0.039216
0.000000
0.000000
0.000000
0.025126
0.000000
0.000000
0.000000
0.015038
0.00000
0.00000
0.00000
Chatake, T.
Hikima, T.
Ono, A.
Ueno, Y.
Matsuda, A.
Takenaka, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.5
39.8
66.5
C11 H16 N5 O7 P
361.248
n
N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
O
N
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
O
N
42
N
P
N
43
N
O
N
44
N
O
N
45
N
O
N
46
N
C
N
47
R
C
N
48
N
O
N
49
S
C
N
50
N
O
N
51
N
C
N
52
R
C
Y
53
N
N
Y
54
N
C
Y
55
N
N
Y
56
N
C
Y
57
N
C
N
58
N
N
Y
59
N
N
Y
60
N
C
Y
61
N
N
Y
62
N
C
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
O
N
78
N
P
N
79
N
O
N
80
N
O
N
81
N
O
N
82
N
C
N
83
R
C
N
84
N
O
N
85
S
C
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
N
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
C
N
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
Y
123
N
N
Y
124
N
C
Y
125
N
N
Y
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
C
N
131
N
N
N
132
N
N
Y
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
N
C
N
159
R
C
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
MG
N
188
N
N
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
N
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
N
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
doub
Y
30
N
sing
N
31
N
sing
Y
32
N
sing
N
33
N
sing
N
34
N
sing
Y
35
N
doub
Y
36
N
sing
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
Y
66
N
sing
Y
67
N
sing
Y
68
N
doub
N
69
N
sing
Y
70
N
sing
Y
71
N
sing
Y
72
N
doub
N
73
N
sing
Y
74
N
doub
N
75
N
sing
N
76
N
sing
Y
77
N
sing
Y
78
N
doub
N
79
N
sing
Y
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
Y
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
294
1223
1230
10.1006/jmbi.1999.3304
10600380
Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
1999
10.2210/pdb1edr/pdb
pdb_00001edr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
110
1
DIFFRACTOMETER
1999-04-17
WEISSENBERG
IMAGE PLATE
1999-06-20
SAKABE'S WEISSSENBERG CAMERA
SINGLE WAVELENGTH
M
x-ray
1
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL-18B
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
BL-18B
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
3693.418
5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3'
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
126
nat
water
no
yes
(DC)(DG)(DC)(DG)(A47)(DA)(DT)(DT)(DC)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2
2.21
44.26
VAPOR DIFFUSION, HANGING DROP
7.0
MPD, MAGNESIUM ACETATE, SPERMINE TETRAHYDROCHLORIDE, NACL, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
277.0
MAGNESIUM ACETATE
1
SPERMINE TETRAHYDROCHLORIDE
1
NACL
1
SODIUM CACODYLATE
1
MPD
1
MPD
2
5.996
1
19
A
1
B
24
0.881
A_DC1:DG24_B
1
-17.868
0.552
0.134
-0.138
7.137
1
19
A
2
B
23
-2.224
A_DG2:DC23_B
2
-12.087
-0.201
0.485
-0.183
-7.877
1
19
A
3
B
22
0.694
A_DC3:DG22_B
3
-5.354
0.256
0.262
-0.078
8.527
1
19
A
4
B
21
2.250
A_DG4:DC21_B
4
-6.033
-0.370
-0.041
-0.044
0.534
1
20
A
5
B
20
2.155
A_A475:DT20_B
5
-16.098
-0.161
-0.023
-0.131
1.170
1
20
A
6
B
19
5.244
A_DA6:DT19_B
6
-15.347
0.066
0.185
-0.063
-1.445
1
20
A
7
B
18
3.530
A_DT7:DA18_B
7
-17.084
-0.034
0.126
-0.114
1.181
1
20
A
8
B
17
2.720
A_DT8:A4717_B
8
-14.889
0.044
-0.130
-0.148
-12.575
1
19
A
9
B
16
1.732
A_DC9:DG16_B
9
-5.083
0.394
0.161
-0.014
9.167
1
19
A
10
B
15
2.813
A_DG10:DC15_B
10
-6.786
-0.206
0.205
-0.083
7.095
1
19
A
11
B
14
-1.786
A_DC11:DG14_B
11
-19.530
0.058
0.042
-0.082
0.916
1
19
A
12
B
13
-0.059
A_DG12:DC13_B
12
-11.140
-0.371
0.227
-0.052
3.184
33.718
A
A
1
2
10.665
B
B
24
23
3.234
6.144
-0.040
0.065
AA_DC1DG2:DC23DG24_BB
1
-3.225
5.598
33.016
-0.878
-0.452
3.616
44.121
A
A
2
3
-9.445
B
B
23
22
3.715
-7.066
0.501
0.445
AA_DG2DC3:DG22DC23_BB
2
1.313
-1.755
43.560
1.340
-0.529
2.914
26.970
A
A
3
4
23.578
B
B
22
21
2.996
10.695
-0.211
0.456
AA_DC3DG4:DC21DG22_BB
3
1.895
-4.178
24.723
-1.602
0.909
3.536
38.477
A
A
4
5
-0.538
B
B
21
20
3.534
-0.354
-0.158
-0.344
AA_DG4A475:DT20DC21_BB
4
0.154
-0.234
38.475
-0.475
0.260
3.188
37.433
A
A
5
6
-1.009
B
B
20
19
3.189
-0.647
0.063
-0.391
AA_A475DA6:DT19DT20_BB
5
-1.850
2.885
37.384
-0.526
-0.335
3.272
30.885
A
A
6
7
-2.904
B
B
19
18
3.244
-1.546
-0.087
-0.736
AA_DA6DT7:DA18DT19_BB
6
1.006
-1.891
30.831
-1.082
0.359
3.143
36.160
A
A
7
8
-2.066
B
B
18
17
3.137
-1.282
-0.039
-0.407
AA_DT7DT8:A4717DA18_BB
7
1.840
-2.966
36.092
-0.481
0.312
3.696
41.147
A
A
8
9
-6.861
B
B
17
16
3.684
-4.810
-0.017
-0.340
AA_DT8DC9:DG16A4717_BB
8
-1.816
2.589
40.838
0.106
-0.198
2.941
24.927
A
A
9
10
12.999
B
B
16
15
2.910
5.565
0.507
0.506
AA_DC9DG10:DC15DG16_BB
9
-0.420
0.981
24.304
-0.337
-1.289
3.207
44.576
A
A
10
11
-15.787
B
B
15
14
3.420
-11.841
-1.348
0.623
AA_DG10DC11:DG14DC15_BB
10
-2.080
2.773
43.004
1.945
1.580
3.381
33.126
A
A
11
12
12.217
B
B
14
13
3.428
6.913
0.100
0.177
AA_DC11DG12:DC13DG14_BB
11
-1.966
3.474
32.359
-0.915
-0.525
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-02-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BD0010 IS THE SAME DNA DODECAMER AT 2.0 ANGSTROM
RCSB
Y
RCSB
2000-01-28
REL
MG
MAGNESIUM ION
SPM
SPERMINE
HOH
water
MO6
26
2
MG
MG
26
A
SPM
25
3
SPM
SPM
25
B
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
30
4
HOH
HOH
30
A
HOH
32
4
HOH
HOH
32
A
HOH
35
4
HOH
HOH
35
A
HOH
37
4
HOH
HOH
37
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
50
4
HOH
HOH
50
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
58
4
HOH
HOH
58
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
69
4
HOH
HOH
69
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
78
4
HOH
HOH
78
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
88
4
HOH
HOH
88
A
HOH
91
4
HOH
HOH
91
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
101
4
HOH
HOH
101
A
HOH
103
4
HOH
HOH
103
A
HOH
105
4
HOH
HOH
105
A
HOH
107
4
HOH
HOH
107
A
HOH
113
4
HOH
HOH
113
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
122
4
HOH
HOH
122
A
HOH
125
4
HOH
HOH
125
A
HOH
134
4
HOH
HOH
134
A
HOH
135
4
HOH
HOH
135
A
HOH
136
4
HOH
HOH
136
A
HOH
141
4
HOH
HOH
141
A
HOH
144
4
HOH
HOH
144
A
HOH
146
4
HOH
HOH
146
A
MO6
26
4
HOH
HOH
147
A
MO6
26
4
HOH
HOH
148
A
MO6
26
4
HOH
HOH
150
A
MO6
26
4
HOH
HOH
152
A
HOH
29
4
HOH
HOH
29
B
HOH
31
4
HOH
HOH
31
B
HOH
33
4
HOH
HOH
33
B
HOH
34
4
HOH
HOH
34
B
HOH
36
4
HOH
HOH
36
B
HOH
38
4
HOH
HOH
38
B
HOH
43
4
HOH
HOH
43
B
HOH
46
4
HOH
HOH
46
B
HOH
49
4
HOH
HOH
49
B
HOH
51
4
HOH
HOH
51
B
HOH
55
4
HOH
HOH
55
B
HOH
56
4
HOH
HOH
56
B
HOH
57
4
HOH
HOH
57
B
HOH
59
4
HOH
HOH
59
B
HOH
60
4
HOH
HOH
60
B
HOH
61
4
HOH
HOH
61
B
HOH
62
4
HOH
HOH
62
B
HOH
66
4
HOH
HOH
66
B
HOH
67
4
HOH
HOH
67
B
HOH
68
4
HOH
HOH
68
B
HOH
70
4
HOH
HOH
70
B
HOH
71
4
HOH
HOH
71
B
HOH
75
4
HOH
HOH
75
B
HOH
76
4
HOH
HOH
76
B
HOH
77
4
HOH
HOH
77
B
HOH
79
4
HOH
HOH
79
B
HOH
80
4
HOH
HOH
80
B
HOH
81
4
HOH
HOH
81
B
HOH
86
4
HOH
HOH
86
B
HOH
87
4
HOH
HOH
87
B
HOH
89
4
HOH
HOH
89
B
HOH
90
4
HOH
HOH
90
B
HOH
92
4
HOH
HOH
92
B
HOH
93
4
HOH
HOH
93
B
HOH
96
4
HOH
HOH
96
B
HOH
97
4
HOH
HOH
97
B
HOH
98
4
HOH
HOH
98
B
HOH
99
4
HOH
HOH
99
B
HOH
100
4
HOH
HOH
100
B
HOH
102
4
HOH
HOH
102
B
HOH
104
4
HOH
HOH
104
B
HOH
106
4
HOH
HOH
106
B
HOH
108
4
HOH
HOH
108
B
HOH
109
4
HOH
HOH
109
B
HOH
110
4
HOH
HOH
110
B
HOH
111
4
HOH
HOH
111
B
HOH
112
4
HOH
HOH
112
B
HOH
114
4
HOH
HOH
114
B
HOH
117
4
HOH
HOH
117
B
HOH
118
4
HOH
HOH
118
B
HOH
119
4
HOH
HOH
119
B
HOH
120
4
HOH
HOH
120
B
HOH
121
4
HOH
HOH
121
B
HOH
123
4
HOH
HOH
123
B
HOH
124
4
HOH
HOH
124
B
HOH
126
4
HOH
HOH
126
B
HOH
127
4
HOH
HOH
127
B
HOH
128
4
HOH
HOH
128
B
HOH
129
4
HOH
HOH
129
B
HOH
130
4
HOH
HOH
130
B
HOH
131
4
HOH
HOH
131
B
HOH
132
4
HOH
HOH
132
B
HOH
133
4
HOH
HOH
133
B
HOH
137
4
HOH
HOH
137
B
HOH
138
4
HOH
HOH
138
B
HOH
139
4
HOH
HOH
139
B
HOH
140
4
HOH
HOH
140
B
HOH
142
4
HOH
HOH
142
B
HOH
143
4
HOH
HOH
143
B
HOH
145
4
HOH
HOH
145
B
MO6
26
4
HOH
HOH
149
B
MO6
26
4
HOH
HOH
151
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
+A
5
n
5
A47
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
+A
17
n
5
A47
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
HOH
147
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
148
E
O
HOH
1_555
178.8
A
HOH
147
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
150
E
O
HOH
1_555
91.1
A
HOH
148
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
150
E
O
HOH
1_555
90.0
A
HOH
147
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
152
E
O
HOH
1_555
89.7
A
HOH
148
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
152
E
O
HOH
1_555
90.0
A
HOH
150
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
A
HOH
152
E
O
HOH
1_555
89.1
A
HOH
147
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
149
F
O
HOH
1_555
88.3
A
HOH
148
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
149
F
O
HOH
1_555
90.6
A
HOH
150
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
149
F
O
HOH
1_555
179.2
A
HOH
152
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
149
F
O
HOH
1_555
91.4
A
HOH
147
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
90.4
A
HOH
148
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
89.9
A
HOH
150
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
89.7
A
HOH
152
E
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
178.8
B
HOH
149
F
O
HOH
1_555
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
89.9
A
A47
5
N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE
A
A47
5
DA
B
A47
17
N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE
B
A47
5
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
11
0.079
SIDE CHAIN
0.27
0.211
0.222
0.218
1.60
5.0
690
7190
6836
10
95.1
RANDOM
1
THROUGHOUT
3.0
PARKINSON ET AL.
1.60
5.0
120
631
25
486
0
0.005
1.1
17.9
1.60
100
1EDR
7518
7518
0
0
0.036
1,2
14.4
3.8
79.7
0.085
1.60
1.69
2.6
61.9
phasing
AMoRE
refinement
X-PLOR
3.840
data reduction
DENZO
data scaling
CCP4
(AGROVATA
data scaling
SCALA
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.607
both
A
DG
4
A
O3'
DG
4
1_555
A
A47
5
A
P
A47
5
1_555
covale
1.606
one
A
A47
5
A
O3'
A47
5
1_555
A
DA
6
A
P
DA
6
1_555
covale
1.607
both
B
DG
16
B
O3'
DG
4
1_555
B
A47
17
B
P
A47
5
1_555
covale
1.604
one
B
A47
17
B
O3'
A47
5
1_555
B
DA
18
B
P
DA
6
1_555
metalc
2.059
A
MG
26
C
MG
MG
1_555
A
HOH
147
E
O
HOH
1_555
metalc
2.063
A
MG
26
C
MG
MG
1_555
A
HOH
148
E
O
HOH
1_555
metalc
2.043
A
MG
26
C
MG
MG
1_555
A
HOH
150
E
O
HOH
1_555
metalc
2.047
A
MG
26
C
MG
MG
1_555
A
HOH
152
E
O
HOH
1_555
metalc
2.076
A
MG
26
C
MG
MG
1_555
B
HOH
149
F
O
HOH
1_555
metalc
2.040
A
MG
26
C
MG
MG
1_555
B
HOH
151
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
A47
5
A
N1
A47
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
A47
5
A
N6
A47
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
A47
17
B
N1
A47
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
A47
17
B
N6
A47
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, MODIFIED NUCLEOTIDE, METHOXYADENOSINE, DAMAGED DNA, DNA
1EDR
PDB
1
1EDR
1
12
1EDR
1
12
1EDR
A
1
1
12
13
24
1EDR
13
24
1EDR
B
1
1
12
BINDING SITE FOR RESIDUE SPM B 25
B
SPM
25
Software
7
BINDING SITE FOR RESIDUE MG A 26
A
MG
26
Software
6
A
DG
10
A
DG
10
7
1_555
A
HOH
48
E
HOH
7
1_555
A
HOH
103
E
HOH
7
1_555
B
DG
14
B
DG
2
7
1_555
B
DC
15
B
DC
3
7
1_555
B
DC
23
B
DC
11
7
2_655
B
DG
24
B
DG
12
7
2_655
A
HOH
147
E
HOH
6
1_555
A
HOH
148
E
HOH
6
1_555
A
HOH
150
E
HOH
6
1_555
A
HOH
152
E
HOH
6
1_555
B
HOH
149
F
HOH
6
1_555
B
HOH
151
F
HOH
6
1_555
19
orthorhombic
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