1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yeagle, P.L.
Salloum, A.
Chopra, A.
Bhawsar, N.
Ali, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
J.Pept.Res.
JPERFA
2150
1397-002X
55
455
465
10.1034/j.1399-3011.2000.00707.x
10888202
Structures of the intradiskal loops and amino terminus of the G-protein receptor, rhodopsin.
2000
10.2210/pdb1edv/pdb
pdb_00001edv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3941.338
RHODOPSIN
SECOND INTRADISKAL LOOP (RESIDUES 172-205)
1
syn
polymer
no
no
LVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVI
LVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
amino terminal of bovine rhodopsin
first intradiskal loop of bovine rhodopsin
Third intradiskal loop of bovine rhodopsin
RCSB
Y
RCSB
2000-01-28
REL
REL
bovine rhodopsin sequence
sample
target function
150
1
2D NOESY
DQF-COSY
1
atm
303
K
distance geometry
1
minimized average structure
2 mM peptide
DMSO
data analysis
Felix
refinement
DIANA
600
Bruker
AMX
LEU
1
n
1
LEU
1
A
VAL
2
n
2
VAL
2
A
GLY
3
n
3
GLY
3
A
TRP
4
n
4
TRP
4
A
SER
5
n
5
SER
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
ILE
8
n
8
ILE
8
A
PRO
9
n
9
PRO
9
A
GLU
10
n
10
GLU
10
A
GLY
11
n
11
GLY
11
A
MET
12
n
12
MET
12
A
GLN
13
n
13
GLN
13
A
CYS
14
n
14
CYS
14
A
SER
15
n
15
SER
15
A
CYS
16
n
16
CYS
16
A
GLY
17
n
17
GLY
17
A
ILE
18
n
18
ILE
18
A
ASP
19
n
19
ASP
19
A
TYR
20
n
20
TYR
20
A
TYR
21
n
21
TYR
21
A
THR
22
n
22
THR
22
A
PRO
23
n
23
PRO
23
A
HIS
24
n
24
HIS
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
THR
27
n
27
THR
27
A
ASN
28
n
28
ASN
28
A
ASN
29
n
29
ASN
29
A
GLU
30
n
30
GLU
30
A
SER
31
n
31
SER
31
A
PHE
32
n
32
PHE
32
A
VAL
33
n
33
VAL
33
A
ILE
34
n
34
ILE
34
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
TYR
20
0.073
SIDE CHAIN
1
A
TYR
21
0.133
SIDE CHAIN
1
A
SER
5
-77.33
48.27
1
A
ARG
6
-164.31
-43.85
1
A
TYR
7
-76.28
-75.56
1
A
MET
12
72.08
-51.31
1
A
CYS
14
-82.23
44.91
1
A
SER
15
-179.41
-150.01
1
A
CYS
16
-160.45
-39.53
1
A
ILE
18
58.44
90.97
1
A
TYR
20
-67.99
-92.32
1
A
HIS
24
-177.30
95.00
1
A
GLU
26
-75.43
41.76
1
A
THR
27
173.07
45.60
1
A
ASN
28
-169.67
-58.64
1
A
ASN
29
-85.07
-88.37
1
A
PHE
32
-167.13
55.16
1
A
VAL
33
58.64
174.79
minimized average
SOLUTION STRUCTURE OF 2ND INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 172-205)
1
N
N
A
TYR
20
A
TYR
20
HELX_P
A
GLU
25
A
GLU
25
1
1
6
Ion Transport
helix-turn-helix, Ion Transport
A
PHE
32
A
PHE
32
1
A
VAL
33
A
VAL
33
-24.06
OPSD_BOVIN
UNP
1
172
P02699
LVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVI
172
205
1EDV
1
34
P02699
A
1
1
34
1
P 1