1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mackereth, C.D. Arrowsmith, C.H. Edwards, A.M. Mcintosh, L.P. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 6316 6321 10.1073/pnas.97.12.6316 10841539 Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. 2000 10.2210/pdb1ef4/pdb pdb_00001ef4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6444.494 DNA-DIRECTED RNA POLYMERASE 2.7.7.6 SUBUNIT RPB10 1 man polymer 65.409 ZINC ION 1 syn non-polymer SUBUNIT N no no MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVETW MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVETW A TT11 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermobacter Escherichia sample 145262 Methanothermobacter thermautotrophicus 562 Escherichia coli PLASMID PET15B Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-06-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2000-02-07 REL REL ZN ZINC ION THIS STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE NMR SPECTROSCOPY. structures with acceptable covalent geometry 60 20 3D METHYL-METHYL 13C_ SEPARATED NOESY 2D NOESY 3D_13C-SEPARATED_ NOESY 3D_15N-SEPARATED_ NOESY HNHA 2D CT-HMQC-J 150mM_NACL 7.50 AMBIENT 303.00 K REFINED USING ARIA AMBIGUOUS AND UNAMBIGUOUS RESTRAINTS, AND INCLUDING RESTRAINTS FOR DIHEDRAL ANGLES AND HYDROGEN BOND DISTANCES. ZINC COORDINATION TO CYS 6,9,43,44 WITH IDEALIZED TETRAHEDRAL RESTRAINTS WERE ADDED IN THE FINAL ROUNDS OF REFINEMENT; THE COORDINATING LIGANDS AND THEIR GEOMETRIC ARRANGEMENT WERE IDENTIFIED BASED ON INITIAL NOE-DERIVED STRUCTURES CALCULATED WITHOUT INCLUSION OF THE METAL ION. THREE N- TERMINAL RESIDUES (GLY-SER-HIS) REMAINING FROM CLEAVAGE OF THE HIS-TAG WERE DISORDERED AND NOT INCLUDED IN THE FINAL ENSEMBLE. DISTANCE GEOMETRY WITH SIMULATED ANNEALING 1 0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O BRUNGER (X-PLOR), NILGES (ARIA) refinement X-PLOR 3.851, ARIA 1999 structure solution VNMR 6 structure solution Felix 95.0 500 Varian UNITY ZN 56 2 ZN ZN 56 A MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A PRO 3 n 3 PRO 3 A VAL 4 n 4 VAL 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A LEU 7 n 7 LEU 7 A SER 8 n 8 SER 8 A CYS 9 n 9 CYS 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A PRO 12 n 12 PRO 12 A VAL 13 n 13 VAL 13 A SER 14 n 14 SER 14 A ALA 15 n 15 ALA 15 A TYR 16 n 16 TYR 16 A PHE 17 n 17 PHE 17 A ASN 18 n 18 ASN 18 A GLU 19 n 19 GLU 19 A TYR 20 n 20 TYR 20 A GLN 21 n 21 GLN 21 A ARG 22 n 22 ARG 22 A ARG 23 n 23 ARG 23 A VAL 24 n 24 VAL 24 A ALA 25 n 25 ALA 25 A ASP 26 n 26 ASP 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A ASP 29 n 29 ASP 29 A PRO 30 n 30 PRO 30 A LYS 31 n 31 LYS 31 A ASP 32 n 32 ASP 32 A VAL 33 n 33 VAL 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A LEU 37 n 37 LEU 37 A GLY 38 n 38 GLY 38 A LEU 39 n 39 LEU 39 A LYS 40 n 40 LYS 40 A ARG 41 n 41 ARG 41 A TYR 42 n 42 TYR 42 A CYS 43 n 43 CYS 43 A CYS 44 n 44 CYS 44 A ARG 45 n 45 ARG 45 A ARG 46 n 46 ARG 46 A MET 47 n 47 MET 47 A LEU 48 n 48 LEU 48 A ILE 49 n 49 ILE 49 A SER 50 n 50 SER 50 A HIS 51 n 51 HIS 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A THR 54 n 54 THR 54 A TRP 55 n 55 TRP 55 A author_defined_assembly 1 monomeric A CYS 6 A SG CYS 6 1_555 A ZN 56 B ZN ZN 1_555 A CYS 9 A SG CYS 9 1_555 111.8 A CYS 6 A SG CYS 6 1_555 A ZN 56 B ZN ZN 1_555 A CYS 43 A SG CYS 43 1_555 113.9 A CYS 9 A SG CYS 9 1_555 A ZN 56 B ZN ZN 1_555 A CYS 43 A SG CYS 43 1_555 104.7 A CYS 6 A SG CYS 6 1_555 A ZN 56 B ZN ZN 1_555 A CYS 44 A SG CYS 44 1_555 111.1 A CYS 9 A SG CYS 9 1_555 A ZN 56 B ZN ZN 1_555 A CYS 44 A SG CYS 44 1_555 112.7 A CYS 43 A SG CYS 43 1_555 A ZN 56 B ZN ZN 1_555 A CYS 44 A SG CYS 44 1_555 102.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H VAL LEU 33 37 1.54 2 A A O H VAL LEU 33 37 1.55 3 A A O H VAL LEU 33 37 1.56 4 A A O H VAL LEU 33 37 1.56 5 A A O H VAL LEU 33 37 1.54 6 A A O H VAL LEU 33 37 1.56 7 A A O H VAL LEU 33 37 1.54 8 A A O H VAL LEU 33 37 1.50 9 A A O H VAL LEU 33 37 1.54 9 A A O H SER LYS 8 11 1.58 10 A A O H VAL LEU 33 37 1.57 10 A A O H ARG GLU 23 28 1.57 11 A A O H VAL LEU 33 37 1.54 12 A A O H VAL LEU 33 37 1.53 13 A A O H VAL LEU 33 37 1.55 14 A A O H VAL LEU 33 37 1.57 15 A A O H VAL LEU 33 37 1.53 16 A A O H VAL LEU 33 37 1.54 17 A A O H VAL LEU 33 37 1.52 17 A A O H ASN ARG 18 22 1.58 18 A A O H VAL LEU 33 37 1.56 19 A A O H VAL LEU 33 37 1.55 20 A A O H VAL LEU 33 37 1.53 1 A VAL 4 65.18 -76.51 1 A ARG 5 -53.26 -178.73 1 A SER 8 -179.40 -55.96 1 A ASP 29 -56.72 107.62 1 A ARG 41 63.63 132.68 1 A HIS 51 -87.66 -73.89 1 A VAL 52 34.93 56.19 1 A GLU 53 -51.18 90.98 2 A VAL 4 66.53 -67.88 2 A ARG 5 -75.18 -168.30 2 A CYS 6 -58.33 -157.56 2 A LEU 7 84.74 30.94 2 A SER 8 -174.83 -76.12 2 A LYS 40 64.97 150.88 2 A ARG 41 60.27 148.53 2 A LEU 48 -70.63 -70.14 2 A SER 50 -76.82 -78.38 2 A VAL 52 35.57 68.05 3 A VAL 4 60.69 159.85 3 A ARG 5 74.13 -178.20 3 A SER 8 177.64 -45.16 3 A LYS 40 59.57 -80.66 3 A ARG 46 -38.65 -39.37 3 A VAL 52 -41.48 108.77 3 A THR 54 53.29 80.59 4 A VAL 4 64.45 -77.91 4 A ARG 5 -55.86 179.27 4 A CYS 6 -57.84 -164.38 4 A LEU 7 93.42 28.61 4 A SER 8 173.69 -72.92 4 A LYS 40 -54.69 -171.82 4 A ARG 41 84.29 -49.99 4 A TYR 42 89.77 -23.92 4 A ILE 49 -39.66 -32.70 4 A HIS 51 -87.32 -77.54 4 A VAL 52 34.26 94.43 5 A VAL 4 64.98 -76.53 5 A ARG 5 -55.40 -179.64 5 A SER 8 -179.06 -60.18 5 A SER 14 -63.20 -72.75 5 A ASP 29 -55.67 109.83 5 A ARG 41 -148.54 -42.09 5 A TYR 42 89.91 -39.10 5 A SER 50 -86.88 -76.84 5 A VAL 52 44.99 27.70 5 A GLU 53 47.23 75.26 6 A VAL 4 60.93 161.66 6 A ARG 5 79.83 -161.12 6 A SER 8 -172.64 -61.54 6 A LEU 39 -41.26 109.89 6 A ARG 41 61.73 129.95 6 A VAL 52 -40.74 108.18 7 A VAL 4 65.56 -75.45 7 A CYS 6 -59.68 -153.78 7 A LEU 7 91.33 22.32 7 A SER 8 -175.74 -70.80 7 A ARG 41 61.44 138.07 7 A LEU 48 -79.50 -70.25 7 A HIS 51 -87.58 -77.36 7 A VAL 52 35.55 97.31 7 A THR 54 50.02 77.25 8 A ILE 2 61.70 65.77 8 A VAL 4 149.55 -26.55 8 A CYS 6 -58.00 100.61 8 A SER 8 -173.32 -75.03 8 A ALA 15 69.27 -63.32 8 A LYS 40 -45.69 -86.26 8 A SER 50 -87.64 -74.04 8 A VAL 52 45.92 76.55 8 A GLU 53 -47.40 94.13 8 A THR 54 -97.42 40.06 9 A VAL 4 151.46 154.01 9 A ARG 5 78.08 -170.29 9 A CYS 6 -58.91 -156.65 9 A LEU 7 83.83 34.42 9 A SER 8 169.75 -72.58 9 A CYS 9 47.11 27.21 9 A LEU 39 -39.05 113.86 9 A LYS 40 -78.16 -73.20 9 A ARG 46 -39.51 -35.28 9 A ILE 49 -38.26 -30.10 9 A SER 50 -82.00 -79.05 9 A VAL 52 42.38 29.29 9 A GLU 53 47.75 96.89 10 A PRO 3 -86.49 43.88 10 A VAL 4 -170.60 -73.02 10 A ARG 5 -57.21 175.68 10 A SER 8 -164.75 -79.33 10 A LYS 40 54.15 -90.06 10 A ARG 46 -39.49 -39.32 10 A SER 50 -87.09 -72.47 10 A VAL 52 37.85 71.88 11 A VAL 4 65.38 -73.43 11 A ARG 5 -67.73 -173.36 11 A CYS 6 -57.17 -162.12 11 A LEU 7 92.19 32.83 11 A SER 8 178.87 -67.93 11 A CYS 9 48.54 25.83 11 A LEU 39 -101.24 -160.94 11 A LYS 40 -108.26 -88.08 11 A LEU 48 -75.65 -70.80 11 A ILE 49 -39.81 -31.15 11 A SER 50 -77.76 -77.38 11 A HIS 51 -88.02 -72.82 11 A GLU 53 61.05 96.59 12 A VAL 4 152.91 167.55 12 A ARG 5 81.30 -166.62 12 A SER 8 -170.56 -67.73 12 A LYS 40 -67.62 -171.37 12 A ARG 41 47.48 -174.46 12 A TYR 42 -141.95 14.67 12 A SER 50 -80.89 -77.84 12 A HIS 51 -87.65 -74.70 12 A VAL 52 44.98 28.98 12 A GLU 53 62.56 108.80 13 A VAL 4 64.50 -77.11 13 A ARG 5 -52.25 -172.06 13 A SER 8 -174.56 -55.72 13 A ASP 29 -58.92 108.00 13 A LYS 40 66.39 144.50 13 A ARG 41 61.04 139.46 13 A SER 50 -84.60 -78.60 13 A VAL 52 46.08 29.42 13 A GLU 53 59.20 -88.47 14 A VAL 4 65.00 -76.86 14 A ARG 5 -54.67 176.69 14 A SER 8 -177.55 -69.19 14 A LYS 40 -54.04 -172.62 14 A ARG 41 71.65 -54.34 14 A TYR 42 93.03 -23.42 14 A SER 50 -84.74 -76.70 14 A VAL 52 37.37 94.67 15 A VAL 4 64.68 -77.13 15 A ARG 5 -56.50 175.92 15 A SER 8 -175.15 -62.22 15 A ASP 29 -57.61 109.59 15 A ARG 41 60.57 148.13 15 A SER 50 -83.57 -77.10 15 A HIS 51 -87.95 -77.07 15 A VAL 52 54.36 135.61 16 A VAL 4 64.89 -76.18 16 A SER 8 -171.81 -72.10 16 A ASP 29 -57.22 107.82 16 A LYS 40 -40.33 -89.12 16 A ARG 46 -36.78 -33.22 16 A SER 50 -87.45 -77.89 16 A VAL 52 43.58 95.65 17 A VAL 4 64.81 -76.96 17 A ARG 5 -54.74 -174.09 17 A SER 8 -173.79 -66.71 17 A ASP 29 -56.16 109.94 17 A LYS 40 -56.12 -85.82 17 A ILE 49 -38.95 -30.44 17 A SER 50 -85.78 -77.31 17 A GLU 53 70.63 -68.51 17 A THR 54 52.29 96.23 18 A VAL 4 60.75 160.93 18 A ARG 5 80.00 -161.86 18 A SER 8 -170.38 -64.19 18 A ARG 41 60.94 138.09 18 A SER 50 -82.86 -71.53 18 A HIS 51 -87.66 -77.04 18 A GLU 53 66.52 -160.05 19 A VAL 4 64.84 -76.77 19 A ARG 5 -51.95 -175.64 19 A SER 8 -167.41 -67.56 19 A LYS 40 58.73 155.26 19 A ARG 41 56.95 110.29 19 A HIS 51 -87.71 -78.09 19 A VAL 52 32.68 100.15 19 A THR 54 65.58 136.00 20 A VAL 4 152.79 168.72 20 A ARG 5 80.30 -163.24 20 A SER 8 -173.78 -66.20 20 A PRO 12 -38.82 134.46 20 A ARG 23 -61.80 -72.03 20 A LYS 40 -45.97 -78.10 20 A SER 50 -80.26 -73.47 20 A HIS 51 -87.20 -76.41 20 A VAL 52 36.74 98.47 20 A GLU 53 -47.66 101.03 SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM 1 N N 2 N N A SER 14 A SER 14 HELX_P A ASP 26 A ASP 26 1 1 13 A PRO 30 A PRO 30 HELX_P A LEU 37 A LEU 37 1 2 8 A CYS 43 A CYS 43 HELX_P A LEU 48 A LEU 48 1 3 6 metalc 2.222 A CYS 6 A SG CYS 6 1_555 A ZN 56 B ZN ZN 1_555 metalc 2.234 A CYS 9 A SG CYS 9 1_555 A ZN 56 B ZN ZN 1_555 metalc 2.319 A CYS 43 A SG CYS 43 1_555 A ZN 56 B ZN ZN 1_555 metalc 2.300 A CYS 44 A SG CYS 44 1_555 A ZN 56 B ZN ZN 1_555 TRANSFERASE THREE HELIX BUNDLE, ZINC BINDING, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSFERASE RPON_METTH UNP 1 O26147 1 55 1EF4 1 55 O26147 A 1 1 55 BINDING SITE FOR RESIDUE ZN A 56 A ZN 56 Software 4 A CYS 6 A CYS 6 4 1_555 A CYS 9 A CYS 9 4 1_555 A CYS 43 A CYS 43 4 1_555 A CYS 44 A CYS 44 4 1_555 1 P 1