1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yeagle, P.L.
Salloum, A.
Chopra, A.
Bhawsar, N.
Ali, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
J.Pept.Res.
JPERFA
2150
1397-002X
55
455
465
10.1034/j.1399-3011.2000.00707.x
10888202
Structures of the intradiskal loops and amino terminus of the G-protein receptor, rhodopsin.
2000
10.2210/pdb1edx/pdb
pdb_00001edx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4604.132
RHODOPSIN
AMINO TERMINAL (RESIDUES 1-40)
1
syn
polymer
no
no
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWEFSML
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWEFSML
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
First intradiskal loop of bovine rhodopsin
Second intradiskal loop of bovine rhodopsin
Third intradiskal loop of bovine rhodopsin
RCSB
Y
RCSB
2000-01-28
REL
REL
bovine rhodopsin
sample
target function
150
1
2D NOESY
DQF-COSY
1
atm
303
K
distance geometry
1
minimized average structure
2 mM peptide
DMSO
data analysis
Felix
structure solution
DIANA
refinement
DIANA
600
Bruker
AMX
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
GLY
3
n
3
GLY
3
A
THR
4
n
4
THR
4
A
GLU
5
n
5
GLU
5
A
GLY
6
n
6
GLY
6
A
PRO
7
n
7
PRO
7
A
ASN
8
n
8
ASN
8
A
PHE
9
n
9
PHE
9
A
TYR
10
n
10
TYR
10
A
VAL
11
n
11
VAL
11
A
PRO
12
n
12
PRO
12
A
PHE
13
n
13
PHE
13
A
SER
14
n
14
SER
14
A
ASN
15
n
15
ASN
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
GLY
18
n
18
GLY
18
A
VAL
19
n
19
VAL
19
A
VAL
20
n
20
VAL
20
A
ARG
21
n
21
ARG
21
A
SER
22
n
22
SER
22
A
PRO
23
n
23
PRO
23
A
PHE
24
n
24
PHE
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
PRO
27
n
27
PRO
27
A
GLN
28
n
28
GLN
28
A
TYR
29
n
29
TYR
29
A
TYR
30
n
30
TYR
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
GLU
33
n
33
GLU
33
A
PRO
34
n
34
PRO
34
A
TRP
35
n
35
TRP
35
A
GLU
36
n
36
GLU
36
A
PHE
37
n
37
PHE
37
A
SER
38
n
38
SER
38
A
MET
39
n
39
MET
39
A
LEU
40
n
40
LEU
40
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
TYR
30
0.096
SIDE CHAIN
1
A
ASN
2
65.59
-67.64
1
A
THR
4
-175.49
-55.68
1
A
GLU
5
62.61
-27.90
1
A
PHE
9
34.33
69.88
1
A
VAL
11
69.65
112.46
1
A
PRO
12
-69.54
8.30
1
A
ASN
15
-91.77
-90.28
1
A
TYR
30
-157.62
83.71
1
A
ALA
32
-123.03
-95.89
1
A
GLU
33
-141.54
24.16
1
A
PHE
37
73.87
-28.74
1
A
MET
39
70.28
-58.63
minimized average
SOLUTION STRUCTURE OF AMINO TERMINUS OF BOVINE RHODOPSIN (RESIDUES 1-40)
1
N
N
A
LYS
16
A
LYS
16
HELX_P
A
ARG
21
A
ARG
21
1
1
6
A
GLU
25
A
GLU
25
HELX_P
A
TYR
30
A
TYR
30
1
2
6
Ion Transport
helix, Ion Transport
A
PRO
23
A
PRO
23
1
A
PHE
24
A
PHE
24
1.10
OPSD_BOVIN
UNP
1
1
P02699
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWEFSML
1
40
1EDX
1
40
P02699
A
1
1
40
1
P 1