1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Assfalg, M.
Banci, L.
Bertini, I.
Bruschi, M.
Giudici-Orticoni, M.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
266
634
643
10.1046/j.1432-1327.1999.00904.x
10561607
A proton-NMR investigation of the fully reduced cytochrome c7 from Desulfuromonas acetoxidans. Comparison between the reduced and the oxidized forms.
1999
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
256 (2)
261
270
10.1046/j.1432-1327.1998.2560261.x
800 MHz 1H NMR solution structure refinement of oxidized cytochrome c7 from Desulfuromonas acetoxidans.
1998
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93 (25)
14396
14400
10.1073/pnas.93.25.14396
NMR characterization and solution structure determination of the oxidized cytochrome c7 from Desulfuromonas acetoxidans.
1996
10.2210/pdb1ehj/pdb
pdb_00001ehj
ONE RESIDUE HAS INCORRECT CHIRALITY
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7280.309
CYTOCHROME C7
1
nat
polymer
618.503
HEME C
3
syn
non-polymer
no
no
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Desulfuromonas
sample
891
Desulfuromonas acetoxidans
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-05-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-02-21
REL
REL
HEC
HEME C
This structure was determined using standard 2D homonuclear techniques.
1
TOCSY
TOCSY
TOCSY
2D NOESY
2D NOESY
5.5
ambient
292
K
6.5
ambient
292
K
8.0
ambient
292
K
The structures are based on a total of 1352 NOE-derived constraints
simulated annealing combined with torsion angle dynamics restrained energy minimization
2-3mM cytochrome 1H; 100mM phosphate buffer
90% H2O/10% D2O
refinement
Amber
4.1
structure solution
DYANA
1.5
data analysis
XEASY
3.1
processing
XwinNMR
800
Bruker
AVANCE
500
Bruker
AMX
HEC
30
2
HEC
HEC
1030
A
HEC
53
2
HEC
HEC
1053
A
HEC
66
2
HEC
HEC
1066
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
VAL
4
n
4
VAL
4
A
THR
5
n
5
THR
5
A
TYR
6
n
6
TYR
6
A
GLU
7
n
7
GLU
7
A
ASN
8
n
8
ASN
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
PHE
15
n
15
PHE
15
A
ASP
16
n
16
ASP
16
A
HIS
17
n
17
HIS
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
HIS
20
n
20
HIS
20
A
ALA
21
n
21
ALA
21
A
GLU
22
n
22
GLU
22
A
LYS
23
n
23
LYS
23
A
LEU
24
n
24
LEU
24
A
GLY
25
n
25
GLY
25
A
CYS
26
n
26
CYS
26
A
ASP
27
n
27
ASP
27
A
ALA
28
n
28
ALA
28
A
CYS
29
n
29
CYS
29
A
HIS
30
n
30
HIS
30
A
GLU
31
n
31
GLU
31
A
GLY
32
n
32
GLY
32
A
THR
33
n
33
THR
33
A
PRO
34
n
34
PRO
34
A
ALA
35
n
35
ALA
35
A
LYS
36
n
36
LYS
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
ILE
39
n
39
ILE
39
A
ASP
40
n
40
ASP
40
A
LYS
41
n
41
LYS
41
A
LYS
42
n
42
LYS
42
A
SER
43
n
43
SER
43
A
ALA
44
n
44
ALA
44
A
HIS
45
n
45
HIS
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
ALA
48
n
48
ALA
48
A
CYS
49
n
49
CYS
49
A
LYS
50
n
50
LYS
50
A
THR
51
n
51
THR
51
A
CYS
52
n
52
CYS
52
A
HIS
53
n
53
HIS
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
ASN
56
n
56
ASN
56
A
ASN
57
n
57
ASN
57
A
GLY
58
n
58
GLY
58
A
PRO
59
n
59
PRO
59
A
THR
60
n
60
THR
60
A
LYS
61
n
61
LYS
61
A
CYS
62
n
62
CYS
62
A
GLY
63
n
63
GLY
63
A
GLY
64
n
64
GLY
64
A
CYS
65
n
65
CYS
65
A
HIS
66
n
66
HIS
66
A
ILE
67
n
67
ILE
67
A
LYS
68
n
68
LYS
68
A
author_defined_assembly
1
monomeric
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NA
HEC
1_555
93.1
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NB
HEC
1_555
90.3
A
HEC
1030
B
NA
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NB
HEC
1_555
90.7
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NC
HEC
1_555
87.6
A
HEC
1030
B
NA
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NC
HEC
1_555
177.7
A
HEC
1030
B
NB
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
NC
HEC
1_555
91.5
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
ND
HEC
1_555
89.0
A
HEC
1030
B
NA
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
ND
HEC
1_555
88.5
A
HEC
1030
B
NB
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
ND
HEC
1_555
178.9
A
HEC
1030
B
NC
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HEC
1030
B
ND
HEC
1_555
89.3
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
174.2
A
HEC
1030
B
NA
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
92.7
A
HEC
1030
B
NB
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
89.4
A
HEC
1030
B
NC
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
86.6
A
HEC
1030
B
ND
HEC
1_555
A
HEC
1030
B
FE
HEC
1_555
A
HIS
30
A
NE2
HIS
30
1_555
91.4
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NA
HEC
1_555
93.0
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NB
HEC
1_555
92.4
A
HEC
1053
C
NA
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NB
HEC
1_555
90.0
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NC
HEC
1_555
89.2
A
HEC
1053
C
NA
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NC
HEC
1_555
177.1
A
HEC
1053
C
NB
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
NC
HEC
1_555
91.7
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
ND
HEC
1_555
89.6
A
HEC
1053
C
NA
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
ND
HEC
1_555
91.0
A
HEC
1053
C
NB
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
ND
HEC
1_555
177.7
A
HEC
1053
C
NC
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HEC
1053
C
ND
HEC
1_555
87.1
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
177.1
A
HEC
1053
C
NA
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
89.1
A
HEC
1053
C
NB
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
89.6
A
HEC
1053
C
NC
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
88.6
A
HEC
1053
C
ND
HEC
1_555
A
HEC
1053
C
FE
HEC
1_555
A
HIS
53
A
NE2
HIS
53
1_555
88.3
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NA
HEC
1_555
90.6
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NB
HEC
1_555
91.4
A
HEC
1066
D
NA
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NB
HEC
1_555
90.7
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NC
HEC
1_555
89.5
A
HEC
1066
D
NA
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NC
HEC
1_555
179.8
A
HEC
1066
D
NB
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
NC
HEC
1_555
89.4
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
ND
HEC
1_555
93.2
A
HEC
1066
D
NA
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
ND
HEC
1_555
90.7
A
HEC
1066
D
NB
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
ND
HEC
1_555
175.2
A
HEC
1066
D
NC
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HEC
1066
D
ND
HEC
1_555
89.2
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
177.8
A
HEC
1066
D
NA
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
91.4
A
HEC
1066
D
NB
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
89.6
A
HEC
1066
D
NC
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
88.5
A
HEC
1066
D
ND
HEC
1_555
A
HEC
1066
D
FE
HEC
1_555
A
HIS
66
A
NE2
HIS
66
1_555
85.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
6
A
O
TYR
6
A
N
VAL
13
A
N
VAL
13
1
A
CA
ALA
1
WRONG HAND
1
A
ASP
16
-68.45
75.76
1
A
CYS
26
176.85
-51.53
1
A
ALA
35
-155.81
58.11
1
A
LYS
36
59.11
-171.98
1
A
ILE
37
-134.76
-50.10
1
A
ALA
38
73.16
70.78
1
A
LYS
46
-84.18
-72.63
1
A
ALA
48
-147.46
-86.69
1
A
LYS
50
-82.63
39.23
1
A
THR
51
-134.50
-52.59
1
A
LYS
61
-92.89
-93.86
1
A
CYS
62
-132.66
-155.23
1
A
CYS
65
-120.90
-56.03
A PROTON-NMR INVESTIGATION OF THE FULLY REDUCED CYTOCHROME C7 FROM DESULFUROMONAS ACETOXIDANS
1
N
N
2
N
N
2
N
N
2
N
N
A
ASP
16
A
ASP
16
HELX_P
A
GLY
25
A
GLY
25
1
1
10
A
ASP
40
A
ASP
40
HELX_P
A
ALA
48
A
ALA
48
1
2
9
A
ALA
48
A
ALA
48
HELX_P
A
HIS
53
A
HIS
53
1
3
6
A
LYS
54
A
LYS
54
HELX_P
A
ASN
56
A
ASN
56
5
4
3
covale
1.820
none
A
CYS
26
A
SG
CYS
26
1_555
A
HEC
1030
B
CAB
HEC
1_555
covale
1.814
none
A
CYS
29
A
SG
CYS
29
1_555
A
HEC
1030
B
CAC
HEC
1_555
covale
1.816
none
A
CYS
49
A
SG
CYS
49
1_555
A
HEC
1053
C
CAB
HEC
1_555
covale
1.815
none
A
CYS
52
A
SG
CYS
52
1_555
A
HEC
1053
C
CAC
HEC
1_555
covale
1.809
none
A
CYS
62
A
SG
CYS
62
1_555
A
HEC
1066
D
CAB
HEC
1_555
covale
1.813
none
A
CYS
65
A
SG
CYS
65
1_555
A
HEC
1066
D
CAC
HEC
1_555
metalc
1.912
A
HIS
17
A
NE2
HIS
17
1_555
A
HEC
1030
B
FE
HEC
1_555
metalc
1.984
A
HIS
20
A
NE2
HIS
20
1_555
A
HEC
1053
C
FE
HEC
1_555
metalc
1.935
A
HIS
30
A
NE2
HIS
30
1_555
A
HEC
1030
B
FE
HEC
1_555
metalc
1.980
A
HIS
45
A
NE2
HIS
45
1_555
A
HEC
1066
D
FE
HEC
1_555
metalc
1.958
A
HIS
53
A
NE2
HIS
53
1_555
A
HEC
1053
C
FE
HEC
1_555
metalc
1.938
A
HIS
66
A
NE2
HIS
66
1_555
A
HEC
1066
D
FE
HEC
1_555
ELECTRON TRANSPORT
multi-heme, ELECTRON TRANSPORT
CYC3_DESAC
UNP
1
1
P00137
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
1
68
1EHJ
1
68
P00137
A
1
1
68
2
anti-parallel
A
VAL
4
A
VAL
4
A
TYR
6
A
TYR
6
A
VAL
13
A
VAL
13
A
PHE
15
A
PHE
15
BINDING SITE FOR RESIDUE HEC A 1030
A
HEC
1030
Software
12
BINDING SITE FOR RESIDUE HEC A 1053
A
HEC
1053
Software
12
BINDING SITE FOR RESIDUE HEC A 1066
A
HEC
1066
Software
15
A
TYR
6
A
TYR
6
12
1_555
A
HIS
17
A
HIS
17
12
1_555
A
HIS
20
A
HIS
20
12
1_555
A
ALA
21
A
ALA
21
12
1_555
A
GLY
25
A
GLY
25
12
1_555
A
CYS
26
A
CYS
26
12
1_555
A
CYS
29
A
CYS
29
12
1_555
A
HIS
30
A
HIS
30
12
1_555
A
PRO
34
A
PRO
34
12
1_555
A
LYS
36
A
LYS
36
12
1_555
A
ILE
37
A
ILE
37
12
1_555
A
ALA
38
A
ALA
38
12
1_555
A
VAL
13
A
VAL
13
12
1_555
A
THR
14
A
THR
14
12
1_555
A
HIS
20
A
HIS
20
12
1_555
A
LYS
23
A
LYS
23
12
1_555
A
LEU
24
A
LEU
24
12
1_555
A
ALA
48
A
ALA
48
12
1_555
A
CYS
49
A
CYS
49
12
1_555
A
CYS
52
A
CYS
52
12
1_555
A
HIS
53
A
HIS
53
12
1_555
A
ASN
56
A
ASN
56
12
1_555
A
ASN
57
A
ASN
57
12
1_555
A
GLY
64
A
GLY
64
12
1_555
A
ASN
8
A
ASN
8
15
1_555
A
LYS
9
A
LYS
9
15
1_555
A
LYS
10
A
LYS
10
15
1_555
A
VAL
13
A
VAL
13
15
1_555
A
ASP
40
A
ASP
40
15
1_555
A
LYS
41
A
LYS
41
15
1_555
A
ALA
44
A
ALA
44
15
1_555
A
HIS
45
A
HIS
45
15
1_555
A
CYS
49
A
CYS
49
15
1_555
A
LYS
50
A
LYS
50
15
1_555
A
HIS
53
A
HIS
53
15
1_555
A
LYS
61
A
LYS
61
15
1_555
A
CYS
62
A
CYS
62
15
1_555
A
CYS
65
A
CYS
65
15
1_555
A
HIS
66
A
HIS
66
15
1_555
1
P 1