0.031328 0.000000 0.000000 0.000000 0.024219 0.000000 0.000000 0.000000 0.013080 0.00000 0.00000 0.00000 Harata, K. Muraki, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.0 90.0 90.0 31.92 41.29 76.45 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 297 673 681 10.1006/jmbi.2000.3594 10731420 Crystal structures of Urtica dioica agglutinin and its complex with tri-N-acetylchitotriose. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 286 1 DIFFRACTOMETER 1999-05-07 ENRAF-NONIUS FAST SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 9349.346 AGGLUTININ ISOLECTIN VI 1 nat polymer 18.015 water 54 nat water no yes (PCA)RCGSQGGGATCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDY CSGGKCQYRCSSS QRCGSQGGGATCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGG KCQYRCSSS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n great nettle Urtica sample 3501 Urtica dioica 3 2.69 54.33 VAPOR DIFFUSION, HANGING DROP 5.6 PEG1000, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 software diffrn_detector entity_poly pdbx_struct_mod_residue struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Polymer sequence 1 0 2000-04-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2018-04-18 2 0 2019-12-25 _software.name _diffrn_detector.detector _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag URTICA DIOICA AGGLUTININ IN COMPLEX WITH TRI-N-ACETYLCHITOTRIOSE RCSB Y RCSB 2000-02-20 REL REL HOH water HOH 101 2 HOH HOH 101 A HOH 102 2 HOH HOH 102 A HOH 103 2 HOH HOH 103 A HOH 104 2 HOH HOH 104 A HOH 105 2 HOH HOH 105 A HOH 106 2 HOH HOH 106 A HOH 107 2 HOH HOH 107 A HOH 108 2 HOH HOH 108 A HOH 109 2 HOH HOH 109 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A HOH 112 2 HOH HOH 112 A HOH 113 2 HOH HOH 113 A HOH 114 2 HOH HOH 114 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 117 2 HOH HOH 117 A HOH 118 2 HOH HOH 118 A HOH 119 2 HOH HOH 119 A HOH 120 2 HOH HOH 120 A HOH 121 2 HOH HOH 121 A HOH 122 2 HOH HOH 122 A HOH 123 2 HOH HOH 123 A HOH 124 2 HOH HOH 124 A HOH 125 2 HOH HOH 125 A HOH 126 2 HOH HOH 126 A HOH 127 2 HOH HOH 127 A HOH 128 2 HOH HOH 128 A HOH 129 2 HOH HOH 129 A HOH 130 2 HOH HOH 130 A HOH 131 2 HOH HOH 131 A HOH 132 2 HOH HOH 132 A HOH 133 2 HOH HOH 133 A HOH 134 2 HOH HOH 134 A HOH 135 2 HOH HOH 135 A HOH 136 2 HOH HOH 136 A HOH 137 2 HOH HOH 137 A HOH 138 2 HOH HOH 138 A HOH 139 2 HOH HOH 139 A HOH 140 2 HOH HOH 140 A HOH 141 2 HOH HOH 141 A HOH 142 2 HOH HOH 142 A HOH 143 2 HOH HOH 143 A HOH 144 2 HOH HOH 144 A HOH 145 2 HOH HOH 145 A HOH 146 2 HOH HOH 146 A HOH 147 2 HOH HOH 147 A HOH 148 2 HOH HOH 148 A HOH 149 2 HOH HOH 149 A HOH 150 2 HOH HOH 150 A HOH 151 2 HOH HOH 151 A HOH 152 2 HOH HOH 152 A HOH 153 2 HOH HOH 153 A HOH 154 2 HOH HOH 154 A PGL 1 n 1 PCA 1 A ARG 2 n 2 ARG 2 A CYS 3 n 3 CYS 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A GLN 6 n 6 GLN 6 A GLY 7 n 7 GLY 7 A GLY 8 n 8 GLY 8 A GLY 9 n 9 GLY 9 A ALA 10 n 10 ALA 10 A THR 11 n 11 THR 11 A CYS 12 n 12 CYS 12 A PRO 13 n 13 PRO 13 A GLY 14 n 14 GLY 14 A LEU 15 n 15 LEU 15 A ARG 16 n 16 ARG 16 A CYS 17 n 17 CYS 17 A CYS 18 n 18 CYS 18 A SER 19 n 19 SER 19 A ILE 20 n 20 ILE 20 A TRP 21 n 21 TRP 21 A GLY 22 n 22 GLY 22 A TRP 23 n 23 TRP 23 A CYS 24 n 24 CYS 24 A GLY 25 n 25 GLY 25 A ASP 26 n 26 ASP 26 A SER 27 n 27 SER 27 A GLU 28 n 28 GLU 28 A PRO 29 n 29 PRO 29 A TYR 30 n 30 TYR 30 A CYS 31 n 31 CYS 31 A GLY 32 n 32 GLY 32 A ARG 33 n 33 ARG 33 A THR 34 n 34 THR 34 A CYS 35 n 35 CYS 35 A GLU 36 n 36 GLU 36 A ASN 37 n 37 ASN 37 A LYS 38 n 38 LYS 38 A CYS 39 n 39 CYS 39 A TRP 40 n 40 TRP 40 A SER 41 n 41 SER 41 A GLY 42 n 42 GLY 42 A GLU 43 n 43 GLU 43 A ARG 44 n 44 ARG 44 A SER 45 n 45 SER 45 A ASP 46 n 46 ASP 46 A HIS 47 n 47 HIS 47 A ARG 48 n 48 ARG 48 A CYS 49 n 49 CYS 49 A GLY 50 n 50 GLY 50 A ALA 51 n 51 ALA 51 A ALA 52 n 52 ALA 52 A VAL 53 n 53 VAL 53 A GLY 54 n 54 GLY 54 A ASN 55 n 55 ASN 55 A PRO 56 n 56 PRO 56 A PRO 57 n 57 PRO 57 A CYS 58 n 58 CYS 58 A GLY 59 n 59 GLY 59 A GLN 60 n 60 GLN 60 A ASP 61 n 61 ASP 61 A ARG 62 n 62 ARG 62 A CYS 63 n 63 CYS 63 A CYS 64 n 64 CYS 64 A SER 65 n 65 SER 65 A VAL 66 n 66 VAL 66 A HIS 67 n 67 HIS 67 A GLY 68 n 68 GLY 68 A TRP 69 n 69 TRP 69 A CYS 70 n 70 CYS 70 A GLY 71 n 71 GLY 71 A GLY 72 n 72 GLY 72 A GLY 73 n 73 GLY 73 A ASN 74 n 74 ASN 74 A ASP 75 n 75 ASP 75 A TYR 76 n 76 TYR 76 A CYS 77 n 77 CYS 77 A SER 78 n 78 SER 78 A GLY 79 n 79 GLY 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A CYS 82 n 82 CYS 82 A GLN 83 n 83 GLN 83 A TYR 84 n 84 TYR 84 A ARG 85 n 85 ARG 85 A CYS 86 n 86 CYS 86 A SER 87 n 87 SER 87 A SER 88 n 88 SER 88 A SER 89 n 89 SER 89 A author_defined_assembly 1 monomeric A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 25 A N GLY 25 A O CYS 17 A O CYS 17 A O CYS 18 A O CYS 18 A N GLU 36 A N GLU 36 A O GLY 71 A O GLY 71 A N CYS 63 A N CYS 63 A O CYS 64 A O CYS 64 A N GLN 83 A N GLN 83 1 3.69 0.50 120.30 123.99 A A A NE CZ NH1 ARG ARG ARG 16 16 16 N 1 -3.66 0.50 120.30 116.64 A A A NE CZ NH2 ARG ARG ARG 16 16 16 N 1 6.67 0.80 106.30 112.97 A A A CD1 CG CD2 TRP TRP TRP 21 21 21 N 1 -5.57 0.80 107.30 101.73 A A A CE2 CD2 CG TRP TRP TRP 21 21 21 N 1 7.05 0.80 106.30 113.35 A A A CD1 CG CD2 TRP TRP TRP 23 23 23 N 1 -6.12 0.80 107.30 101.18 A A A CE2 CD2 CG TRP TRP TRP 23 23 23 N 1 5.52 0.80 106.30 111.82 A A A CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -5.19 0.80 107.30 102.11 A A A CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 44 44 44 N 1 4.44 0.50 120.30 124.74 A A A NE CZ NH1 ARG ARG ARG 48 48 48 N 1 -3.05 0.50 120.30 117.25 A A A NE CZ NH2 ARG ARG ARG 62 62 62 N 1 6.45 0.80 106.30 112.75 A A A CD1 CG CD2 TRP TRP TRP 69 69 69 N 1 -5.77 0.80 107.30 101.53 A A A CE2 CD2 CG TRP TRP TRP 69 69 69 N 1 -4.75 0.60 121.00 116.25 A A A CB CG CD2 TYR TYR TYR 84 84 84 N 1 -17.37 2.70 111.00 93.63 A A A N CA C SER SER SER 88 88 88 N 1 A A NE2 CD2 HIS HIS 67 67 -0.066 0.011 1.373 1.307 N 1 A THR 34 -91.90 30.29 1 A HIS 47 59.92 16.70 1 A SER 87 22.55 52.06 1 A SER 88 151.79 -99.58 0.267 0.229 1.5 8.0 1212 13142 1 2.0 1.5 8.0 54 695 0 0 641 0.015 3.01 20.9 1.4 24.5 1EHD 19125 19125 0.0 0.0 0.031 1 7.98 8.3 89.0 0.323 1.40 1.427 859 76.1 data collection MADNESS data reduction MERGEF model building MIRPHS refinement X-PLOR 3.1 data reduction MADNESS data scaling MERGEF phasing MIRPHS AGGLUTININ ISOLECTIN VI CRYSTAL STRUCTURE OF URTICA DIOICA AGGLUTININ ISOLECTIN VI 1 N N 2 N N A GLY 4 A GLY 4 HELX_P A GLY 8 A GLY 8 5 1 5 A CYS 12 A CYS 12 HELX_P A ARG 16 A ARG 16 5 2 5 A SER 27 A SER 27 HELX_P A GLY 32 A GLY 32 1 3 6 A CYS 39 A CYS 39 HELX_P A GLU 43 A GLU 43 5 4 5 A GLY 50 A GLY 50 HELX_P A GLY 54 A GLY 54 5 5 5 A GLY 73 A GLY 73 HELX_P A SER 78 A SER 78 1 6 6 disulf 2.035 A CYS 3 A SG CYS 3 1_555 A CYS 18 A SG CYS 18 1_555 disulf 2.035 A CYS 12 A SG CYS 12 1_555 A CYS 24 A SG CYS 24 1_555 disulf 1.952 A CYS 17 A SG CYS 17 1_555 A CYS 31 A SG CYS 31 1_555 disulf 1.998 A CYS 35 A SG CYS 35 1_555 A CYS 39 A SG CYS 39 1_555 disulf 2.020 A CYS 49 A SG CYS 49 1_555 A CYS 64 A SG CYS 64 1_555 disulf 2.038 A CYS 58 A SG CYS 58 1_555 A CYS 70 A SG CYS 70 1_555 disulf 2.023 A CYS 63 A SG CYS 63 1_555 A CYS 77 A SG CYS 77 1_555 disulf 2.044 A CYS 82 A SG CYS 82 1_555 A CYS 86 A SG CYS 86 1_555 covale 1.310 both A PCA 1 A C PCA 1 1_555 A ARG 2 A N ARG 2 1_555 PLANT PROTEIN Two homologous hevein-like domains, PLANT PROTEIN Q9S7B3_URTDI UNP 1 24 Q9S7B3 QRCGSQGGGSTCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGG NCQYRCSSS 24 112 1EHD 1 89 Q9S7B3 A 1 1 89 1 SER conflict ALA 10 1EHD A Q9S7B3 UNP 33 10 1 ASN conflict LYS 81 1EHD A Q9S7B3 UNP 104 81 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A CYS 24 A CYS 24 A GLY 25 A GLY 25 A CYS 17 A CYS 17 A SER 19 A SER 19 A CYS 35 A CYS 35 A ASN 37 A ASN 37 A CYS 70 A CYS 70 A GLY 71 A GLY 71 A CYS 63 A CYS 63 A SER 65 A SER 65 A CYS 82 A CYS 82 A TYR 84 A TYR 84 19 P 21 21 21