1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kigawa, T. Endo, M. Ito, Y. Shirouzu, M. Kikuchi, A. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE FEBS Lett. FEBLAL 0165 0014-5793 441 413 418 10.1016/S0014-5793(98)01596-8 9891982 Solution structure of the Ras-binding domain of RGL. 1998 10.2210/pdb1ef5/pdb pdb_00001ef5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11737.146 RGL RAS-BINDING DOMAIN 1 man polymer no no SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN A trt001000187.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli DH5ALPHA PGEX2T RIKEN Structural Genomics/Proteomics Initiative RSGI database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-02-23 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Y RCSB Y RCSB 2000-02-07 REL REL The structure was determined using triple-resonance NMR spectroscopy. 1 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHB 200mM 7.5 1 atm 298 K the structures are based on a total of 1309 restraints, 1211 are NOE-derived distance constraints, 56 dihedral angle restraints, 42 distance restraints from hydrogen bonds. N-terminal residues 632-646 are not defined by NMR restraints and excluded from the coordinate file. simulated annealing minimized average structure 1.5mM RGL-RBD U-15N,13C; 50mM Tris-HCl; 5mM DTT; 10mM MgCl2; 200mM NaCl; 90% H2O, 10% D2O 90% H2O/10% D2O Bruker, AG. collection UXNMR Bruker, AG. collection XwinNMR 1.3 Boucher processing Azara 1.0 MSI, Inc. data analysis Felix 95 Brunger structure solution X-PLOR 3.1 Brunger refinement X-PLOR 3.1 600 Bruker AMX 500 Bruker DMX n 1 632 A n 2 633 A n 3 634 A n 4 635 A n 5 636 A n 6 637 A n 7 638 A n 8 639 A n 9 640 A n 10 641 A n 11 642 A n 12 643 A n 13 644 A n 14 645 A n 15 646 A GLU 647 n 16 GLU 647 A ASP 648 n 17 ASP 648 A THR 649 n 18 THR 649 A CYS 650 n 19 CYS 650 A ILE 651 n 20 ILE 651 A ILE 652 n 21 ILE 652 A ARG 653 n 22 ARG 653 A ILE 654 n 23 ILE 654 A SER 655 n 24 SER 655 A VAL 656 n 25 VAL 656 A GLU 657 n 26 GLU 657 A ASP 658 n 27 ASP 658 A ASN 659 n 28 ASN 659 A ASN 660 n 29 ASN 660 A GLY 661 n 30 GLY 661 A ASN 662 n 31 ASN 662 A MET 663 n 32 MET 663 A TYR 664 n 33 TYR 664 A LYS 665 n 34 LYS 665 A SER 666 n 35 SER 666 A ILE 667 n 36 ILE 667 A MET 668 n 37 MET 668 A LEU 669 n 38 LEU 669 A THR 670 n 39 THR 670 A SER 671 n 40 SER 671 A GLN 672 n 41 GLN 672 A ASP 673 n 42 ASP 673 A LYS 674 n 43 LYS 674 A THR 675 n 44 THR 675 A PRO 676 n 45 PRO 676 A ALA 677 n 46 ALA 677 A VAL 678 n 47 VAL 678 A ILE 679 n 48 ILE 679 A GLN 680 n 49 GLN 680 A ARG 681 n 50 ARG 681 A ALA 682 n 51 ALA 682 A MET 683 n 52 MET 683 A SER 684 n 53 SER 684 A LYS 685 n 54 LYS 685 A HIS 686 n 55 HIS 686 A ASN 687 n 56 ASN 687 A LEU 688 n 57 LEU 688 A GLU 689 n 58 GLU 689 A SER 690 n 59 SER 690 A ASP 691 n 60 ASP 691 A PRO 692 n 61 PRO 692 A ALA 693 n 62 ALA 693 A GLU 694 n 63 GLU 694 A GLU 695 n 64 GLU 695 A TYR 696 n 65 TYR 696 A GLU 697 n 66 GLU 697 A LEU 698 n 67 LEU 698 A VAL 699 n 68 VAL 699 A GLN 700 n 69 GLN 700 A VAL 701 n 70 VAL 701 A ILE 702 n 71 ILE 702 A SER 703 n 72 SER 703 A GLU 704 n 73 GLU 704 A ASP 705 n 74 ASP 705 A LYS 706 n 75 LYS 706 A GLU 707 n 76 GLU 707 A LEU 708 n 77 LEU 708 A VAL 709 n 78 VAL 709 A ILE 710 n 79 ILE 710 A PRO 711 n 80 PRO 711 A ASP 712 n 81 ASP 712 A SER 713 n 82 SER 713 A ALA 714 n 83 ALA 714 A ASN 715 n 84 ASN 715 A VAL 716 n 85 VAL 716 A PHE 717 n 86 PHE 717 A TYR 718 n 87 TYR 718 A ALA 719 n 88 ALA 719 A MET 720 n 89 MET 720 A ASN 721 n 90 ASN 721 A SER 722 n 91 SER 722 A GLN 723 n 92 GLN 723 A VAL 724 n 93 VAL 724 A ASN 725 n 94 ASN 725 A PHE 726 n 95 PHE 726 A ASP 727 n 96 ASP 727 A PHE 728 n 97 PHE 728 A ILE 729 n 98 ILE 729 A LEU 730 n 99 LEU 730 A ARG 731 n 100 ARG 731 A LYS 732 n 101 LYS 732 A LYS 733 n 102 LYS 733 A ASN 734 n 103 ASN 734 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 653 A N ARG 22 A O PHE 726 A O PHE 95 A N ARG 731 A N ARG 100 A O GLU 697 A O GLU 66 A N GLN 700 A N GLN 69 A O LEU 708 A O LEU 77 1 A SER 632 A SER 1 1 Y 1 A ILE 633 A ILE 2 1 Y 1 A THR 634 A THR 3 1 Y 1 A SER 635 A SER 4 1 Y 1 A THR 636 A THR 5 1 Y 1 A VAL 637 A VAL 6 1 Y 1 A LEU 638 A LEU 7 1 Y 1 A PRO 639 A PRO 8 1 Y 1 A PRO 640 A PRO 9 1 Y 1 A VAL 641 A VAL 10 1 Y 1 A TYR 642 A TYR 11 1 Y 1 A ASN 643 A ASN 12 1 Y 1 A GLN 644 A GLN 13 1 Y 1 A GLN 645 A GLN 14 1 Y 1 A ASN 646 A ASN 15 1 Y 1 A ARG 653 0.216 SIDE CHAIN 1 A ARG 681 0.185 SIDE CHAIN 1 A ARG 731 0.310 SIDE CHAIN 1 A ASP 648 45.05 84.58 1 A VAL 656 -101.72 56.50 1 A GLU 657 -154.76 64.72 1 A ASP 658 42.06 -142.96 1 A ASN 659 57.64 114.19 1 A TYR 664 -110.05 -78.17 1 A SER 666 173.09 48.72 1 A LEU 669 -44.17 169.31 1 A SER 671 170.13 58.30 1 A GLN 672 -179.50 104.71 1 A ASP 673 170.29 139.94 1 A LYS 674 -174.74 -75.72 1 A THR 675 -38.70 -179.55 1 A PRO 676 -28.20 -27.51 1 A MET 683 -90.06 -72.28 1 A LYS 685 -61.92 -84.37 1 A HIS 686 -48.34 -86.12 1 A ASN 687 159.31 56.59 1 A LEU 688 -125.71 -163.86 1 A GLU 689 -40.19 165.45 1 A ASP 691 51.86 125.54 1 A PRO 692 -87.22 32.69 1 A ALA 693 -55.90 -102.43 1 A ILE 702 -121.13 -88.69 1 A GLU 704 56.67 -94.08 1 A LYS 706 -155.23 76.62 1 A ILE 710 58.39 151.04 1 A PRO 711 -64.18 -159.57 1 A VAL 716 -40.67 91.74 1 A PHE 717 171.90 -62.05 1 A ASN 721 -177.10 -151.50 1 A GLN 723 178.12 105.92 1 A VAL 724 38.24 -162.38 1 A LYS 733 -151.93 -152.37 minimized average SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF RGL 1 N N A THR 675 A THR 44 HELX_P A MET 683 A MET 52 1 1 9 SIGNALING PROTEIN RAS-BINDING DOMAIN, RGL, RAS, RBD, RA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, SIGNALING PROTEIN RGL1_MOUSE UNP 1 632 Q60695 SITSTVLPPVYNQQNEDTCIIRISVEDNNGHMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN 632 734 1EF5 632 734 Q60695 A 1 1 103 1 HIS see remark 999 ASN 662 1EF5 A Q60695 UNP 662 31 4 parallel anti-parallel anti-parallel A ILE 652 A ILE 21 A VAL 656 A VAL 25 A PHE 726 A PHE 95 A LYS 732 A LYS 101 A TYR 696 A TYR 65 A VAL 701 A VAL 70 A LEU 708 A LEU 77 A VAL 709 A VAL 78 1 P 1