 12 -11.140 -0.371 0.227 -0.052 3.184 33.718 A A 1 2 10.665 B B 24 23 3.234 6.144 -0.040 0.065 AA_DC1DG2:DC23DG24_BB 1 -3.225 5.598 33.016 -0.878 -0.452 3.616 44.121 A A 2 3 -9.445 B B 23 22 3.715 -7.066 0.501 0.445 AA_DG2DC3:DG22DC23_BB 2 1.313 -1.755 43.560 1.340 -0.529 2.914 26.970 A A 3 4 23.578 B B 22 21 2.996 10.695 -0.211 0.456 AA_DC3DG4:DC21DG22_BB 3 1.895 -4.178 24.723 -1.602 0.909 3.536 38.477 A A 4 5 -0.538 B B 21 20 3.534 -0.354 -0.158 -0.344 AA_DG4A475:DT20DC21_BB 4 0.154 -0.234 38.475 -0.475 0.260 3.188 37.433 A A 5 6 -1.009 B B 20 19 3.189 -0.647 0.063 -0.391 AA_A475DA6:DT19DT20_BB 5 -1.850 2.885 37.384 -0.526 -0.335 3.272 30.885 A A 6 7 -2.904 B B 19 18 3.244 -1.546 -0.087 -0.736 AA_DA6DT7:DA18DT19_BB 6 1.006 -1.891 30.831 -1.082 0.359 3.143 36.160 A A 7 8 -2.066 B B 18 17 3.137 -1.282 -0.039 -0.407 AA_DT7DT8:A4717DA18_BB 7 1.840 -2.966 36.092 -0.481 0.312 3.696 41.147 A A 8 9 -6.861 B B 17 16 3.684 -4.810 -0.017 -0.340 AA_DT8DC9:DG16A4717_BB 8 -1.816 2.589 40.838 0.106 -0.198 2.941 24.927 A A 9 10 12.999 B B 16 15 2.910 5.565 0.507 0.506 AA_DC9DG10:DC15DG16_BB 9 -0.420 0.981 24.304 -0.337 -1.289 3.207 44.576 A A 10 11 -15.787 B B 15 14 3.420 -11.841 -1.348 0.623 AA_DG10DC11:DG14DC15_BB 10 -2.080 2.773 43.004 1.945 1.580 3.381 33.126 A A 11 12 12.217 B B 14 13 3.428 6.913 0.100 0.177 AA_DC11DG12:DC13DG14_BB 11 -1.966 3.474 32.359 -0.915 -0.525 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-02-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BD0010 IS THE SAME DNA DODECAMER AT 2.0 ANGSTROM RCSB Y RCSB 2000-01-28 REL MG MAGNESIUM ION SPM SPERMINE HOH water MO6 26 2 MG MG 26 A SPM 25 3 SPM SPM 25 B HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 30 4 HOH HOH 30 A HOH 32 4 HOH HOH 32 A HOH 35 4 HOH HOH 35 A HOH 37 4 HOH HOH 37 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 50 4 HOH HOH 50 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 54 4 HOH HOH 54 A HOH 58 4 HOH HOH 58 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 69 4 HOH HOH 69 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 74 4 HOH HOH 74 A HOH 78 4 HOH HOH 78 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 88 4 HOH HOH 88 A HOH 91 4 HOH HOH 91 A HOH 94 4 HOH HOH 94 A HOH 95 4 HOH HOH 95 A HOH 101 4 HOH HOH 101 A HOH 103 4 HOH HOH 103 A HOH 105 4 HOH HOH 105 A HOH 107 4 HOH HOH 107 A HOH 113 4 HOH HOH 113 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 122 4 HOH HOH 122 A HOH 125 4 HOH HOH 125 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 141 4 HOH HOH 141 A HOH 144 4 HOH HOH 144 A HOH 146 4 HOH HOH 146 A MO6 26 4 HOH HOH 147 A MO6 26 4 HOH HOH 148 A MO6 26 4 HOH HOH 150 A MO6 26 4 HOH HOH 152 A HOH 29 4 HOH HOH 29 B HOH 31 4 HOH HOH 31 B HOH 33 4 HOH HOH 33 B HOH 34 4 HOH HOH 34 B HOH 36 4 HOH HOH 36 B HOH 38 4 HOH HOH 38 B HOH 43 4 HOH HOH 43 B HOH 46 4 HOH HOH 46 B HOH 49 4 HOH HOH 49 B HOH 51 4 HOH HOH 51 B HOH 55 4 HOH HOH 55 B HOH 56 4 HOH HOH 56 B HOH 57 4 HOH HOH 57 B HOH 59 4 HOH HOH 59 B HOH 60 4 HOH HOH 60 B HOH 61 4 HOH HOH 61 B HOH 62 4 HOH HOH 62 B HOH 66 4 HOH HOH 66 B HOH 67 4 HOH HOH 67 B HOH 68 4 HOH HOH 68 B HOH 70 4 HOH HOH 70 B HOH 71 4 HOH HOH 71 B HOH 75 4 HOH HOH 75 B HOH 76 4 HOH HOH 76 B HOH 77 4 HOH HOH 77 B HOH 79 4 HOH HOH 79 B HOH 80 4 HOH HOH 80 B HOH 81 4 HOH HOH 81 B HOH 86 4 HOH HOH 86 B HOH 87 4 HOH HOH 87 B HOH 89 4 HOH HOH 89 B HOH 90 4 HOH HOH 90 B HOH 92 4 HOH HOH 92 B HOH 93 4 HOH HOH 93 B HOH 96 4 HOH HOH 96 B HOH 97 4 HOH HOH 97 B HOH 98 4 HOH HOH 98 B HOH 99 4 HOH HOH 99 B HOH 100 4 HOH HOH 100 B HOH 102 4 HOH HOH 102 B HOH 104 4 HOH HOH 104 B HOH 106 4 HOH HOH 106 B HOH 108 4 HOH HOH 108 B HOH 109 4 HOH HOH 109 B HOH 110 4 HOH HOH 110 B HOH 111 4 HOH HOH 111 B HOH 112 4 HOH HOH 112 B HOH 114 4 HOH HOH 114 B HOH 117 4 HOH HOH 117 B HOH 118 4 HOH HOH 118 B HOH 119 4 HOH HOH 119 B HOH 120 4 HOH HOH 120 B HOH 121 4 HOH HOH 121 B HOH 123 4 HOH HOH 123 B HOH 124 4 HOH HOH 124 B HOH 126 4 HOH HOH 126 B HOH 127 4 HOH HOH 127 B HOH 128 4 HOH HOH 128 B HOH 129 4 HOH HOH 129 B HOH 130 4 HOH HOH 130 B HOH 131 4 HOH HOH 131 B HOH 132 4 HOH HOH 132 B HOH 133 4 HOH HOH 133 B HOH 137 4 HOH HOH 137 B HOH 138 4 HOH HOH 138 B HOH 139 4 HOH HOH 139 B HOH 140 4 HOH HOH 140 B HOH 142 4 HOH HOH 142 B HOH 143 4 HOH HOH 143 B HOH 145 4 HOH HOH 145 B MO6 26 4 HOH HOH 149 B MO6 26 4 HOH HOH 151 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A +A 5 n 5 A47 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B +A 17 n 5 A47 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 147 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 148 E O HOH 1_555 178.8 A HOH 147 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 150 E O HOH 1_555 91.1 A HOH 148 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 150 E O HOH 1_555 90.0 A HOH 147 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 152 E O HOH 1_555 89.7 A HOH 148 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 152 E O HOH 1_555 90.0 A HOH 150 E O HOH 1_555 A MG 26 C MG MG 1_555 A HOH 152 E O HOH 1_555 89.1 A HOH 147 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 149 F O HOH 1_555 88.3 A HOH 148 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 149 F O HOH 1_555 90.6 A HOH 150 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 149 F O HOH 1_555 179.2 A HOH 152 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 149 F O HOH 1_555 91.4 A HOH 147 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 90.4 A HOH 148 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 89.9 A HOH 150 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 89.7 A HOH 152 E O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 178.8 B HOH 149 F O HOH 1_555 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 89.9 A A47 5 N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE A A47 5 DA B A47 17 N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE B A47 5 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 11 0.079 SIDE CHAIN 0.27 0.211 0.222 0.218 1.60 5.0 690 7190 6836 10 95.1 RANDOM 1 THROUGHOUT 3.0 PARKINSON ET AL. 1.60 5.0 120 631 25 486 0 0.005 1.1 17.9 1.60 100 1EDR 7518 7518 0 0 0.036 1,2 14.4 3.8 79.7 0.085 1.60 1.69 2.6 61.9 phasing AMoRE refinement X-PLOR 3.840 data reduction DENZO data scaling CCP4 (AGROVATA data scaling SCALA MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N covale 1.607 both A DG 4 A O3' DG 4 1_555 A A47 5 A P A47 5 1_555 covale 1.606 one A A47 5 A O3' A47 5 1_555 A DA 6 A P DA 6 1_555 covale 1.607 both B DG 16 B O3' DG 4 1_555 B A47 17 B P A47 5 1_555 covale 1.604 one B A47 17 B O3' A47 5 1_555 B DA 18 B P DA 6 1_555 metalc 2.059 A MG 26 C MG MG 1_555 A HOH 147 E O HOH 1_555 metalc 2.063 A MG 26 C MG MG 1_555 A HOH 148 E O HOH 1_555 metalc 2.043 A MG 26 C MG MG 1_555 A HOH 150 E O HOH 1_555 metalc 2.047 A MG 26 C MG MG 1_555 A HOH 152 E O HOH 1_555 metalc 2.076 A MG 26 C MG MG 1_555 B HOH 149 F O HOH 1_555 metalc 2.040 A MG 26 C MG MG 1_555 B HOH 151 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A A47 5 A N1 A47 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A A47 5 A N6 A47 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B A47 17 B N1 A47 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B A47 17 B N6 A47 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, MODIFIED NUCLEOTIDE, METHOXYADENOSINE, DAMAGED DNA, DNA 1EDR PDB 1 1EDR 1 12 1EDR 1 12 1EDR A 1 1 12 13 24 1EDR 13 24 1EDR B 1 1 12 BINDING SITE FOR RESIDUE SPM B 25 B SPM 25 Software 7 BINDING SITE FOR RESIDUE MG A 26 A MG 26 Software 6 A DG 10 A DG 10 7 1_555 A HOH 48 E HOH 7 1_555 A HOH 103 E HOH 7 1_555 B DG 14 B DG 2 7 1_555 B DC 15 B DC 3 7 1_555 B DC 23 B DC 11 7 2_655 B DG 24 B DG 12 7 2_655 A HOH 147 E HOH 6 1_555 A HOH 148 E HOH 6 1_555 A HOH 150 E HOH 6 1_555 A HOH 152 E HOH 6 1_555 B HOH 149 F HOH 6 1_555 B HOH 151 F HOH 6 1_555 19 orthorhombic P 21 21 21