1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Assfalg, M. Banci, L. Bertini, I. Bruschi, M. Giudici-Orticoni, M.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking IX Eur.J.Biochem. EJBCAI 0262 0014-2956 266 634 643 10.1046/j.1432-1327.1999.00904.x 10561607 A proton-NMR investigation of the fully reduced cytochrome c7 from Desulfuromonas acetoxidans. Comparison between the reduced and the oxidized forms. 1999 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 256 (2) 261 270 10.1046/j.1432-1327.1998.2560261.x 800 MHz 1H NMR solution structure refinement of oxidized cytochrome c7 from Desulfuromonas acetoxidans. 1998 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 93 (25) 14396 14400 10.1073/pnas.93.25.14396 NMR characterization and solution structure determination of the oxidized cytochrome c7 from Desulfuromonas acetoxidans. 1996 10.2210/pdb1ehj/pdb pdb_00001ehj ONE RESIDUE HAS INCORRECT CHIRALITY 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 7280.309 CYTOCHROME C7 1 nat polymer 618.503 HEME C 3 syn non-polymer no no ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfuromonas sample 891 Desulfuromonas acetoxidans database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-05-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-02-21 REL REL HEC HEME C This structure was determined using standard 2D homonuclear techniques. 1 TOCSY TOCSY TOCSY 2D NOESY 2D NOESY 5.5 ambient 292 K 6.5 ambient 292 K 8.0 ambient 292 K The structures are based on a total of 1352 NOE-derived constraints simulated annealing combined with torsion angle dynamics restrained energy minimization 2-3mM cytochrome 1H; 100mM phosphate buffer 90% H2O/10% D2O refinement Amber 4.1 structure solution DYANA 1.5 data analysis XEASY 3.1 processing XwinNMR 800 Bruker AVANCE 500 Bruker AMX HEC 30 2 HEC HEC 1030 A HEC 53 2 HEC HEC 1053 A HEC 66 2 HEC HEC 1066 A ALA 1 n 1 ALA 1 A ASP 2 n 2 ASP 2 A VAL 3 n 3 VAL 3 A VAL 4 n 4 VAL 4 A THR 5 n 5 THR 5 A TYR 6 n 6 TYR 6 A GLU 7 n 7 GLU 7 A ASN 8 n 8 ASN 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A GLY 11 n 11 GLY 11 A ASN 12 n 12 ASN 12 A VAL 13 n 13 VAL 13 A THR 14 n 14 THR 14 A PHE 15 n 15 PHE 15 A ASP 16 n 16 ASP 16 A HIS 17 n 17 HIS 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A HIS 20 n 20 HIS 20 A ALA 21 n 21 ALA 21 A GLU 22 n 22 GLU 22 A LYS 23 n 23 LYS 23 A LEU 24 n 24 LEU 24 A GLY 25 n 25 GLY 25 A CYS 26 n 26 CYS 26 A ASP 27 n 27 ASP 27 A ALA 28 n 28 ALA 28 A CYS 29 n 29 CYS 29 A HIS 30 n 30 HIS 30 A GLU 31 n 31 GLU 31 A GLY 32 n 32 GLY 32 A THR 33 n 33 THR 33 A PRO 34 n 34 PRO 34 A ALA 35 n 35 ALA 35 A LYS 36 n 36 LYS 36 A ILE 37 n 37 ILE 37 A ALA 38 n 38 ALA 38 A ILE 39 n 39 ILE 39 A ASP 40 n 40 ASP 40 A LYS 41 n 41 LYS 41 A LYS 42 n 42 LYS 42 A SER 43 n 43 SER 43 A ALA 44 n 44 ALA 44 A HIS 45 n 45 HIS 45 A LYS 46 n 46 LYS 46 A ASP 47 n 47 ASP 47 A ALA 48 n 48 ALA 48 A CYS 49 n 49 CYS 49 A LYS 50 n 50 LYS 50 A THR 51 n 51 THR 51 A CYS 52 n 52 CYS 52 A HIS 53 n 53 HIS 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A ASN 56 n 56 ASN 56 A ASN 57 n 57 ASN 57 A GLY 58 n 58 GLY 58 A PRO 59 n 59 PRO 59 A THR 60 n 60 THR 60 A LYS 61 n 61 LYS 61 A CYS 62 n 62 CYS 62 A GLY 63 n 63 GLY 63 A GLY 64 n 64 GLY 64 A CYS 65 n 65 CYS 65 A HIS 66 n 66 HIS 66 A ILE 67 n 67 ILE 67 A LYS 68 n 68 LYS 68 A author_defined_assembly 1 monomeric A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NA HEC 1_555 93.1 A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NB HEC 1_555 90.3 A HEC 1030 B NA HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NB HEC 1_555 90.7 A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NC HEC 1_555 87.6 A HEC 1030 B NA HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NC HEC 1_555 177.7 A HEC 1030 B NB HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B NC HEC 1_555 91.5 A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B ND HEC 1_555 89.0 A HEC 1030 B NA HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B ND HEC 1_555 88.5 A HEC 1030 B NB HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B ND HEC 1_555 178.9 A HEC 1030 B NC HEC 1_555 A HEC 1030 B FE HEC 1_555 A HEC 1030 B ND HEC 1_555 89.3 A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 A HIS 30 A NE2 HIS 30 1_555 174.2 A HEC 1030 B NA HEC 1_555 A HEC 1030 B FE HEC 1_555 A HIS 30 A NE2 HIS 30 1_555 92.7 A HEC 1030 B NB HEC 1_555 A HEC 1030 B FE HEC 1_555 A HIS 30 A NE2 HIS 30 1_555 89.4 A HEC 1030 B NC HEC 1_555 A HEC 1030 B FE HEC 1_555 A HIS 30 A NE2 HIS 30 1_555 86.6 A HEC 1030 B ND HEC 1_555 A HEC 1030 B FE HEC 1_555 A HIS 30 A NE2 HIS 30 1_555 91.4 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NA HEC 1_555 93.0 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NB HEC 1_555 92.4 A HEC 1053 C NA HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NB HEC 1_555 90.0 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NC HEC 1_555 89.2 A HEC 1053 C NA HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NC HEC 1_555 177.1 A HEC 1053 C NB HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C NC HEC 1_555 91.7 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C ND HEC 1_555 89.6 A HEC 1053 C NA HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C ND HEC 1_555 91.0 A HEC 1053 C NB HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C ND HEC 1_555 177.7 A HEC 1053 C NC HEC 1_555 A HEC 1053 C FE HEC 1_555 A HEC 1053 C ND HEC 1_555 87.1 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 A HIS 53 A NE2 HIS 53 1_555 177.1 A HEC 1053 C NA HEC 1_555 A HEC 1053 C FE HEC 1_555 A HIS 53 A NE2 HIS 53 1_555 89.1 A HEC 1053 C NB HEC 1_555 A HEC 1053 C FE HEC 1_555 A HIS 53 A NE2 HIS 53 1_555 89.6 A HEC 1053 C NC HEC 1_555 A HEC 1053 C FE HEC 1_555 A HIS 53 A NE2 HIS 53 1_555 88.6 A HEC 1053 C ND HEC 1_555 A HEC 1053 C FE HEC 1_555 A HIS 53 A NE2 HIS 53 1_555 88.3 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NA HEC 1_555 90.6 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NB HEC 1_555 91.4 A HEC 1066 D NA HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NB HEC 1_555 90.7 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NC HEC 1_555 89.5 A HEC 1066 D NA HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NC HEC 1_555 179.8 A HEC 1066 D NB HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D NC HEC 1_555 89.4 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D ND HEC 1_555 93.2 A HEC 1066 D NA HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D ND HEC 1_555 90.7 A HEC 1066 D NB HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D ND HEC 1_555 175.2 A HEC 1066 D NC HEC 1_555 A HEC 1066 D FE HEC 1_555 A HEC 1066 D ND HEC 1_555 89.2 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 A HIS 66 A NE2 HIS 66 1_555 177.8 A HEC 1066 D NA HEC 1_555 A HEC 1066 D FE HEC 1_555 A HIS 66 A NE2 HIS 66 1_555 91.4 A HEC 1066 D NB HEC 1_555 A HEC 1066 D FE HEC 1_555 A HIS 66 A NE2 HIS 66 1_555 89.6 A HEC 1066 D NC HEC 1_555 A HEC 1066 D FE HEC 1_555 A HIS 66 A NE2 HIS 66 1_555 88.5 A HEC 1066 D ND HEC 1_555 A HEC 1066 D FE HEC 1_555 A HIS 66 A NE2 HIS 66 1_555 85.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 6 A O TYR 6 A N VAL 13 A N VAL 13 1 A CA ALA 1 WRONG HAND 1 A ASP 16 -68.45 75.76 1 A CYS 26 176.85 -51.53 1 A ALA 35 -155.81 58.11 1 A LYS 36 59.11 -171.98 1 A ILE 37 -134.76 -50.10 1 A ALA 38 73.16 70.78 1 A LYS 46 -84.18 -72.63 1 A ALA 48 -147.46 -86.69 1 A LYS 50 -82.63 39.23 1 A THR 51 -134.50 -52.59 1 A LYS 61 -92.89 -93.86 1 A CYS 62 -132.66 -155.23 1 A CYS 65 -120.90 -56.03 A PROTON-NMR INVESTIGATION OF THE FULLY REDUCED CYTOCHROME C7 FROM DESULFUROMONAS ACETOXIDANS 1 N N 2 N N 2 N N 2 N N A ASP 16 A ASP 16 HELX_P A GLY 25 A GLY 25 1 1 10 A ASP 40 A ASP 40 HELX_P A ALA 48 A ALA 48 1 2 9 A ALA 48 A ALA 48 HELX_P A HIS 53 A HIS 53 1 3 6 A LYS 54 A LYS 54 HELX_P A ASN 56 A ASN 56 5 4 3 covale 1.820 none A CYS 26 A SG CYS 26 1_555 A HEC 1030 B CAB HEC 1_555 covale 1.814 none A CYS 29 A SG CYS 29 1_555 A HEC 1030 B CAC HEC 1_555 covale 1.816 none A CYS 49 A SG CYS 49 1_555 A HEC 1053 C CAB HEC 1_555 covale 1.815 none A CYS 52 A SG CYS 52 1_555 A HEC 1053 C CAC HEC 1_555 covale 1.809 none A CYS 62 A SG CYS 62 1_555 A HEC 1066 D CAB HEC 1_555 covale 1.813 none A CYS 65 A SG CYS 65 1_555 A HEC 1066 D CAC HEC 1_555 metalc 1.912 A HIS 17 A NE2 HIS 17 1_555 A HEC 1030 B FE HEC 1_555 metalc 1.984 A HIS 20 A NE2 HIS 20 1_555 A HEC 1053 C FE HEC 1_555 metalc 1.935 A HIS 30 A NE2 HIS 30 1_555 A HEC 1030 B FE HEC 1_555 metalc 1.980 A HIS 45 A NE2 HIS 45 1_555 A HEC 1066 D FE HEC 1_555 metalc 1.958 A HIS 53 A NE2 HIS 53 1_555 A HEC 1053 C FE HEC 1_555 metalc 1.938 A HIS 66 A NE2 HIS 66 1_555 A HEC 1066 D FE HEC 1_555 ELECTRON TRANSPORT multi-heme, ELECTRON TRANSPORT CYC3_DESAC UNP 1 1 P00137 ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK 1 68 1EHJ 1 68 P00137 A 1 1 68 2 anti-parallel A VAL 4 A VAL 4 A TYR 6 A TYR 6 A VAL 13 A VAL 13 A PHE 15 A PHE 15 BINDING SITE FOR RESIDUE HEC A 1030 A HEC 1030 Software 12 BINDING SITE FOR RESIDUE HEC A 1053 A HEC 1053 Software 12 BINDING SITE FOR RESIDUE HEC A 1066 A HEC 1066 Software 15 A TYR 6 A TYR 6 12 1_555 A HIS 17 A HIS 17 12 1_555 A HIS 20 A HIS 20 12 1_555 A ALA 21 A ALA 21 12 1_555 A GLY 25 A GLY 25 12 1_555 A CYS 26 A CYS 26 12 1_555 A CYS 29 A CYS 29 12 1_555 A HIS 30 A HIS 30 12 1_555 A PRO 34 A PRO 34 12 1_555 A LYS 36 A LYS 36 12 1_555 A ILE 37 A ILE 37 12 1_555 A ALA 38 A ALA 38 12 1_555 A VAL 13 A VAL 13 12 1_555 A THR 14 A THR 14 12 1_555 A HIS 20 A HIS 20 12 1_555 A LYS 23 A LYS 23 12 1_555 A LEU 24 A LEU 24 12 1_555 A ALA 48 A ALA 48 12 1_555 A CYS 49 A CYS 49 12 1_555 A CYS 52 A CYS 52 12 1_555 A HIS 53 A HIS 53 12 1_555 A ASN 56 A ASN 56 12 1_555 A ASN 57 A ASN 57 12 1_555 A GLY 64 A GLY 64 12 1_555 A ASN 8 A ASN 8 15 1_555 A LYS 9 A LYS 9 15 1_555 A LYS 10 A LYS 10 15 1_555 A VAL 13 A VAL 13 15 1_555 A ASP 40 A ASP 40 15 1_555 A LYS 41 A LYS 41 15 1_555 A ALA 44 A ALA 44 15 1_555 A HIS 45 A HIS 45 15 1_555 A CYS 49 A CYS 49 15 1_555 A LYS 50 A LYS 50 15 1_555 A HIS 53 A HIS 53 15 1_555 A LYS 61 A LYS 61 15 1_555 A CYS 62 A CYS 62 15 1_555 A CYS 65 A CYS 65 15 1_555 A HIS 66 A HIS 66 15 1_555 1 P 1