0.038911
0.000000
0.000000
0.000000
0.024552
0.000000
0.000000
0.000000
0.015065
0.00000
0.00000
0.00000
Neidle, S.
Simpson, I.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
90.0
90.0
25.7
40.73
66.38
C28 H28 N4 O
436.548
2,5-BIS-[4-[CYCLOPENTA-1,3-DIEN-5-YLAMINO-1-AMINOMETHYL]-PHEN-1-YL]FURAN
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
R
C
N
2
N
N
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
O
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
N
26
S
C
N
27
N
N
N
28
N
N
N
29
N
C
N
30
N
C
N
31
N
C
N
32
N
C
N
33
N
C
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
O
N
63
N
P
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
C
N
68
R
C
N
69
N
O
N
70
S
C
N
71
N
O
N
72
N
C
N
73
R
C
Y
74
N
N
Y
75
N
C
Y
76
N
N
Y
77
N
C
Y
78
N
C
N
79
N
N
Y
80
N
N
Y
81
N
C
Y
82
N
N
Y
83
N
C
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
O
N
99
N
P
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
C
N
104
R
C
N
105
N
O
N
106
S
C
N
107
N
O
N
108
N
C
N
109
R
C
N
110
N
N
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
C
N
115
N
N
N
116
N
C
N
117
N
C
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
C
N
138
R
C
N
139
N
O
N
140
S
C
N
141
N
O
N
142
N
C
N
143
R
C
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
C
N
152
N
N
N
153
N
N
Y
154
N
C
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
O
N
170
N
P
N
171
N
O
N
172
N
O
N
173
N
O
N
174
N
C
N
175
R
C
N
176
N
O
N
177
S
C
N
178
N
O
N
179
N
C
N
180
R
C
N
181
N
N
N
182
N
C
N
183
N
O
N
184
N
N
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
sing
Y
21
N
sing
Y
22
N
sing
N
23
N
sing
Y
24
N
doub
N
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
doub
Y
32
N
sing
Y
33
N
sing
N
34
N
sing
Y
35
N
doub
N
36
N
sing
Y
37
N
sing
Y
38
N
doub
Y
39
N
sing
Y
40
N
sing
N
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
Y
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
Y
89
N
sing
Y
90
N
sing
Y
91
N
doub
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
doub
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
sing
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
doub
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
300
321
337
10.1006/jmbi.2000.3869
10873468
A thermodynamic and structural analysis of DNA minor-groove complex formation.
2000
10.2210/pdb1eel/pdb
pdb_00001eel
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
YALE FOCUSSING MIRRORS
IMAGE PLATE
1998-10-20
RIGAKU RAXIS IIC
Y
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
3663.392
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
2
syn
polymer
436.548
2,5-BIS-[4-[CYCLOPENTA-1,3-DIEN-5-YLAMINO-1-AMINOMETHYL]-PHEN-1-YL]FURAN
1
syn
non-polymer
18.015
water
90
nat
water
no
no
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.37
48.12
VAPOR DIFFUSION, HANGING DROP
7
MPD 3 UL OF 25%, MGCL2 2UL OF 90MM, SPERMINE 1UL OF 10MM, DNA 2UL OF 2MM, LIGAND 2UL OF 3MM, MPD IN RESERVOIR 1ML OF 30%, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
MGCL2
1
SPERMINE
1
MPD
1
MPD
2
3.076
1
19
A
1
B
24
-3.764
A_DC1:DG24_B
1
-11.064
0.126
-0.419
-0.351
-3.369
1
19
A
2
B
23
-2.221
A_DG2:DC23_B
2
-8.852
0.014
0.096
-0.337
-5.770
1
19
A
3
B
22
-0.504
A_DC3:DG22_B
3
-8.760
0.086
0.143
-0.400
6.965
1
19
A
4
B
21
-3.492
A_DG4:DC21_B
4
-11.108
0.197
-0.137
-0.587
5.695
1
20
A
5
B
20
6.564
A_DA5:DT20_B
5
-12.336
-0.208
0.161
0.195
-4.081
1
20
A
6
B
19
11.215
A_DA6:DT19_B
6
-22.089
-0.355
-0.274
0.073
-2.303
1
20
A
7
B
18
3.563
A_DT7:DA18_B
7
-16.761
-0.412
0.504
-0.015
-9.100
1
20
A
8
B
17
-1.415
A_DT8:DA17_B
8
-12.938
0.060
0.126
-0.316
-11.721
1
19
A
9
B
16
-1.627
A_DC9:DG16_B
9
-5.364
0.049
0.111
-0.240
-1.346
1
19
A
10
B
15
11.603
A_DG10:DC15_B
10
-10.621
0.062
-0.021
0.133
-2.359
1
19
A
11
B
14
-5.163
A_DC11:DG14_B
11
-19.413
0.302
0.351
-0.120
3.263
1
19
A
12
B
13
-8.302
A_DG12:DC13_B
12
-9.224
-0.314
0.721
-0.292
3.502
36.419
A
A
1
2
17.637
B
B
24
23
3.570
10.854
-0.093
0.304
AA_DC1DG2:DC23DG24_BB
1
-2.969
4.824
34.693
-1.187
-0.309
3.490
37.830
A
A
2
3
-4.768
B
B
23
22
3.497
-3.087
0.614
0.313
AA_DG2DC3:DG22DC23_BB
2
2.120
-3.275
37.651
0.907
-0.655
3.181
34.589
A
A
3
4
14.192
B
B
22
21
3.093
8.359
-0.472
0.771
AA_DC3DG4:DC21DG22_BB
3
0.425
-0.721
33.591
0.041
0.858
3.297
32.713
A
A
4
5
6.665
B
B
21
20
3.355
3.743
0.406
-0.046
AA_DG4DA5:DT20DC21_BB
4
-2.125
3.784
32.436
-0.741
-1.095
3.543
35.439
A
A
5
6
3.658
B
B
20
19
3.547
2.224
0.156
-0.001
AA_DA5DA6:DT19DT20_BB
5
2.365
-3.891
35.294
-0.356
0.122
3.227
34.521
A
A
6
7
-1.319
B
B
19
18
3.252
-0.780
0.011
-0.486
AA_DA6DT7:DA18DT19_BB
6
-5.094
8.615
34.145
-0.699
-0.805
3.373
38.042
A
A
7
8
3.660
B
B
18
17
3.425
2.384
-0.457
-0.408
AA_DT7DT8:DA17DA18_BB
7
1.636
-2.513
37.936
-0.941
0.917
3.286
36.366
A
A
8
9
0.780
B
B
17
16
3.290
0.486
-0.052
-0.180
AA_DT8DC9:DG16DA17_BB
8
-1.739
2.788
36.323
-0.357
-0.160
3.357
33.205
A
A
9
10
6.641
B
B
16
15
3.229
3.785
0.381
1.195
AA_DC9DG10:DC15DG16_BB
9
1.830
-3.210
32.945
1.450
-0.356
3.498
43.183
A
A
10
11
-13.712
B
B
15
14
3.565
-9.955
-1.577
0.906
AA_DG10DC11:DG14DC15_BB
10
-7.918
10.905
41.353
2.311
1.284
3.216
33.300
A
A
11
12
1.244
B
B
14
13
3.243
0.711
0.142
0.207
AA_DC11DG12:DC13DG14_BB
11
-3.443
6.020
33.119
0.245
-0.816
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-02-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
RCSB
2000-02-01
REL
D24
2,5-BIS-[4-[CYCLOPENTA-1,3-DIEN-5-YLAMINO-1-AMINOMETHYL]-PHEN-1-YL]FURAN
HOH
water
298D
DNA PART OF NDB STRUCTURE GDL044
PDB
experimental model
D24
25
2
D24
D24
25
B
H2O
26
3
HOH
HOH
26
A
H2O
29
3
HOH
HOH
29
A
H2O
31
3
HOH
HOH
31
A
H2O
32
3
HOH
HOH
32
A
H2O
33
3
HOH
HOH
33
A
H2O
36
3
HOH
HOH
36
A
H2O
37
3
HOH
HOH
37
A
H2O
38
3
HOH
HOH
38
A
H2O
40
3
HOH
HOH
40
A
H2O
44
3
HOH
HOH
44
A
H2O
45
3
HOH
HOH
45
A
H2O
48
3
HOH
HOH
48
A
H2O
49
3
HOH
HOH
49
A
H2O
50
3
HOH
HOH
50
A
H2O
52
3
HOH
HOH
52
A
H2O
54
3
HOH
HOH
54
A
H2O
56
3
HOH
HOH
56
A
H2O
59
3
HOH
HOH
59
A
H2O
61
3
HOH
HOH
61
A
H2O
62
3
HOH
HOH
62
A
H2O
63
3
HOH
HOH
63
A
H2O
66
3
HOH
HOH
66
A
H2O
67
3
HOH
HOH
67
A
H2O
71
3
HOH
HOH
71
A
H2O
72
3
HOH
HOH
72
A
H2O
74
3
HOH
HOH
74
A
H2O
75
3
HOH
HOH
75
A
H2O
76
3
HOH
HOH
76
A
H2O
79
3
HOH
HOH
79
A
H2O
82
3
HOH
HOH
82
A
H2O
85
3
HOH
HOH
85
A
H2O
88
3
HOH
HOH
88
A
H2O
89
3
HOH
HOH
89
A
H2O
90
3
HOH
HOH
90
A
H2O
91
3
HOH
HOH
91
A
H2O
92
3
HOH
HOH
92
A
H2O
97
3
HOH
HOH
97
A
H2O
98
3
HOH
HOH
98
A
H2O
99
3
HOH
HOH
99
A
H2O
101
3
HOH
HOH
101
A
H2O
102
3
HOH
HOH
102
A
H2O
105
3
HOH
HOH
105
A
H2O
107
3
HOH
HOH
107
A
H2O
108
3
HOH
HOH
108
A
H2O
109
3
HOH
HOH
109
A
H2O
112
3
HOH
HOH
112
A
H2O
115
3
HOH
HOH
115
A
H2O
27
3
HOH
HOH
27
B
H2O
28
3
HOH
HOH
28
B
H2O
30
3
HOH
HOH
30
B
H2O
34
3
HOH
HOH
34
B
H2O
35
3
HOH
HOH
35
B
H2O
39
3
HOH
HOH
39
B
H2O
41
3
HOH
HOH
41
B
H2O
42
3
HOH
HOH
42
B
H2O
43
3
HOH
HOH
43
B
H2O
46
3
HOH
HOH
46
B
H2O
47
3
HOH
HOH
47
B
H2O
51
3
HOH
HOH
51
B
H2O
53
3
HOH
HOH
53
B
H2O
55
3
HOH
HOH
55
B
H2O
57
3
HOH
HOH
57
B
H2O
58
3
HOH
HOH
58
B
H2O
60
3
HOH
HOH
60
B
H2O
64
3
HOH
HOH
64
B
H2O
65
3
HOH
HOH
65
B
H2O
68
3
HOH
HOH
68
B
H2O
69
3
HOH
HOH
69
B
H2O
70
3
HOH
HOH
70
B
H2O
73
3
HOH
HOH
73
B
H2O
77
3
HOH
HOH
77
B
H2O
78
3
HOH
HOH
78
B
H2O
80
3
HOH
HOH
80
B
H2O
81
3
HOH
HOH
81
B
H2O
83
3
HOH
HOH
83
B
H2O
84
3
HOH
HOH
84
B
H2O
86
3
HOH
HOH
86
B
H2O
87
3
HOH
HOH
87
B
H2O
93
3
HOH
HOH
93
B
H2O
94
3
HOH
HOH
94
B
H2O
95
3
HOH
HOH
95
B
H2O
96
3
HOH
HOH
96
B
H2O
100
3
HOH
HOH
100
B
H2O
103
3
HOH
HOH
103
B
H2O
104
3
HOH
HOH
104
B
H2O
106
3
HOH
HOH
106
B
H2O
111
3
HOH
HOH
111
B
H2O
113
3
HOH
HOH
113
B
H2O
114
3
HOH
HOH
114
B
H2O
116
3
HOH
HOH
116
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C7
D24
25
PLANAR
1
B
C7'
D24
25
PLANAR
USED SHELX-97 PROCEDURE
0.227
0.184
2.40
8.0
3105
RANDOM
1
THROUGHOUT
2.0
1.0
MOLECULAR REPLACEMENT
DNA PART OF NDB STRUCTURE GDL044
PARKINSON ET AL.
2.40
8.0
91
610
33
486
0
0.020
0.012
2.40
12
1EEL
3105
2.0
1.0
0.033
1
9.6
6
94.3
data reduction
DENZO
data scaling
SCALEPACK
refinement
SHELXL-97
STRUCTURE OF A COMPLEX BETWEEN THE DNA SEQUENCE DCGCGAATTCGCG AND BIS[PIPERIDINO-ETHYL]-FURAMIDINE
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
MINOR GROOVE BINDING LIGAND, B-DNA, BULKY SIDE-CHAINS, DNA
1EEL
PDB
1
1EEL
1
12
1EEL
1
12
1EEL
A
1
1
12
13
24
1EEL
13
24
1EEL
B
1
1
12
BINDING SITE FOR RESIDUE D24 B 25
B
D24
25
Software
13
A
DA
6
A
DA
6
13
1_555
A
DT
7
A
DT
7
13
1_555
A
DT
8
A
DT
8
13
1_555
A
DC
9
A
DC
9
13
1_555
B
DA
17
B
DA
5
13
1_555
B
DA
18
B
DA
6
13
1_555
B
DT
19
B
DT
7
13
1_555
B
DT
20
B
DT
8
13
1_555
B
DC
21
B
DC
9
13
1_555
B
HOH
30
E
HOH
13
1_555
B
HOH
41
E
HOH
13
1_555
B
HOH
57
E
HOH
13
1_555
B
HOH
111
E
HOH
13
1_555
19
orthorhombic
P 21 21 21