0.02331
0.00000
0.00000
0.00000
0.01653
0.00000
0.00000
0.00000
0.01205
0.00000
0.00000
0.00000
Akita, M.
Suzuki, A.
Kobayashi, T.
Ito, S.
Yamane, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.900
60.500
83.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1786
1792
10.1107/S0907444900003334
11717490
The first structure of pectate lyase belonging to polysaccharide lyase family 3.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1999-01-01
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
20947.287
PECTATE LYASE
4.2.2.2
1
nat
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
170
nat
water
no
no
APTVVHETIRVPAGQTFDGKGQTYVANPNTLGDGSQAENQKPIFRLEAGASLKNVVIGAPAADGVHCYGDCTITNVIWED
VGEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNISRVKDAILRT
DSSTSTGRIVNTRYSNVPTLFKGFKSGNTTASGNTQY
APTVVHETIRVPAGQTFDGKGQTYVANPNTLGDGSQAENQKPIFRLEAGASLKNVVIGAPAADGVHCYGDCTITNVIWED
VGEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNISRVKDAILRT
DSSTSTGRIVNTRYSNVPTLFKGFKSGNTTASGNTQY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
sample
98226
Bacillus sp.
KSM-P15
1
2.57
52.14
VAPOR DIFFUSION, HANGING DROP
6.7
PEG 8000, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
277.0
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
1
0
2001-01-31
1
1
2008-04-27
1
2
2011-07-13
RCSB
Y
RCSB
2000-01-31
REL
CA
CALCIUM ION
HOH
water
IUM
300
2
CA
CA
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
THR
3
n
3
THR
3
A
VAL
4
n
4
VAL
4
A
VAL
5
n
5
VAL
5
A
HIS
6
n
6
HIS
6
A
GLU
7
n
7
GLU
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
ARG
10
n
10
ARG
10
A
VAL
11
n
11
VAL
11
A
PRO
12
n
12
PRO
12
A
ALA
13
n
13
ALA
13
A
GLY
14
n
14
GLY
14
A
GLN
15
n
15
GLN
15
A
THR
16
n
16
THR
16
A
PHE
17
n
17
PHE
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
LYS
20
n
20
LYS
20
A
GLY
21
n
21
GLY
21
A
GLN
22
n
22
GLN
22
A
THR
23
n
23
THR
23
A
TYR
24
n
24
TYR
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
PRO
28
n
28
PRO
28
A
ASN
29
n
29
ASN
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
GLN
36
n
36
GLN
36
A
ALA
37
n
37
ALA
37
A
GLU
38
n
38
GLU
38
A
ASN
39
n
39
ASN
39
A
GLN
40
n
40
GLN
40
A
LYS
41
n
41
LYS
41
A
PRO
42
n
42
PRO
42
A
ILE
43
n
43
ILE
43
A
PHE
44
n
44
PHE
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
GLY
49
n
49
GLY
49
A
ALA
50
n
50
ALA
50
A
SER
51
n
51
SER
51
A
LEU
52
n
52
LEU
52
A
LYS
53
n
53
LYS
53
A
ASN
54
n
54
ASN
54
A
VAL
55
n
55
VAL
55
A
VAL
56
n
56
VAL
56
A
ILE
57
n
57
ILE
57
A
GLY
58
n
58
GLY
58
A
ALA
59
n
59
ALA
59
A
PRO
60
n
60
PRO
60
A
ALA
61
n
61
ALA
61
A
ALA
62
n
62
ALA
62
A
ASP
63
n
63
ASP
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
HIS
66
n
66
HIS
66
A
CYS
67
n
67
CYS
67
A
TYR
68
n
68
TYR
68
A
GLY
69
n
69
GLY
69
A
ASP
70
n
70
ASP
70
A
CYS
71
n
71
CYS
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
THR
74
n
74
THR
74
A
ASN
75
n
75
ASN
75
A
VAL
76
n
76
VAL
76
A
ILE
77
n
77
ILE
77
A
TRP
78
n
78
TRP
78
A
GLU
79
n
79
GLU
79
A
ASP
80
n
80
ASP
80
A
VAL
81
n
81
VAL
81
A
GLY
82
n
82
GLY
82
A
GLU
83
n
83
GLU
83
A
ASP
84
n
84
ASP
84
A
ALA
85
n
85
ALA
85
A
LEU
86
n
86
LEU
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
LYS
89
n
89
LYS
89
A
SER
90
n
90
SER
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
THR
93
n
93
THR
93
A
VAL
94
n
94
VAL
94
A
ASN
95
n
95
ASN
95
A
ILE
96
n
96
ILE
96
A
SER
97
n
97
SER
97
A
GLY
98
n
98
GLY
98
A
GLY
99
n
99
GLY
99
A
ALA
100
n
100
ALA
100
A
ALA
101
n
101
ALA
101
A
TYR
102
n
102
TYR
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
TYR
105
n
105
TYR
105
A
ASP
106
n
106
ASP
106
A
LYS
107
n
107
LYS
107
A
VAL
108
n
108
VAL
108
A
PHE
109
n
109
PHE
109
A
GLN
110
n
110
GLN
110
A
ILE
111
n
111
ILE
111
A
ASN
112
n
112
ASN
112
A
ALA
113
n
113
ALA
113
A
ALA
114
n
114
ALA
114
A
GLY
115
n
115
GLY
115
A
THR
116
n
116
THR
116
A
ILE
117
n
117
ILE
117
A
ASN
118
n
118
ASN
118
A
ILE
119
n
119
ILE
119
A
ARG
120
n
120
ARG
120
A
ASN
121
n
121
ASN
121
A
PHE
122
n
122
PHE
122
A
ARG
123
n
123
ARG
123
A
ALA
124
n
124
ALA
124
A
ASP
125
n
125
ASP
125
A
ASP
126
n
126
ASP
126
A
ILE
127
n
127
ILE
127
A
GLY
128
n
128
GLY
128
A
LYS
129
n
129
LYS
129
A
LEU
130
n
130
LEU
130
A
VAL
131
n
131
VAL
131
A
ARG
132
n
132
ARG
132
A
GLN
133
n
133
GLN
133
A
ASN
134
n
134
ASN
134
A
GLY
135
n
135
GLY
135
A
GLY
136
n
136
GLY
136
A
THR
137
n
137
THR
137
A
THR
138
n
138
THR
138
A
TYR
139
n
139
TYR
139
A
LYS
140
n
140
LYS
140
A
VAL
141
n
141
VAL
141
A
VAL
142
n
142
VAL
142
A
MET
143
n
143
MET
143
A
ASN
144
n
144
ASN
144
A
VAL
145
n
145
VAL
145
A
GLU
146
n
146
GLU
146
A
ASN
147
n
147
ASN
147
A
CYS
148
n
148
CYS
148
A
ASN
149
n
149
ASN
149
A
ILE
150
n
150
ILE
150
A
SER
151
n
151
SER
151
A
ARG
152
n
152
ARG
152
A
VAL
153
n
153
VAL
153
A
LYS
154
n
154
LYS
154
A
ASP
155
n
155
ASP
155
A
ALA
156
n
156
ALA
156
A
ILE
157
n
157
ILE
157
A
LEU
158
n
158
LEU
158
A
ARG
159
n
159
ARG
159
A
THR
160
n
160
THR
160
A
ASP
161
n
161
ASP
161
A
SER
162
n
162
SER
162
A
SER
163
n
163
SER
163
A
THR
164
n
164
THR
164
A
SER
165
n
165
SER
165
A
THR
166
n
166
THR
166
A
GLY
167
n
167
GLY
167
A
ARG
168
n
168
ARG
168
A
ILE
169
n
169
ILE
169
A
VAL
170
n
170
VAL
170
A
ASN
171
n
171
ASN
171
A
THR
172
n
172
THR
172
A
ARG
173
n
173
ARG
173
A
TYR
174
n
174
TYR
174
A
SER
175
n
175
SER
175
A
ASN
176
n
176
ASN
176
A
VAL
177
n
177
VAL
177
A
PRO
178
n
178
PRO
178
A
THR
179
n
179
THR
179
A
LEU
180
n
180
LEU
180
A
PHE
181
n
181
PHE
181
A
LYS
182
n
182
LYS
182
A
GLY
183
n
183
GLY
183
A
PHE
184
n
184
PHE
184
A
LYS
185
n
185
LYS
185
A
SER
186
n
186
SER
186
A
GLY
187
n
187
GLY
187
A
ASN
188
n
188
ASN
188
A
THR
189
n
189
THR
189
A
THR
190
n
190
THR
190
A
ALA
191
n
191
ALA
191
A
SER
192
n
192
SER
192
A
GLY
193
n
193
GLY
193
A
ASN
194
n
194
ASN
194
A
THR
195
n
195
THR
195
A
GLN
196
n
196
GLN
196
A
TYR
197
n
197
TYR
197
A
author_defined_assembly
1
monomeric
A
VAL
81
A
O
VAL
81
1_555
A
CA
300
B
CA
CA
1_555
A
ASP
80
A
OD2
ASP
80
1_555
89.0
A
VAL
81
A
O
VAL
81
1_555
A
CA
300
B
CA
CA
1_555
A
LYS
103
A
O
LYS
103
1_555
92.7
A
ASP
80
A
OD2
ASP
80
1_555
A
CA
300
B
CA
CA
1_555
A
LYS
103
A
O
LYS
103
1_555
90.3
A
VAL
81
A
O
VAL
81
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
359
C
O
HOH
1_555
155.1
A
ASP
80
A
OD2
ASP
80
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
359
C
O
HOH
1_555
67.9
A
LYS
103
A
O
LYS
103
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
359
C
O
HOH
1_555
96.4
A
VAL
81
A
O
VAL
81
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
327
C
O
HOH
1_555
69.5
A
ASP
80
A
OD2
ASP
80
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
327
C
O
HOH
1_555
158.4
A
LYS
103
A
O
LYS
103
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
327
C
O
HOH
1_555
88.9
A
HOH
359
C
O
HOH
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
327
C
O
HOH
1_555
133.7
A
VAL
81
A
O
VAL
81
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
94.4
A
ASP
80
A
OD2
ASP
80
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
104.0
A
LYS
103
A
O
LYS
103
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
164.2
A
HOH
359
C
O
HOH
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
82.9
A
HOH
327
C
O
HOH
1_555
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
80.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
3
A
N
THR
3
A
O
THR
23
A
O
THR
23
A
N
PHE
17
A
N
PHE
17
A
O
SER
51
A
O
SER
51
A
N
LEU
52
A
N
LEU
52
A
O
THR
72
A
O
THR
72
A
N
CYS
71
A
N
CYS
71
A
O
THR
93
A
O
THR
93
A
N
VAL
94
A
N
VAL
94
A
O
THR
116
A
O
THR
116
A
O
GLY
115
A
O
GLY
115
A
N
VAL
142
A
N
VAL
142
A
N
MET
143
A
N
MET
143
A
O
THR
166
A
O
THR
166
A
O
GLY
167
A
O
GLY
167
A
N
THR
190
A
N
THR
190
A
O
ILE
9
A
O
ILE
9
A
N
ARG
45
A
N
ARG
45
A
N
LEU
46
A
N
LEU
46
A
O
HIS
66
A
O
HIS
66
A
O
VAL
65
A
O
VAL
65
A
N
THR
87
A
N
THR
87
A
N
LEU
86
A
N
LEU
86
A
O
VAL
108
A
O
VAL
108
A
N
ALA
100
A
N
ALA
100
A
O
VAL
76
A
O
VAL
76
A
N
TRP
78
A
N
TRP
78
A
O
ALA
100
A
O
ALA
100
A
N
ALA
101
A
N
ALA
101
A
O
ARG
123
A
O
ARG
123
A
N
ALA
124
A
N
ALA
124
A
O
ASN
149
A
O
ASN
149
A
O
LEU
158
A
O
LEU
158
A
N
LYS
182
A
N
LYS
182
A
N
LYS
182
A
N
LYS
182
A
O
LEU
158
A
O
LEU
158
A
N
ILE
150
A
N
ILE
150
A
O
ARG
173
A
O
ARG
173
A
N
TYR
174
A
N
TYR
174
A
O
THR
195
A
O
THR
195
1
A
CB
GLU
7
A
CB
GLU
7
0
Y
1
A
CG
GLU
7
A
CG
GLU
7
0
Y
1
A
CD
GLU
7
A
CD
GLU
7
0
Y
1
A
OE1
GLU
7
A
OE1
GLU
7
0
Y
1
A
OE2
GLU
7
A
OE2
GLU
7
0
Y
1
A
CB
LYS
20
A
CB
LYS
20
0
Y
1
A
CG
LYS
20
A
CG
LYS
20
0
Y
1
A
CD
LYS
20
A
CD
LYS
20
0
Y
1
A
CE
LYS
20
A
CE
LYS
20
0
Y
1
A
NZ
LYS
20
A
NZ
LYS
20
0
Y
1
A
CB
ASN
39
A
CB
ASN
39
0
Y
1
A
CG
ASN
39
A
CG
ASN
39
0
Y
1
A
OD1
ASN
39
A
OD1
ASN
39
0
Y
1
A
ND2
ASN
39
A
ND2
ASN
39
0
Y
1
A
CB
LYS
185
A
CB
LYS
185
0
Y
1
A
CG
LYS
185
A
CG
LYS
185
0
Y
1
A
CD
LYS
185
A
CD
LYS
185
0
Y
1
A
CE
LYS
185
A
CE
LYS
185
0
Y
1
A
NZ
LYS
185
A
NZ
LYS
185
0
Y
1
6.47
0.80
106.30
112.77
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
78
78
78
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
78
78
78
N
1
-3.09
0.50
120.30
117.21
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
4.08
0.50
120.30
124.38
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
123
123
123
N
1
-6.82
0.50
120.30
113.48
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
-4.07
0.60
121.00
116.93
A
A
A
CB
CG
CD1
TYR
TYR
TYR
174
174
174
N
1
A
A
NE2
CD2
HIS
HIS
6
6
-0.071
0.011
1.373
1.302
N
1
A
A
NE2
CD2
HIS
HIS
66
66
-0.077
0.011
1.373
1.296
N
1
A
ASN
39
43.69
71.26
1
A
ALA
62
43.19
-118.73
1
A
ASP
80
-167.75
102.78
1
A
ASP
106
-132.02
-97.17
1
A
ASP
126
60.94
77.07
1
A
ASN
134
-39.98
125.32
1
A
ARG
152
52.56
71.92
1
A
ASP
155
-125.14
-62.60
Four disordered side-chain(1A,7E,20K,39K) were excluded in refinement stage.
0.234
0.186
2.3
10.0
466
9693
8859
RANDOM
1
3.0
0.0
2.3
10.0
170
1643
1
0
1472
0.014
2.7
2.3
20.0
1EE6
10063
0.0
0.0
0.069
1
12.0
3.8
99.3
0.204
2.30
2.38
1
98.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
refinement
X-PLOR
3.1
CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.
CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.
1
N
N
2
N
N
3
N
N
disulf
1.970
A
CYS
67
A
SG
CYS
67
1_555
A
CYS
71
A
SG
CYS
71
1_555
metalc
2.169
A
CA
300
B
CA
CA
1_555
A
VAL
81
A
O
VAL
81
1_555
metalc
2.216
A
CA
300
B
CA
CA
1_555
A
ASP
80
A
OD2
ASP
80
1_555
metalc
2.281
A
CA
300
B
CA
CA
1_555
A
LYS
103
A
O
LYS
103
1_555
metalc
2.959
A
CA
300
B
CA
CA
1_555
A
HOH
359
C
O
HOH
1_555
metalc
2.503
A
CA
300
B
CA
CA
1_555
A
HOH
327
C
O
HOH
1_555
metalc
2.189
A
CA
300
B
CA
CA
1_555
A
HOH
467
C
O
HOH
1_555
LYASE
Parallel beta-helix, High-alkaline, Low-Molecular-Weight, LYASE
A
ALA
59
A
ALA
59
1
A
PRO
60
A
PRO
60
-3.73
Q9RHW0_BACSP
UNP
1
28
Q9RHW0
APTVVHETIRVPAGQTFDGKGQTYVANPNTLGDGSQAENQKPIFRLEAGASLKNVVIGAPAADGVHCYGDCTITNVIWED
VGEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNISRVKDAILRT
DSSTSTGRIVNTRYSNVPTLFKGFKSGNTTASGNTQY
28
224
1EE6
1
197
Q9RHW0
A
1
1
197
9
13
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
THR
3
A
THR
3
A
VAL
5
A
VAL
5
A
THR
16
A
THR
16
A
ALA
26
A
ALA
26
A
ALA
50
A
ALA
50
A
ILE
57
A
ILE
57
A
CYS
71
A
CYS
71
A
TRP
78
A
TRP
78
A
GLY
92
A
GLY
92
A
SER
97
A
SER
97
A
GLY
115
A
GLY
115
A
ARG
120
A
ARG
120
A
VAL
141
A
VAL
141
A
GLU
146
A
GLU
146
A
THR
166
A
THR
166
A
VAL
170
A
VAL
170
A
THR
189
A
THR
189
A
SER
192
A
SER
192
A
ILE
9
A
ILE
9
A
VAL
11
A
VAL
11
A
PHE
44
A
PHE
44
A
LEU
46
A
LEU
46
A
VAL
65
A
VAL
65
A
TYR
68
A
TYR
68
A
LEU
86
A
LEU
86
A
SER
90
A
SER
90
A
ALA
100
A
ALA
100
A
ILE
111
A
ILE
111
A
CYS
71
A
CYS
71
A
TRP
78
A
TRP
78
A
ALA
100
A
ALA
100
A
ILE
111
A
ILE
111
A
ARG
123
A
ARG
123
A
GLN
133
A
GLN
133
A
ASN
149
A
ASN
149
A
ARG
159
A
ARG
159
A
PHE
181
A
PHE
181
A
LYS
182
A
LYS
182
A
ASN
149
A
ASN
149
A
ARG
159
A
ARG
159
A
ARG
173
A
ARG
173
A
SER
175
A
SER
175
A
THR
195
A
THR
195
A
GLN
196
A
GLN
196
BINDING SITE FOR RESIDUE CA A 300
Software
6
A
ASP
80
A
ASP
80
6
1_555
A
VAL
81
A
VAL
81
6
1_555
A
LYS
103
A
LYS
103
6
1_555
A
HOH
327
C
HOH
6
1_555
A
HOH
359
C
HOH
6
1_555
A
HOH
467
C
HOH
6
1_555
19
P 21 21 21